黄瓜花叶病毒分离物核酸酶保护试验(RPA)方法的株系分化研究

 采用黄瓜花叶病毒((CMV)亚组Ⅰ株系Fny-CMV及亚组Ⅱ株系Ls-CMV的RNA₂的特定序列片段的cDNA克隆,体外转录,同时掺入³²P标记制备负链RNA探针,再与纯化的甜椒上的CMV中国分离物的RNA进行杂交,检测其与探针之间的同源性。共检测样品分离物3份。试验结果表明:河南新乡和北京密云的CMV甜椒分离物与Fny-CMV的核苷酸有高度同源性,隶属于Fny-CMV为代表的亚组Ⅰ株系。来自福建的样品与亚组Ⅱ的Ls-CMV株系有高度同源性,隶属于CMV亚组Ⅱ株系。本试验同时利用源于我国CMV亚组Ⅰ的K株系的RNA₂两个EcoR Ⅰ位点间1657-2125 nt的核苷酸序列为探针,同样与以上3份CMV中国分离物进行RNA杂交,进一步比较分析了这几个分离物与我国亚组Ⅰ的K-CMV株系的关系,证明了我国CMV存在亚组与株系分化。     

百合黄瓜花叶病毒及其检测

应用酶联免疫吸附法(ELISA)检测了浙江丽水和杭州的东方百合、亚洲百合等栽培品种上黄瓜花叶病毒(CMV),64个田间样品中有26个带毒,检出率为40.6%;dsRNA检测结果与已知CMV-FQS株系的电泳条带相同,但百合组织中CMVdsRNA含量较低;电镜观察,受CMV侵染的样品中大多含有线状病毒,复合侵染率为35.9%;寄主反应测定显示从百合植株上获得的CMV株系均不能通过汁液摩擦接种侵染昆诺藜、苋色藜、普通烟、心叶烟等6科10种指示植物。     

黄瓜花叶病毒甜菜分离物的分离鉴定

 从新疆石河子地区春季采种甜菜和夏播母根用甜菜上分离到3个病毒分离物,代号为石-B-2、石-B-5和石-B-D,自然感染甜菜引起叶片黄色花叶、扭曲、皱缩和植株严重矮化。病毒粒体球状、直径28~30 nm、均含有分子量约为2 9k D外壳蛋白、3种相同的较大片段的双链RNA (即3400 bp的RNA1、3100 bp的RNA₂、2300 bp的RNA₃)和片段大小约400 bp的小RNA,石-B-2和石-B-D具有1100 bp的RNA4,在ELISA和琼脂双扩散试验中,3个分离物均与CMV-83抗血清有特异反应,初步认为这3个球状病毒分离物属于CMV,但它们具有狭窄的寄主范围,不感染心叶烟、蔓陀罗、番茄,在寄主反应、双链RNA4和卫星RNA的大小上明显不同于国内外报道的CMV株系或分离物,同时说明侵染甜菜的CMV可能存在着株系分化。     

黄瓜花叶病毒两个甜瓜分离物的基因组及其侵染性克隆

为明确黄瓜花叶病毒（cucumber mosaic virus,CMV）甜瓜分离物的分子变异情况及其侵染性,对2个甜瓜分离物CH99和XH18的基因组进行克隆、测序和分析,并通过构建全长cDNA克隆分析其侵染性。结果显示,黄瓜花叶病毒甜瓜CH99分离物3条RNA长度分别为3 356、3 049和2 211 nt,甜瓜XH18分离物3条RNA长度分别为3 381、3 048和2 217 nt。分离物CH99与XH18的核苷酸序列一致性为89.40%～95.80%,氨基酸序列一致性为90.00%～97.80%,CH99分离物与其他CMV分离物的核苷酸和氨基酸序列一致性平均值分别为79.23%～89.29%和73.52%～93.90%,XH18分离物与其他CMV分离物的核苷酸和氨基酸序列一致性平均值分别为79.81%～89.83%和74.02%～95.14%。遗传发育分析显示,这2个分离物均属于亚组IB成员。接种试验结果显示,分离物CH99和XH18的侵染性克隆构建成功,这2个分离物均能系统侵染本生烟、甜瓜和黄瓜,并在本生烟和甜瓜上引起较严重的症状,在黄瓜上引起的症状较弱,而二者均不能侵染西...     

引起番茄植株坏死病的病毒研究

 2004~2005年,在上海郊区夏番茄上连续发生严重的植株坏死病。表现为番茄植株矮化、顶端坏死、果实畸形和整株枯萎症状,并在叶柄和茎干上出现不规则坏死条斑,具有典型的病毒病特征。通过采集典型病叶、病果,进行病毒分离、dsRNA分析、寄主生物学研究、病毒纯化、病毒蛋白分析、组织病理学与形态学观察和ELISA检测,初步确定是由番茄花叶病毒(Tomato mosaic virus,ToMV)和黄瓜花叶病毒(Cucumber mosaic virus,CMV)侵染。经5次心叶烟单斑分离,获得N5分离物,对CP基因克隆测序的结果确定该分离物为ToMV。寄主反应测定显示,N5的寄主反应与常规ToMV株系存在明显区别,主要表现为常规番茄品种上出现严重坏死。进一步接种GCR品系番茄鉴定N5与ToMV-1株系相似。因此,作者认为,在上海地区番茄上流行并引起坏死病的主要病原可能是ToMV-1株系的1个变异株。     

马铃薯Y病毒HC-Pro第182位赖氨酸残基参与引起烟草叶脉坏死

 马铃薯Y病毒(potato virus Y,PVY)是侵染烟草的最重要病毒之一。不同PVY株系侵染烟草可引起不同症状,有些PVY株系可引起烟草叶脉坏死,严重影响烟草的产量和品质。PVY A12分离物属于NTN-NW株系,但侵染珊西烟(Nicotiana tabacum cv. Xanthi)不能引起叶脉坏死。分析发现,PVY分离物A12 HC-Pro第182和245位的氨基酸均为精氨酸(R),而能引起叶脉坏死的其他NTN-NW分离物HC-Pro的这2个位点均为赖氨酸(K)。PVY坏死株系N605的HC-Pro第182位和245位氨基酸也均为K。本研究通过定点突变,将N605侵染性克隆PVY^N605-GFP HC-Pro第245位残基K突变为R,突变体仍然能够引起叶脉坏死,而将其HC-Pro第182位残基K突变为R,突变体不能引起叶脉坏死。Western blot检测发现,2个突变体与野生型病毒CP蛋白在珊西烟中的表达水平没有明显差异。沉默抑制实验结果显示,2个突变体和野生型的HC-Pro抑制RNA沉默能力没有发生变化。初步确定PVY^N605-GFP HC-Pro第182残基K是引起叶脉坏死的关键氨基酸,推测PVY A12分离物不能引起烟草叶脉坏死的原因是其HC-Pro第182残基R引起的。     

系统侵染的番茄植株中黄瓜花叶病毒的时序变化

 采用实时荧光定量PCR (FQ-PCR)和DAS-ELISA方法,研究了22~26℃温室条件下番茄幼苗中黄瓜花叶病毒CNA株系(CMV-CNA)各基因组RNA组分及其外壳蛋白(CP)含量的动态变化,同时结合同期感病植株症状发展和病情指数,分析并探讨CMV各基因组RNA、CP以及病症显示程度之间的时间效应及其相关性。以18S rRNA为内参照,FQ-PCR相对定量分析结果显示:接种后5~30 d,CMV三分体基因组RNA在系统侵染的番茄组织中负荷量变化趋势大体一致,但是不同时期含量差异显著,均经历对数增长期、稳定期和回落期。其中,以RNA2负荷量变化情况最为平缓。DAS-ELISA检测结果显示:CP含量随接种时间延长而持续升高,但其对数增长趋势相对滞后于基因组RNA。番茄幼苗发病症状与CMV基因组RNA及CP负荷量的变化趋势大体一致,但症状表现时间相对滞后。CMV-CNA株系在番茄幼苗中以基因组RNA、CP以及病症显示先后次序出现高峰期,显示病毒基因组RNA及其CP在植物组织内负荷量的变化与植株症状表现并不同步。其动态变化规律将为研究CMV侵染机制,病毒与寄主互作及防病控病提供量化依据。     

我国部分地区常见农作物上黄瓜花叶病毒分离物核酸多样性分析

为明确我国黄瓜花叶病毒株系分化及系统进化基本情况,从湖南、新疆、青海和海南4省区采集1 367个样品对其进行酶联免疫和RT-PCR检测,并对分离获得的15个黄瓜花叶病毒(Cucumber mosaic virus,CMV)纯化分离物CP、MP、2b核苷酸序列进行相似性和进化树分析及生物学性状比较。结果表明,辣椒、龙葵和黄瓜的CMV阳性检出率较高,分别为54.13%、29.19%和18.46%。进化树分析显示CMV-Q5与CMV亚组II的亲缘性较高;CMV-N7为新发现的重组株系,其CP、2b基因属于CMV亚组IB,MP基因却属于CMV亚组II;其余13个分离物均属于CMV亚组IB。CMV-N7和CMV-Q5在系统寄主心叶烟和枯斑寄主苋色藜上引发的症状相似,但比对照株系CMV-P3613(IB)的发病时间要晚1~2 d,系统花叶较温和,枯斑较小。表明在以上4省区常见农作物上广泛流行的CMV存在分子变异。     

卫星RNA SatC382对辅助病毒的影响

 通过体外转录将黄瓜花叶病毒(CMV)卫星RNASatC382与不带卫星的黄瓜花叶病毒CNa株系进行假重组,获取带卫星的CMV重组株(CNa-SatC382)。经dsRNA提取及RT PCR检测,证实CNa和SatC382在假重组株中能稳定共存。测定CNa和CNa-SatC382的14种寄主生物学反应,并统计两者接种昆诺藜、假酸浆、心叶烟、西葫芦7、14、21、28d的病情指数,结果显示:带卫星和不带卫星的CMV在各供试寄主上表现的症状差别不明显,病情指数也无显著差异。由此推测卫星RNASatC382没有改变辅助病毒CMV-CNa株系对寄主症状的影响。     

利用黄瓜花叶病毒M和Fny株系 的假重组体分析致病关键因子

 用RT-PCR扩增黄瓜花叶病毒M株系（CMV-M）全长基因组cDNA,成功构建CMV-M RNA2和RNA3侵染性克隆后,与CMV-Fny基因组RNA交换得到3个假重组型病毒 （F1M2F3、F1F2M3、F1M2M3）。用F1M2F3、F1F2M3、F1M2M3分别侵染白肋烟,产生坏死环斑、轻微绿斑驳、明脉、黄白化和叶尖线性化等症状。根据假重组型病毒和野生型病毒的表观症状,分析引起各种症状的关键因子,初步判定：CP基因是诱导花叶症状的关键因子,CMV-Fny RNA2是诱导叶尖线性化的关键因子,CMV-M RNA2是诱导叶尖坏死斑关键因子。实时荧光定量PCR结果显示：野生株CMV-M、CMV-Fny和假重组体F1M2F3、F1F2M3、F1M2M3侵染烟草后引起的症状差异与病毒基因组RNA累积没有直接关系。     

1个小麦NBS类抗病基因同源cDNA序列的克隆与鉴定

 利用cDNA末端快速扩增技术对小麦抗叶锈病近等基因系TcLr35中所获得的抗病基因同源片段S2A2 5'端和3'末端序列进行扩增,并根据拼接序列设计特异性引物,进行全长基因的扩增,获得了1个通读的NBS类抗病同源基因S2A2 cDNA序列,该序列全长为3476 bp,编码866个氨基酸序列。经BLASTp比较,该片段含有NB-ARC保守结构域和多个LRR结构域,与已知植物抗病基因I2C-1、L6、RPS2等相应区域相一致。半定量RT-PCR分析表明,该基因在小麦叶片中为低丰度组成型表达。本研究在TcLr35小麦中成功获得了抗病同源基因,这为最终克隆小麦抗叶锈病基因Lr35奠定了基础。     

小西葫芦黄花叶病毒北京分离物的鉴定及其基因组3''端特性分析

在北京东郊自然感病的南瓜Cucurbita moschata上获得一病毒分离物（BJ-1），经生物学、血清学和分子生物学鉴定，确定为小西葫芦黄花叶病毒（Zucchini yellow mosaic virus，ZYMV）。为分析其基因组3’端特性，以发病叶片中提取的总RNA为模板，对基因组3’端进行RT-PCR扩增，产物克隆到pMD18-T栽体上进行序列分析，共测定了该病毒分离物包括全部CP基因在内的1269bp。该分离物CP基因由837个核苷酸组成，编码279个氨基酸。对包括该分离物在内的30个序列的760bp（含NIb基因3’端56bp和CP基因中的704bp）片段、NIb蛋白与CP蛋白的切割位点、蚜传必需基序的变异、寄主来源及地域来源进行了分析。结果表明，ZYMV不同分离物的基因分型与上述五个因素无明显关系。     

甘蔗黄叶病毒复制酶基因的克隆及序列分析

 The gene of RNA-dependent RNA polymerase (RdRP) was cloned by RT-PCR from Sugarcane yellow leaf virus-Fuzhou isolate (CHN-FJ1) and then cloned into pMD18-T vector. The sequence showed that the fragment comprised 1 212 nucleotides including part gene of ORF1 and ORF2. The ORF2 was involved the RdRP gene consisted of 995 nucleotides and encoded putative protein of 331 amino acids. Compared the nucleo-tide sequence and encoded putative protein of CHN-FJ1 with the other isolates from different countries, they shared the homology above 92.0%. Phylogenetic tree suggested that the sixteen isolates were classified into four types according to the amino acid sequence of the RdRP. One of the groups contained CHN-FJ1 and the other isolates from China, American, Brazil, Australia and Colombia;however, there was the closest relation between CHN-FJ1 and BRA-YL1 isolate from Brazil.     

The 3' terminal sequence of RNA1 of wheat spindle streak mosaic virus canadian isolate (WSSMV-C)

The sequence of the 3 terminal 1722 nucleotides (nts) of RNA1 of the type (Canadian) isolate of wheat spindle streak mosaic bymovirus (WSSMV-C) was determined. The sequence started within a single open reading frame (ORF), which was expected to encode the carboxyl terminus of the nuclear inclusion b protein (NIb) and the capsid protein (CP) of 294 amino acids, followed by a 3 untranslated region (UTR) of 237 nucleotides. The NIb and CP of WSSMV-C share 99 and 100% amino acid sequence identity with the corresponding proteins of WSSMV-French isolate (WSSMV-F), but only 89 and 77% with wheat yellow mosaic virus (WYMV-J), respectively. The 3UTR of RNA1 of WSSMV-C shares 94% nucleotide sequence identity with that of WSSMV-F but only 73% with WYMV-J and WYMV-Chinese isolate (WYMV-Chi). The results support the classification of WSSMV-C and WSSMV-F as strains of the same virus species which is distinct from WYMV.     

Complete Nucleotide Sequence of Ryegrass Mottle Virus : A New Species of the Genus Sobemovirus

The genome of Ryegrass mottle virus (RGMoV) comprises 4210 nucleotides. The genomic RNA contains four open reading frames (ORFs). The largest ORF 2 encodes a polyprotein of 947 amino acids (103.6 kDa), which codes for a serine protease and an RNA-dependent RNA polymerase. The viral coat protein is encoded on ORF 4 present at the 3′-proximal region. Other ORFs 1 and 3 encode the predicted 14.6 kDa and 19.8 kDa proteins of unknown function. The consensus signal for frameshifting, heptanucleotide UUUAAAC and a stem-loop structure just downstream is in front of the AUG codon of ORF 3. Analysis of the in vitro translation products of RGMoV RNA suggests that the 68 kDa protein may represent a fusion protein of ORF 2-ORF 3 produced by frameshifting. The protease region of the polyprotein and coat protein have a low similarity with that of the sobemoviruses (approximately 25% amino acid identity), while the RNA-dependent RNA polymerase region has particularly strong similarity (54 to 60% of more than 350 amino acid residues). The sequence similarities of RGMoV to the sobemoviruses, together with the characteristic genome organization indicate that RGMoV is a new species of the genus Sobemovirus. Received 28 June 2000/ Accepted in revised form 14 November 2000     

Characterization of symptom determinants in two mutants of cucumber mosaic virus Y strain,causing distinct mild green mosaic symptoms in tobacco

Two mutants of Cucumber mosaic virus, CMV(Y/GM1) and CMV(Y/GM2), which induced mild green mosaic symptoms in tobacco, were isolated from plants regenerated from tobacco leaves with yellow mosaic symptoms originally infected with the yellow strain of CMV [CMV(Y)]. Although the appearance of mild green mosaic symptoms in tobacco infected with CMV(Y/GM2) was unstable, CMV(Y/GM3) derived from CMV(Y/GM2) reproducibly induced mild green mosaic symptoms in tobacco similar to CMV(Y/GM1). A comparison of the deduced amino acid sequences of the coat proteins of CMV(Y), CMV(Y/GM1) and CMV(Y/GM3), showed single amino acid substitutions from Thr to Ile at position 124 in the CMV(Y/GM1) coat protein and from Val to Ile at position 111 in the CMV(Y/GM3) coat protein. When the amino acid at the 124 or 111 position in the CMV(Y) coat protein was changed to Ile at the cDNA level, CMV RNA3 transcribed in vitro from each cDNA induced mild green mosaic symptoms in tobacco after inoculation with in vitro transcribed CMV(Y) RNA1 and RNA2. The results indicated that amino acids at positions 111 and 124 in the coat protein were responsible for the phenotypic changes caused by the two CMV isolates.     

Amino Acid 129 of Cucumber mosaic virus Coat Protein Determines Local Symptom Expression and Systemic Movement in Tetragonia expansa, Momordica charantia and Physalis floridana

Local symptom expression and systemic movement of Cucumber mosaic virus (CMV) in Tetragonia expansa, Momordica charantia and Physalis floridana were mapped to the amino acid at position 129 of CMV coat protein (CP), using pseudorecombinants, chimeric RNAs, a site-directed mutant of RNA 3 and four strains of CMV : pepo-, SO-, MY17- and Y-CMV. Local and systemic symptoms caused by three strains, pepo-, SO- and MY17-CMV, and those by Y-CMV differed in the three host species. The three strains expressed local chlorotic spots at 24°C and systemic chlorotic spots and ringspots at 36°C, whereas Y-CMV developed local necrotic spots at 24°C but no systemic symptoms at 36°C in T. expansa. In M. charantia the three strains caused systemic chlorotic spots, whereas Y-CMV caused local necrotic spots. The three caused systemic mosaic and Y-CMV systemic necrosis in P. floridana. With pseudorecombinants combined with pepo- and Y-CMV RNAs, CMV RNA 3 was responsible for symptom expression and systemic infection. Inoculation with Y-CMV RNA 1, RNA 2 and chimeric RNA 3s exchanged CP gene fragments between pepo- and Y-CMV showed that NruI-XhoI fragment of CP was essential for symptom expression. Comparative analysis of the NruI-XhoI fragments revealed that only the amino acid at position 129 was common among the three strains but different from that of Y-CMV. Inoculation with a point mutant constructed by substituting one nucleotide resulting in an amino acid change from Ser to Pro at position 129 in Y-CMV CP verified the previous experiments. These results indicate that the amino acid at position 129 of CMV CP is the determinant for local symptom expression and systemic movement in the three host species. CMV CP containing Ser at position 129 may induce resistant responses in these plants. Received 29 June 2001/ Accepted in revised form 28 August 2001     

Nucleotide Sequence of the 3′ -terminal Region of Carnation vein mottle virus RNA

The 2326 nucleotides of the 3′-terminal region of Carnation vein mottle virus (CVMV) RNA, which included part of the nuclear inclusion b gene, the complete coat protein (CP) gene and the entire 3′-noncoding region (3′-NCR) were determined. The region encoding the CP gene is 843 nucleotides long and the deduced protein consists of 280 amino acids. A search of the EMBL and PIR databases showed that the amino acid sequence of CVMV CP most resembled that of Plum pox virus with a similarity of 67.9%. The 3′-NCR of CVMV RNA is 541 nucleotides long, second longest in the genus Potyvirus. These results indicate that CVMV is closely related to Plum pox virus but is a distinct species in the genus Potyvirus. Received 8 October 1999/ Accepted in revised form 9 January 2000     

香蕉相似穿孔线虫Rs-flp-14基因克隆与特征分析

类FMRF酰胺多肽(FMR Famide-like peptides,FLPs)在控制寄生性线虫侵染、取食和繁殖过程中起着重要作用。在防治线虫时,FLPs信号系统经常成为药物的作用靶标。本研究以香蕉相似穿孔线虫(Radopholus similis)为材料,用RT-PCR和RACE方法,获得了类FMRF酰胺多肽flp-14基因的cDNA全长序列,命名为Rs-flp-14。此基因cDNA序列全长为569bp,包括一个357bp的开放阅读框(0RF),编码含119个氨基酸的蛋白,分子量与等电点分别为12.85KD和9.41。序列分析表明Rs-flp-14编码2个FLP肽(2xKHEYLRFG),N端具有27个氨基酸残基组成的信号肽。Southern杂交显示其为单拷贝基因。cDNA与基因组DNA重叠分析表明基因包含三个内含子,四个外显子。聚类分析表明该基因与猪蛔虫的As-flp-14同源,相似度最高(64%)。原位杂交结果显示Rs-flp-14基因表达位置在线虫的神经环部位。本研究结果将为研究该基因功能奠定基础,并为以FLPs为作用靶标的防治线虫药物提供理论依据。