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1.
甘蔗花叶病毒福建分离物外壳蛋白基因的克隆及序列分析   总被引:3,自引:0,他引:3  
 A fujian isolate of Sugarcane mosaic virus named SCMV-FJ was isolated from infected sugarcane. Cloning and sequence analysis of the coat protein gene of this isolate was carried out. A pair of primers was designed and synthesized based on the nucleotide sequences of coat protein genes of sugarcane mosaic viruses reported. The coat protein gene of SCMV-FJ was amplified from the extracted total RNA of the infected sugarcane by using RT-PCR, and cloned into the pMD18-T vector. The sequencing result indicated that the cloned segment included a 1137 bp open reading frame(ORF) and a 228 bp 3' untranslated region, in which the ORF comprised the whole coat protein and part of the nuclear inclusion b. The nucleotide and the deduced amino acid sequences of the coat protein gene were compared with those of the other isolates or strains of SCMV subgroup reported in GenBank. The result showed that it shares 56.8%-97.1% and 55.3%-99.4% homology in nucleotide and the putative amino acid sequences, respectively, with the highest amino acid homology of 99.4% with SCMV-D. Thus it was identified as a SCMV-D. This experiment provided a rapid, sensitive and relatively inexpensive method for RT-PCR detection of SCMV. At the same time, the cloning of SCMV-FJ coat protein gene provided the foundation for plant gene engineering against SCMV.  相似文献   

2.
 The nucleotide sequence of coat protein (cp)gene of Sowbane mosaic virus (SoMV)was determined. The cp gene of SoMV consists of 726 nucleotides and encodes a putative protein of 241 amino acid re-sidues. Sequence comparison showed that SoMV was most closely related to Rubus chlorotic mottle virus compared to other sobemoviruses. A primer pair was designed for the detection of SoMV based upon the determined cp nucleotide sequence. An expected fragment with 510 bp could be obtained from SoMV, while no specific band was observed from the healthy control. The result showed that the RT-PCR assay with the primer pair was suitable for the specific detection of SoMV.  相似文献   

3.
 The nucleotide sequence of small coat protein (CPS) gene of Broad bean stain virus (BBSV) was determined and compared with other comoviruses. The CPS gene of BBSV consisted of 687 nucleotides and encodes a putative protein of 228 amino acid residues. The CPS sequence of BBSV and those of other comoviruses shared identities of 36.5%-58.9% and 35.2%-70.3% at the nucleotide and amino acid levels, respectively. The RT-PCR method specific for BBSV detection was developed based on the determined CPS sequence. The RT-PCR assay presented here allows, for the first time, rapid and specific detection of BBSV.  相似文献   

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5.
 Four isolates of Rice black-streaked dwarf virus (RBSDV) were collected from the maize plants showing rough dwarf symptom in Linyi and Tai'an,Shandong province.The S10 genomic sequences of these isolates were determined and compared with those of 14 other RBSDV isolates.All of the four sequences were 1 801 base pairs (bp) long including the 5'-UTR of 21 bp and the 3'-UTR of 103 bp.They all contained an open reading frame of 1 677 bp (22-1698),encoding the coat protein (CP) of 558 amino acids.The sequences of these four RBSDV isolates and those of the major cp gene of 14 other isolates available in the GenBank were divided into two groups in the phylogenetic tree.Recombination analysis indicated that the isolate Lym2 was likely a recombinant of isolates Lym1 and Zhjs.  相似文献   

6.
小西葫芦黄花叶病毒山东南瓜分离物的分子特性   总被引:2,自引:0,他引:2  
 Zucchini yellow mosaic virus (ZYMV) was detected by RT-PCR from pumpkin (Cucurbita moschata) plant showing yellowing and mosaic symptom from Liaocheng, Shandong Province. The 3'-termial 1 684 bp genomic sequence covered 633 bp of NIb encoding sequence, 840 bp of cp gene and 211 bp of 3'-untranslated region of the isolate ZYMV-Liaocheng was determined. The cp gene of ZYMV-Liaocheng shared identities of 81.4%-98.8% and 89.4%-99.5% at nucleotide and amino acid levels, respectively, with other ZYMV sequences available in the GenBank. Phylogenetic analysis indicated that ZYMV could be clustered to 6 genotypes. ZYMV-Liaocheng belonged to genotypeⅠ, which contained isolates from Asia, Europe and America. Genotypes Ⅲ and Ⅴ were unique and contained only isolates from East Asia. The isolates from East Asia had the highest variability.  相似文献   

7.
 ORFⅡ gene of Banana streak virus GuangDong isolate (BSV-GD) was amplified from a BSV-GD recombinant plasmid by PCR, and the gene was expressed by being cloned into prokaryote expression vector pET-28b (+). The fusion protein was about 16.5 kDa in size and was soluble with SDS-PAGE analysis. The purified protein was obtained by using the histidine labeling kit of N-terminus of protein. The antiserum was obtained by immunizing healthy rabbits with the purified protein. Western blot and ELISA analysis showed that the special antiserum of BSV possessed high titer, which was tested as 1:51 200. The study was a base for further research on BSV including ORFⅡ gene function and virus detection.  相似文献   

8.
草莓轻型黄边病毒3'末端序列多态性研究   总被引:1,自引:0,他引:1  
 The 930 bp segment in 3' terminal region of Strawberry mild yellow edge virus(SMYEV) genome was amplified by 3' rapid amplification of cDNA ends(RACE).Ten Chinese isolates were sequenced,and 7 of them were the same.Nucleotide and amino acid identities and phylogenesis were analyzed between Chinese isolates and 24 isolates from other regions of the world.Sequence analysis of the 878 nt stretch within 3' terminal region of SMYEV genome showed that nucleotide acid identities ranged from 79.5% to 100%,deduced amino acid sequences of coat protein gene identity were 86.4% to 100%.Phylogenetic analysis showed that all isolates of SMYEV fell into four clades.To a certain extent,the clades were related with the geological distribution of SMYEV.Chinese isolates SY01 and SY04 lay in the same clade with European and American isolates,but formed a small separate branch.Isolates SY03 and SY02,derived from Fragaria×ananassa cv.Changhong-2 and F.pentaphylla respectively,had a far relationship with other isolates and fell into one clade.They were likely to be the special isolates that existed only in China.  相似文献   

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10.
 YN80 was isolated from Amorphophallus rivieri Durieu showing mosaic and crinkle symptoms in Songming, Yunnan province. Flexuous filamentous particles were found in diseased leave sap and pinwheel inclusion bodies were found in the leave tissue. YN80 had positive reaction to universal antibody of Potyvirus by DAS-ELISA. 3'-terminal sequence of YN80 was cloned and sequenced. cp gene of YN80 consisted of 987 nt, encoded 328 aa (36.1 kDa). Sequence analysis showed that YN80 shared the highest identity (97.0%)with CP amino acid sequence of Dasheen mosaic virus (DsMV). These data indicated that YN80 was an isolate of DsMV. This is the first molecular identification of A. rivieri Durieu isolate of DsMV in China.  相似文献   

11.
甘蔗黄叶病毒外壳蛋白基因克隆及其实时荧光RT-PCR检测   总被引:1,自引:0,他引:1  
 甘蔗黄叶病毒(Sugarcane yellow leaf virus, SCYLV)引起的甘蔗黄叶病是一种新的全球性病毒病害。本文以YLSCPF1和YLSCPR591为引物,采用RT-PCR方法克隆了甘蔗黄叶病毒福建分离物(CHN-FJ1)外壳蛋白(CP)基因,编码196个氨基酸。分析不同地理来源的SCYLV病毒分离物cp基因核苷酸及其推导编码的氨基酸序列,同源性达95%以上。根据cp基因的保守序列,设计1对特异性引物和TaqMan探针,建立了SCYLV的TaqMan实时荧光RT-PCR方法。结果表明,检测下限为初始质粒模板DNA 1 000拷贝/μL(约3.61 fg/μL),比常规PCR方法的灵敏度提高100倍。检测甘蔗花叶病毒、宿根矮化病菌和黑穗病菌,没有典型的扩增曲线和无Ct值。应用实时荧光RT-PCR、常规RT-PCR和组织印迹免疫杂交(TBIA)对田间甘蔗叶片样品进行检测,阳性检出率分别为100%、61.5%和69.2%,表明该方法比常规RT-PCR和TBIA具有更高的灵敏度,适合于对SCYLV的检测。  相似文献   

12.
云南甘蔗花叶病病原检测及一个分离物的分子鉴定   总被引:3,自引:0,他引:3  
 调查表明甘蔗花叶病在云南发生普遍。电镜检测采自云南6个蔗区主栽品种上的28个甘蔗花叶病病样(分离物),其中25个病样的病叶汁液中观察到弯曲线状的病毒粒体,病叶组织中有风轮状和卷筒状内含体;对这25个分离物进行间接ELISA检测,16个与马铃薯Y病毒属抗血清呈阳性反应,其余呈阴性反应。根据蔗区及其主栽品种的不同,挑选7个分离物进行鉴别寄主测定,结果显示不同分离物鉴别寄主范围和致病性存在明显差异,分离物HH-1有范围最广的鉴别寄主和较强的致病性。克隆并测定HH-1基因组3'末端序列,序列分析发现HH-1的外壳蛋白(CP)基因共864个核苷酸,编码287个氨基酸,与高粱花叶病毒(Sorghum mosaic virus,SrMV)余杭分离物CP氨基酸序列的同源性最高,为97.7%;因此推定HH-1属于SrMV的一个新分离物。  相似文献   

13.
 从采集于海南儋州地区表现黄脉症状的长蒴母草(Lindernia anagallis)上分离到病毒分离物L2, DNA-A全序列分析结果表明, 全长2739个核苷酸(nt)(GenBank登录号:AY795900), 共编码6个ORF, 其中病毒链编码AV1(CP)、AV2, 互补链编码AC1、AC2、AC3、AC4。利用BLAST程序对DNA-A进行分析表明, 与L2 DNA-A有同源关系的病毒均为双生病毒科(Geminiviridae)菜豆金色黄花叶病毒属(Begomovirus)成员。进一步比较发现, L2 DNA-A与我国广东报道的广东番茄曲叶病毒(Tomato leaf curl Guangdong virus, ToLCGuV)(AY602165)全基因组核苷酸序列的同源性最近, 仅为77.0%, 说明L2为Begomovirus中的一个新种, 命名为长蒴母草黄脉病毒(Lindernia anagallis yellow vein virus, LAYVV)。与L2的IR区及各基因编码的氨基酸序列有最高同源性的病毒均来源于亚洲。利用DNA-B特异引物和DNA-β的特异引物, 均未检测到DNA-B和卫星DNA-β的存在。  相似文献   

14.
南方菜豆花叶病毒(Southern bean mosaic virus,SBMV)是我国二类检疫性有害生物,以南方菜豆花叶病毒日本分离物(SBMV-J)总RNA为模板,采用RT-PCR方法扩增病毒外壳蛋白基因及其上游基因的cDNA片断并将其克隆到pMD18-T载体上。序列分析结果表明:SBMV-J cp基因由801个核苷酸组成,编码266个氨基酸,SBMV-J与其它分离物及株系cp基因的核苷酸序列同源性为83%~97%,氨基酸序列同源性为86%~97%。由于SBMV各分离物及株系cp基因的同源性较低,难于设计出较长的普通PCR引物。通过较短引物设计和TaqMan-MGB探针技术,建立了SBMV的实时荧光RT-PCR一步检测方法。该方法的检测低限是0.16 pg,最佳检测总RNA的量是0.16 ng。  相似文献   

15.
 甘薯褪绿斑病毒(Sweet potato chlorotic fleck virus,SPCFV)是侵染甘薯的主要病毒之一。本研究利用RT-PCR方法克隆了SPCFV中国4个分离物的外壳蛋白(CP)基因。序列分析表明,cp基因全长900 bp,编码299个氨基酸残基。4个分离物cp基因的核苷酸序列一致性为78.3%~89.9%,推导的氨基酸序列一致性为91.3%~95.7%,存在较大的分子变异。不同分离物CP氨基酸序列N末端的第3-32位氨基酸为多变区。将四川分离物的cp基因克隆到原核表达载体pET-28a(+)上,SDS-PAGE分析表明,经IPTG诱导,cp基因在大肠杆菌BL21(DE3)中得到了高效表达。以表达的蛋白为抗原免疫家兔,制备了SPCFV CP的特异性抗血清。ACP-ELISA检测结果表明,制备的抗血清效价达1∶128 000,可用于田间甘薯样品的检测。  相似文献   

16.
为明确我国油桃茎痘相关病毒(nectarine stem-pitting-associated virus,NSPaV)基因组的分子特征,利用RT-PCR和RACE技术对NSPaV中国分离物NSPaV-T04基因组进行克隆,采用最大似然法对得到的NSPaV基因组序列和GenBank中的5条NSPaV基因组序列构建系统发育树,应用RDP软件对NSPaV基因组序列进行重组分析。结果表明:中国分离物NSPaV-T04基因组序列全长为4 991 nt,包括4个开放阅读框(open reading frame,ORF),其中ORF1与ORF2共同编码1个RdRp P1-P2融合蛋白,ORF3编码1个CP,ORF5与ORF3共同编码CP通读蛋白。系统发育树和序列比较分析结果显示,中国分离物NSPaV-T04(MN095353)与美国分离物NSPaV/12P42(KT273410)的亲缘关系最近,核苷酸序列同源性最高,为96.4%;NSPaV-T04的RdRp P1变异较大,与GenBank中5条NSPaV基因组核苷酸序列的同源性为90.5%~96.1%,CP较为保守,核苷酸序列的同源性为96.6%~98.7%。重组分析结果显示,中国分离物NSPaV-T04为鉴定的一个重组体(韩国分离物SK)的亲本序列,表明中国分离物NSPaV-T04可能是一个实际的重组体。  相似文献   

17.
 多花黑麦草斑驳病毒(Ryegrass mottle virus,RGMoV)属南方菜豆花叶病毒属,是牧草病毒病的重要病原。利用反转录技术合成和扩增了RGMoV RNA的cDNA。将cDNA克隆在载体pUC18上,对RGMoV的基因组RNA作序列分析。RGMoV RNA是一个正义单链RNA分子,全长4 210个核苷酸,包含4个开放阅读框架5'非翻译区包含99个核苷酸,3'非翻译区有198个核苷酸。RGMoV ORF的结构和南方菜豆花叶病毒以及水稻黄斑病毒的结构一样。ORF1编码1个14.6 kD的蛋白质,这个蛋白质的功能还不清楚;ORF2的产物由947个氨基酸组成,分子量为103.6 kD;ORF3编码1个19.8 kD的蛋白质;ORF4编码1个25.6 kD的蛋白质,通过N末端氨基酸分析,确认ORF4为病毒外壳蛋白。RGMoV RNA的全序列以及染色体结构已被GenBank登录,登录号分别为AB040446和NC_003747。  相似文献   

18.
南瓜蚜传黄化病毒湖北和云南分离物的部分序列分析   总被引:2,自引:0,他引:2  
 本研究从带有黄化症状的南瓜叶片中提取总RNA,用RT-PCR方法扩增得到来自湖北和云南的南瓜蚜传黄化病毒(CABYV)2个分离物的1375nt特异性核苷酸片段。分别将PCR产物插入到克隆载体pMD19-T并转化大肠杆菌DH5α,对筛选到的阳性克隆进行了序列测定和分析(GenBank登录号为EF488996和EF488997)。所获片段含有部分复制酶基因576nt,非编码区199nt和完整的CP基因600nt,编码一个由199个氨基酸组成的分子量约为22kDa的结构蛋白。湖北和云南分离物与法国分离物、意大利分离物、西班牙分离物、北京分离物和上海分离物的CP基因核苷酸序列和推测氨基酸序列的同源性分别为93.1%~98.5%和91.4%~98.5%。  相似文献   

19.
为进一步筛选高效寄生线虫真菌和阐明其寄生线虫卵的机理,本研究从湖北省烟草南方根结线虫雌虫分离到1株具高效生防潜力的菌株HBF1。形态学、rDNA-ITS和翻译延长因子tef1-α序列分析鉴定该菌为长梗木霉菌Trichoderma longibrachiatum,其对南方根结线虫卵第10 d寄生率为80.45%。通过简并引物设计和RACE技术克隆其几丁质酶基因,分析该基因序列及与其他几丁质酶的同源性。该菌是1株可以产生几丁质酶的南方根结线虫卵寄生真菌,第10 d几丁质酶的活性达到高峰,为24.88μmol/h/mL。本研究首次从长梗木霉HBF1菌株中克隆到1个几丁质酶基因TlChi46,该基因DNA全长1 793 bp,含3个内含子和1个1 272 bp的开放阅读框,编码423个氨基酸,理论分子量45.9 kDa,等电点5.23。同源性比对表明和昆虫寄生菌几丁质酶的亲缘关系较远。从长梗木霉HBF1中克隆得到的几丁质酶基因编码的几丁质酶的功能域可供进一步研究,高效产几丁质酶并有效寄生南方根结线虫卵的长梗木霉对南方根结线虫具有良好的生防潜力。  相似文献   

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