Molecular detection of sugarcane striate virus and sugarcane white streak virus and their prevalence in the Miami World Collection of sugarcane and related grasses

Viruses in the genus Mastrevirus (family Geminiviridae), including those infecting sugarcane, have natural geographical ranges almost exclusively restricted to Africa and the Indian Ocean islands off the African coast. Only sugarcane white streak virus (SWSV) in Barbados and sugarcane striate virus (SStrV) in Florida and Guadeloupe are known to infect a few sugarcane varieties in the Western Hemisphere. In this study, PCR assays were developed to detect these two viruses in sugarcane. Five hundred and seventy-one DNA samples from Saccharum species and interspecific hybrids from the Miami World Collection of sugarcane and related grasses were tested for the presence of SStrV and SWSV by PCR. No variety was found infected by SWSV but SStrV was detected in 19 varieties. PCR data were confirmed by sequencing amplified fragments (248 bp). These fragments shared 93%–100% nucleotide identity with SStrV sequences from the GenBank database. SStrV isolates were distributed in six phylogenetic groups, including the four strains of the virus. Most varieties infected by SStrV originated from Asia, thus confirming a previous hypothesis stating that this virus originated from this continent. Absence of SStrV in commercial sugarcane in Florida also suggested that this virus has not been spread in this location, while infected plants have been present for several decades.     

快速灵敏的甘蔗线条花叶病毒免疫学检测体系的建立

 甘蔗花叶病广泛存在于我国甘蔗种植区,严重影响甘蔗产业的高质量发展。近年来甘蔗线条花叶病毒在蔗区肆虐,尽管针对其的血清学检测技术已经建立,但是快速、准确、高通量的检测方法亟待发掘。本研究制备了^SCSMVCP的抗血清,特异性高,与引起甘蔗花叶病的另两种病原 (高粱花叶病毒和甘蔗花叶病毒) 间没有血清学交叉反应。基于该多克隆抗体,建立了直接抗原包被的ELISA、斑点杂交、Western blot和基于多抗的免疫试纸条检测技术。开发的免疫试纸条检测技术能快速、准确、高通量应用于田间病毒鉴定。本文提供了基于血清学的快速、准确、高通量,且便捷的甘蔗线条花叶病毒检测技术,有助于我国蔗区甘蔗花叶病的监测与防控。     

建兰花叶病毒和齿兰环斑病毒的检测技术及脱毒方法研究进展

为了弄清目前建兰花叶病毒(CymMV)和齿兰环斑病毒(ORSV)病毒检测和脱毒的研究概况,本研究详细阐述了2种病毒的检测方法、采用的脱毒技术和脱毒效率,分析比较了不同技术存在的弊端,指出现有的脱毒方法已不能满足兰科植物脱毒研究的需要。在此基础上,进一步提出应采用安全、可靠的新型脱毒技术来解决目前兰科植物产业瓶颈问题。超低温脱毒技术是近年来发展迅速的脱毒技术,具有独特优势,目前已在多种植物上成功应用,该方法的应用有望解决2种病毒脱毒方面存在的问题。     

Control of lettuce big-vein disease by application of fungicides and crop covers

One of the economically important diseases of lettuce is lettuce big-vein disease (LBVD), which leads to severe yield losses. LBVD is associated with a complex of two viruses, Lettuce big-vein associated virus (LBVaV) and Mirafiori lettuce big-vein virus (MLBVV). These viruses are transmitted by motile zoospores of Olpidium spp. fungi, which persist in the soil for decades through resting spores. In greenhouse and field experiments, this study tested whether changing plant and soil temperatures together with fungicide application would have a significant effect on controlling LBVD in lettuce. Soil fumigation with metam sodium was not effective at controlling the disease, as opposed to treatment with chloropicrin and methyl bromide. Moreover, the fungicides carbendazim and fluazinam were effective in reducing the incidence of Olpidium virulentus. Nevertheless, control of the fungal vector did not seem to be sufficient to control the disease due to the transition ability of the virus under low vector abundance. Crop covers, which affect the favourable environmental conditions for the viruses by lowering soil temperature and raising air temperature, reduced the disease symptoms. Combining fungicides with crop cover had a synergistic effect on reducing disease symptoms, thus providing a sustainable solution for LBVD.     

不同温度下TMV侵染枯斑三生烟的LncRNA差异表达

【目的】 筛选不同温度下烟草花叶病毒（Tobacco mosaic virus,TMV）侵染后枯斑三生烟（Nicotiana tabacum var. Samsun NN）差异表达的长链非编码RNA（long non-coding RNA,lncRNA）,研究lncRNA在枯斑三生烟抗性反应中的作用。【方法】 N基因的温度敏感性使枯斑三生烟在25℃时具备对TMV的抗性、在31℃抗性丧失,在这两个温度条件下对枯斑三生烟接种TMV和磷酸盐缓冲盐水（phosphate buffered saline,PBS）,48 h后提取系统叶总RNA,构建链特异性文库后进行深度测序。对测序结果进行过滤后利用HTSeq将有效数据与近缘品种TN90（N. tabacum var. TN90）基因组比对,筛选得到lncRNA后利用FPKM法估计lncRNA的表达水平。通过edgeR筛选差异表达lncRNA（differentially expressed lncRNA,DElncRNA）,并利用qRT-PCR技术对这一结果进行验证。通过共定位及共表达分析预测DElncRNA的靶基因,通过参考基因组注释、GO和KEGG富集分析研究靶基因的功能。【结果】 4个处理共12个样本经lncRNA-seq各测得约8 000万条clean reads,共获得4 737条已知lncRNA、40 169条新lncRNA。其中64个lncRNA在不同温度条件下TMV侵染后存在差异表达,qRT-PCR测定结果显示这些lncRNA的测序正确率在80%左右,表明本研究所得测序数据具备较高的可信度。对DElncRNA进行靶基因预测,发现一些基因同时被25℃下调和31℃上调的DElncRNA靶向。靶基因注释功能丰富,主要参与植物抗病、激素和代谢等生理过程。部分可能与激素通路相关的lncRNA,在25℃下TMV侵染时呈现下调趋势,而在31℃下TMV侵染则呈现上调趋势。GO富集分析显示靶基因主要参与构成膜、囊泡等组分,具备钙、钾离子通道抑制剂活性等分子功能,使相应离子得以转运引发随后的反应,同时也参与发病、抗原加工和呈现、细胞分裂素代谢等生理过程。KEGG分析发现靶基因显著富集在植物激素信号转导通路,25℃下调和31℃上调的DElncRNA靶基因同时富集在激素信号传导、ABC运输蛋白、苯丙烷类生物合成等通路。【结论】 不同温度（25℃和31℃）条件下TMV侵染枯斑三生烟后,长链非编码RNA差异表达,DElncRNA通过作用于激素信号传导、物质转运等过程参与寄主系统获得性抗性反应。研究结果可为揭示植物系统获得性抗性中lncRNA的调控功能以及新型抗病毒技术开发提供依据。     

侵染广东连州葫芦的黄瓜绿斑驳花叶病毒的分子特征 及致病性分析

【目的】黄瓜绿斑驳花叶病毒(Cucumber green mottle mosaic virus,CGMMV)是侵染瓜类作物的主要病毒之一,对瓜类产业造成巨大的危害。本研究旨在探明侵染广东省连州市葫芦的CGMMV分离物(CGMMV-GDLZ)分子特征及其在系统进化中的地位,并测定其对黄瓜、葫芦和西瓜的致病性,为CGMMV的防控提供理论依据。【方法】从广东省连州市葫芦种植基地采集2个疑似CGMMV侵染的病样以及1个无症状样品,提取总RNA,根据CGMMV参考序列（GenBank登录号：KX883801）设计引物进行RT-PCR检测,引物序列为F：CCACGAGTTGTTTCCTAATGCTG/R：TTTGCTAGGCGTGATCGGATTGT,退火温度53℃,扩增长度890 bp。将CGMMV全长序列分为前后两段,前半段1—3 511 nt,扩增引物序列为F：AAGTTCATTTCATTTGGAGAGGGTTTTAATTTTTATAA TTAAACAAA/R：AGTTCTGCATTAATTGCTATTTGGTAGGCACAGTGGTAG;后半段3 301—6 423 nt,扩增引物序列为F：GTGCGTGCTACCCCGACTCCAATAGGTTTGATTGCCCGTG/R：GGTGGAGATGCCATGCCGACCCTGGGCCCCTACCCGGGGAAAGG。将前后两段PCR产物通过同源重组的方法克隆到pCB301双元载体上,测序得到CGMMV-GDLZ分离物全长序列。利用CGMMV-GDLZ分离物全长序列在NCBI中进行Blast分析,然后通过MEGA7软件对CGMMV-GDLZ以及其他已经报道的CGMMV分离物进行系统进化树分析。将构建好的pCB301-CGMMV侵染性克隆注射接种本生烟验证其侵染性,然后再注射接种黄瓜、葫芦和西瓜的子叶,测定CGMMV-GDLZ分离物的致病性。【结果】RT-PCR结果证实,广东省连州市葫芦病样感染了CGMMV。CGMMV-GDLZ分离物全长序列为6 423 nt,编码4个蛋白,分别为129K复制酶（61—3 495 nt）、186K复制相关蛋白（61—5 007 nt）、运动蛋白MP（4 994—5 788 nt）和外壳蛋白CP（5 763—6 248 nt）。CGMMV-GDLZ核苷酸序列与CGMMV-eWT分离物（GenBank登录号：KY753928）同源性最高,为99.97%。系统进化树分析结果显示,CGMMV-GDLZ分离物与日本、韩国等东亚CGMMV分离物同属Group 1,在遗传距离上与山东、浙江和河南的CGMMV分离物最接近。pCB301-CGMMV侵染性克隆可以系统侵染本生烟,造成本生烟上部叶片出现皱缩、斑驳、凸起等症状,RT-PCR和Western blot进一步确认了侵染性克隆的侵染性。注射接种CGMMV-GDLZ分离物后15 dpi,葫芦和西瓜即可产生斑驳、花叶、突起、生长迟缓等症状,24 dpi时症状更明显。而15 dpi时,CGMMV-GDLZ分离物在黄瓜上的症状不明显,与未接种对照植株几乎没有区别;将植株从控温接种室移入网室中,30 dpi时,黄瓜植株上部叶片开始出现斑驳和花叶,40 dpi时,症状已经非常明显。RT-PCR和Western blot检测进一步确认了上述结果。【结论】侵染广东省连州市葫芦的CGMMV-GDLZ分离物与山东、浙江和河南的CGMMV分离物很可能具有相同的传染源;CGMMV-GDLZ分离物可以侵染本生烟、黄瓜、葫芦和西瓜等作物,但对这些作物的致病性存在差异。     

辣椒抗番茄斑萎病毒病研究进展及展望

番茄斑萎病毒（Tomato spotted wilt virus，TSWV）自19 世纪发现以来，在全世界各地蔓延，对多种作物造成重大经济损失。本文以辣椒为例，从TSWV 的发生与分布、病害症状检测、传播方式、防治方法、抗TSWV 育种及展望等6 个方面对国内外辣椒TSWV 的研究现状进行综述。     

蛋白质激发子Hrip1对小麦黄矮病的诱抗作用

小麦黄矮病是由大麦黄矮病毒（barley yellow dwarf virus，BYDV）引起的一种小麦病毒病，其传播介体是小麦蚜虫，在小麦生产中造成巨大的经济损失。近年来，植物诱导抗性作为一种新兴的植物病虫害防治措施引起了广泛的关注。蛋白质激发子Hrip1可以激活多种植物的免疫防御反应诱导植物产生广谱抗性。本研究评价了Hrip1对小麦黄矮病的诱抗效果。用30 μg/mL的Hrip1溶液进行小麦浸种和幼苗喷雾，随后接种BYDV，接种后第14 d，Hrip1对小麦黄矮病控制效果在50%以上，接种后第21 d控制效果仍在30%以上。实时荧光定量PCR检测结果显示，在Hrip1处理的小麦幼苗体内，BYDV外壳蛋白mRNA的数量显著低于对照组；EPG结果显示，在Hrip1处理的小麦幼苗上，麦二叉蚜寻找叶片刺吸位点和韧皮部取食位点的时间增加。以上结果表明：Hrip1能够有效地抑制BYDV在小麦体内的增殖；影响传毒媒介麦二叉蚜的取食行为，抑制其传毒能力。此外，Hrip1处理小麦能有效缓解BYDV引起的叶片黄化和植株矮化的症状。因此，Hrip1可以作为生物诱导剂综合控制小麦黄矮病。     

Simulation modelling of potato virus Y spread in relation to initial inoculum and vector activity

Potato virus Y(PVY) is a non-persistent virus that is transmitted by many aphid species and causes significant damage to potato production. We constructed a spatially-explicit model simulating PVY spread in a potato field and used it to investigate possible effects of transmission efficiency, initial inoculum levels, vector behavior, vector abundance, and timing of peak vector activity on PVY incidence at the end of a simulated growing season. Lower PVY incidence in planted seed resulted in lower virus infection at the end of the season. However, when populations of efficient PVY vectors were high, significant PVY spread occurred even when initial virus inoculum was low. Non-colonizing aphids were more important for PVY spread compared to colonizing aphids, particularly at high densities. An early-season peak in the numbers of noncolonizing aphids resulted in the highest number of infected plants in the end of the season, while mid-and late-season peaks caused relatively little virus spread. Our results highlight the importance of integrating different techniques to prevent the number of PVY-infected plants from exceeding economically acceptable levels instead of trying to control aphids within potato fields. Such management plans should be implemented very early in a growing season.     

自噬调节剂对感染日本脑炎病毒小鼠脑部细胞凋亡的影响

旨在研究自噬调控药物对感染日本脑炎病毒（Japanese encephalitis virus，JEV）小鼠脑部细胞凋亡的影响，本试验建立自噬调控药物处理的感染日本脑炎病毒小鼠的动物模型，其中，雷帕霉素为自噬诱导剂，渥漫青霉素及氯喹为自噬抑制剂。实验动物分成8组：DMEM对照组（Control）；JEV感染组（JEV）；JEV+雷帕霉素（Rapamycin）组（JEV+Rapa）；JEV+渥漫青霉素（Wortmannin）组（JEV+Wort）；JEV+氯喹（Chloroquine）组（JEV+CQ）；雷帕霉素组（Rapa）；渥漫青霉素组（Wort）；氯喹组（CQ）。观察不同处理组小鼠的临床症状；透射电镜观察小鼠脑部神经元及胶质细胞的线粒体损伤程度；Tunel染色观察统计小鼠脑部凋亡细胞分布；检测小鼠脑部凋亡因子及凋亡蛋白的表达量。与JEV+Rapa及JEV组相比较，JEV+Wort及JEV+CQ组小鼠出现轻微的神经症状，脑部神经元及胶质细胞线粒体轻度损伤，脑组织较少细胞发生凋亡。不同处理组小鼠脑部凋亡因子及凋亡蛋白的表达量变化差异不显著。综上表明，自噬抑制剂渥漫青霉素和氯喹可以在一定程度上抑制感染日本脑炎病毒小鼠脑组织中细胞凋亡的发生。