强降雨对粤西凡纳滨对虾养殖池塘微生物群落的影响

于强台风"莫拉菲"环流云系带来的持续强降雨天气前后(2009年7月14日和7月28日),对广东省茂名市电白县凡纳滨对虾半集约化养殖土池的水样和泥样进行调查,研究施用微生态制剂和未施用微生态制剂的虾池水体及底泥中的异养细菌、弧菌和芽孢杆菌的变化情况,并利用BIOLOGECO微板对水体和底泥的微生物群落代谢变化进行探讨。结果发现,定期施用微生态制剂的虾池水体和底泥中的细菌数量和微生物群落功能在强降雨前后基本保持稳定;未施用微生态制剂的虾池在强降雨后,水体的弧菌数升高,Simpson指数和McIntosh指数显著降低(P0.05),水体和底泥微生物群落对碳源的利用率变化明显。研究结果表明,与施用微生态制剂的虾池相比较,未施用微生态制剂的虾池在强降雨后,水体及沉积物环境波动变化明显,强降雨对其水域环境产生很大的影响。因此建议在对虾养殖过程中定期施用微生态制剂,并针对恶劣天气采取有效措施,以稳定虾池水体及沉积物的微生物生态。     

长毛对虾海水养殖环境以及虾肠道微生物群落结构研究

为了研究长毛对虾养殖环境以及对虾肠道微生物种群结构的特征,实验分别采集养殖区进水口水体、养殖池底泥、养殖池水体以及长毛对虾肠道样品,采用构建16S rRNA基因克隆文库的方法对不同样品间的微生物群落组成进行了研究。结果表明,4组样品中共获得621条序列,操作分类单元(OTU)总数达212个,表明养殖环境微生物群落结构具有高度的多样性。从遗传进化树分析发现,进水口水体中细菌优势种群为蓝细菌(53.97%)、α-变形杆菌(13.76%)和γ-变形杆菌(10.58%);养殖池水体细菌优势种群为蓝细菌(33.55%)、γ-变形杆菌(14.84%)、厚壁菌(14.19%)、拟杆菌(12.26%)和α-变形杆菌(9.68%);养殖池底泥细菌优势种群大部分属于厚壁细菌(79.12%);对虾肠道细菌优势种群为厚壁细菌(75.79%)、梭杆菌(13.68%)和γ-变形杆菌(10.53%)。在目分类水平上,养殖池底泥、养殖池水体和对虾肠道中芽孢杆菌占有较高的比例,分别占克隆数的69.78%、13.55%和72.63%;进水口水体和养殖池水体中红细菌的比例较高,分别占克隆数的10.05%和9.68%。本研究分析了养殖环境以及对虾肠道微生物的群落结构,揭示微生物从水源到对虾肠道内的演替规律。总体上,本养殖系统微生物群落结构良好,但在养殖池水体和对虾肠道中也检测到黄杆菌类群和少量的弧菌。本研究有助于了解养殖环境对于对虾肠道微生物组成的影响,并为长毛对虾病害的预防提供参考。     

凡纳滨对虾养殖环境及肠道微生物群落特征分析

为探究凡纳滨对虾养殖过程中其肠道和养殖环境微生物群落的结构及变化，本实验采用Illumina MiSeq测序平台，基于16S rRNA基因的测序结果，对46和86 d虾龄的凡纳滨对虾肠道以及养殖水样、底泥中的微生物群落进行分析。结果显示，86 d时微生物Shannon-Wiener多样性指数显著高于46 d，水样中的Shannon-Wiener指数显著低于底泥和凡纳滨对虾肠道；有35个门、70个纲、152个目、274个科以及420个属在水样、底泥和虾肠道中均能检测到，其中虾肠道和底泥间共有菌类较水样中更多。微生物群落随养殖时间增加发生变化，46与86 d的差异性门类为放线菌门、绿菌门、丝状杆菌门、浮霉状菌门和TM6，相对丰度随时间增加而增高。水样、底泥和虾肠道中有相对固定的优势菌群，在水样、底泥和虾肠道中主要的门类均为变形菌门、拟杆菌门和放线菌门，优势纲类为α变形菌纲、β变形菌纲以及放线菌纲，除此以外，虾肠道与底泥共有的优势纲为δ变形菌纲、γ变形菌纲以及芽单胞菌纲；从目、科、属的分类水平上看，水样、底泥和虾肠道中菌类相对丰度各异，鲜有明显重叠的优势菌类，在水样、底泥和虾肠道中均为一种未分类的属占优势地位，水样中优势属为hgcI_clade，底泥和虾肠道中优势属为Ambiguous_taxa。研究结果进一步解释了虾肠道和环境微生物群落结构之间的相关性以及随虾龄增长呈现的差异性。     

Characterization of bacterial community in intestinal and rearing water of Penaeus monodon differing growth performances in outdoor and indoor ponds

Penaeus monodon provides a high‐quality protein source for humanity, and pond cultured shrimp often presents asynchronous growth. Microbial communities are important for the digestion and immunity of shrimp. Therefore, in this study, we investigated the bacterial characteristics of the intestine and rearing water of asynchronously growing P. monodon that were cultured in outdoor and indoor pond respectively. The results showed that the bacterial community of the rearing water was more complex than that of the intestine; the fast‐growing shrimp in the indoor pond had higher intestinal bacterial diversity. Besides, the dominant bacterial composition of the water was more complex than that of the intestinal. Specifically, the abundance of Proteobacteria in the intestine was consistent with the growth performance of shrimp in the outdoor pond, which was exactly the opposite in the indoor pond. At the genus level, two cyanobacteria, Limnothrix and Cyanobium PCC‐6307, were dominant in the indoor and outdoor water respectively. In the outdoor pond, Bacillus was dominant in the slow‐growing shrimp intestines, while Vibrio was dominant in the fast‐growing shrimp. The intestinal microbes of the fast‐growing shrimp had higher proteasome metabolic capacity. These results can provide new insights into microbiome characteristics involved in the asynchronous growth of shrimp.     

Bacterial composition,abundance and diversity in fish polyculture and mussel–fish integrated cultured ponds in China

Bacterial community and abiotic environmental parameters in twelve freshwater aquaculture ponds were analysed. According to the major component of stocked animals, the ponds were grouped into four types: black carp Mylopharyngodon piceus, largemouth bass Micropterus salmoides, yellow catfish Pelteobagrus fulvidraco and pearl mussel Hyriopsis cumingii ponds. Each type of pond was stocked with three species of Chinese carps (silver carp, bighead carp and gibel carp) to form a unique mode of fish polyculture or mussel–fish integrated culture. The bacterial composition was identified using 16S rDNA sequencing. Totally, 3701 and 11 150 operational taxonomic units (OTUs) were identified from the water and sediment samples respectively. The number of OTUs, abundance‐based coverage estimator, Chao1 index and Shannon diversity index were lower in the water column than in the sediment, suggesting that diversity and stability of bacterial community were higher in the sediment. In the water column, Proteobacteria, Actinobacteria and Bacteroidetes dominated at the phylum level, and 26 dominant genera were identified. In the sediment, Proteobacteria, Chloroflexi, Bacteroidetes, Acidobacteria and Nitrospirae dominated at the phylum level, and 25 dominant genera were identified. Bacterial compositions between the ponds with different aquaculture modes were similar at the phylum levels, but varied at the genus levels. The bacterial composition in the ponds was correlated with hardness, ammonia and total nitrogen in the water column. This study indicates that the type of aquaculture mode is a factor regulating the microbial community, which provides an insight towards microbial management through probiotic manipulation in pond culture.     

Evaluation of carrying capacity for shrimp pond culture with integrated bioremediation techniques

The integrated multi‐trophic aquaculture (IMTA) is a semi‐artificial habitat optimization ecosystem by co‐culture species from multiple trophic levels, in which farm waste produced by species of a higher trophic level is a nutrition source for species of a lower trophic level. However, in system construction it is essential to distinguish the roles of aquaculture organisms from different trophic levels and optimize the aquaculture capacity allocation. With this objective, a carrying capacity evaluation model for shrimp culture with integrated bioremediation techniques was developed, and the efficiency to repair the aquaculture pond environment was evaluated. Scenario simulations were conducted to assess the shrimp culture capacity for optimal economic and ecological benefits. The sensitivity analysis of the model indicated that changes in bivalve biomass had no significant impacts on the concentration of total nitrogen (TN) in the system, and macroalgae were more sensitive to the changes in TN than biofilters did. In conclusion, 1,500,000 Litopenaeus vannamei co‐cultured with 15,000 kg Crassostrea gigas and 1,125 kg Gracilaria lemaneiformis per hectare would bring maximum integrated benefit, and the use of integrated bioremediation techniques can make shrimp pond culture a virtuous cycle incorporating both production and restoration.     

应用高通量测序技术分析拟穴青蟹肠道及其养殖环境菌群结构

采用基于Illumina Hi Seq测序平台的高通量测序技术,对拟穴青蟹(Scylla paramamosain)肠道及其养殖池塘水体、底泥中细菌种类及丰度进行了研究。测序结果显示,3个样品共获得有效序列234575条,可聚类于2812个分类操作单元(OTUs),归属于拟穴青蟹肠道、养殖水体、池塘底泥样品的操作分类单元(OTU)个数分别为453、706和2547,其中有184个OTU均能在3个样品中检测到,在青蟹肠道和养殖水体、青蟹肠道和池塘底泥中分别检测到197和309个共有OTU。物种注释结果显示,拟穴青蟹肠道中优势细菌种类为变形菌门(Proteobacteria)(39.96%)、柔膜菌门(Tenericutes)(23.09%)和厚壁菌门(Firmicutes)(16.58%);养殖水体中优势细菌种类为变形菌门(63.02%)、放线菌门(Actinobacteria)(24.96%)和拟杆菌门(Bacteroidetes)(8.41%);池塘底泥中优势细菌种类为变形菌门(75.23%)、拟杆菌门(5.72%)和放线菌门(3.83%)。此外,对各样品中丰度最高的前10位OTU分析显示,不同样品中占优势地位的10种细菌在数据库(SILVA)缺乏相关已知序列,并且各样品中的优势细菌种类完全不同。实验结果表明拟穴青蟹肠道与其池塘养殖环境中菌群结构存在着密切的相关性,但肠道菌群同时具有一定的独立性,其优势细菌种类与养殖环境中优势细菌种类无关。本研究旨在为拟穴青蟹健康养殖和微生态调控提供实验依据。     

不同地区稻虾综合种养系统的微生物群落结构分析

为研究不同地区稻虾综合种养系统的环境及克氏原螯虾肠道的细菌群落结构差异,为改进不同地区稻虾综合养殖策略提供依据,采用Illumina Miseq高通量测序技术,研究了武汉、永州和韶关地区稻田养殖克氏原螯虾的水体、底泥及虾肠道细菌群落结构,并对水体、肠道菌群与环境因子之间的关系进行了分析。结果显示,武汉地区稻虾综合种养系统的水体、底泥及克氏原螯虾肠道细菌群落的多样性均大于永州地区和韶关地区。武汉地区的稻虾综合种养系统的水体及底泥的细菌群落结构与永州地区和韶关地区均相似,其中水体的优势菌门均为放线菌门、蓝细菌门、变形菌门和拟杆菌门;底泥的优势菌门均为变形菌门。武汉地区的克氏原螯虾肠道的优势菌门为变形菌门、厚壁菌门和拟杆菌门;优势菌属为柠檬酸杆菌属(Citrobacter,10.85%)、气单胞菌属(Aeromonas,9.88%)和[Anaerorhabdus]＿furcosa＿group (8.43%)等。永州地区的克氏原螯虾肠道的优势菌门为厚壁菌门和放线菌门;优势菌属为ZOR0006 (9.78%)、拟杆菌属(Bacteroides,5.41%)和[Anaerorhabdus]＿fur...     

冻融期刺参养殖池塘沉积物菌群结构特征及其影响因素

本研究以我国北方典型岸基半开放刺参(Apostichopus japonicus)养殖池塘为对象,利用高通量测序技术构建冻融期刺参养殖池塘沉积物菌群16S rRNA基因测序文库,解析封冰期、融冰期和化冰期刺参养殖池塘沉积物菌群结构特征,并查明影响菌群结构的主导环境因子。结果显示,冻融期刺参养殖池塘沉积物菌群丰度和多样性表现为整体下调趋势,在融冰初期呈现显著性波动(P<0.05)。冻融期刺参养殖池塘沉积物菌群结构呈现显著性差异,封冰期、融冰期和化冰期差异菌群分别隶属于厚壁菌门(Firmicutes)、酸杆菌门(Acidobacteria)和软壁菌门(Tenericutes)。尽管不同阶段微生物相对丰度比例不同,但第一优势菌门均隶属于变形菌门(Proteobacteria),相对丰度高于49.04%;次优势菌门则呈现出显著性变化,其中,封冰期为拟杆菌门(Bacteroidetes),融冰期为绿弯菌门(Chloroflexi)和放线菌门(Actinobacteria),化冰期为浮霉菌门(Planctomycetes)。环境因子与菌群相关性分析表明,冻融期刺参养殖池塘沉积物菌群结构与环境因子具有显著相关性(P<0.05),温度、盐度、总氮和总有机碳是沉积物菌群的主导环境因子。本研究将为刺参养殖池塘精细化管理提供理论依据。     

凡纳滨对虾白便综合征发生与环境因子、机体免疫酶活性和微生物的相关性

为系统解析凡纳滨对虾白便综合征 (white feces syndrome，WFS)的发生与环境因子、微生物因子、宿主免疫力和水体微生物群落组成的关系。实验利用水体理化因子、可培养细菌、对虾机体免疫酶活性以及高通量测序等检测技术对健康与患WFS的池塘养殖凡纳滨对虾进行比较分析。结果显示，与健康组相比，患病池塘的水温、溶解氧 (DO)、pH、盐度等水质理化因子波动趋势相似，波动范围分别为26.1~29.0 °C、4.26~6.08 mg/L、8.39~8.73和40~49，患病组DO和盐度比健康组高；健康组对虾肝胰腺内可培养细菌和弧菌含量为1.19×10⁵~7.70×10⁵和8.8×10³~1.96×10⁴ CFU/g，弧菌占比为2%~16%，患病组对虾肝胰腺内可培养细菌和弧菌含量在3.80×10⁵~2.51×10⁶和2.02×10⁵~1.49×10⁶ CFU/g范围内，比健康组高15~113倍，弧菌占比在55%~70%。碱性磷酸酶 (AKP)、酸性磷酸酶 (ACP)、溶菌酶 (LZM)、超氧化物歧化酶 (SOD)和酚氧化酶 (PO)活性在健康组内为1.21~5.64、9.17~15.25、3.56~7.43、4.83~6.70及3.10~4.55 U/mg，在患病组内为2.12~5.39、19.22~26.96、19.73~26.85、3.00~4.14及7.76~9.21 U/mg。比较分析表明，WFS的发生与可培养细菌含量、弧菌占比、ACP、LZM、PO的相关性较强。高通量测序分析表明，患病组水体菌群结构的Ace和Chao指数呈一定程度下降趋势，PCoA指数偏离度较高，放线菌门、变形菌门相对丰度降低，拟杆菌门、蓝藻门相对丰度显著升高；RDA关联分析表明，盐度、溶解氧、虾体细菌、虾体弧菌、水体细菌是影响患病对虾水体菌群结构组成的重要因子。相关研究结果为解析养殖生产中对虾WFS发生机制提供数据支撑，并为WFS的临床防控奠定理论基础。     

Microbial communities in sea cucumber (Apostichopus japonicus) culture pond and the effects of environmental factors

This study investigated microbial community composition as well as their correlation with environmental factors of Apostichopus japonicus culture ponds in northern China by 16S rRNA gene amplicon sequencing. The results showed that microbiota richness varied consistently with diversity in the pond ecosystem. Microbiota richness and diversity were highest in sediment, followed by gut of A. japonicus and water. The dominant bacterial phylum in the pond ecosystem is Proteobacteria. Gammaproteobacteriaeria and Flavobacteria are two dominant bacterial classes in the ecosystem. There is significant difference (p < 0.05) between dominant bacterial communities at the levels of order, family and genus. There is also remarkable regional difference (p < 0.05) between microbial community composition in the pond ecosystems. Specifically, microbial community composition in Changhai and Yingkou show a high similarity, so do those of Laoting and Rushan. According to the redundancy analysis of the microbial community composition and pond environmental factors, chemical oxygen demand is the dominant environmental factor determining microbial community composition in pond water; sulphide has the greatest influence on the microbial community composition in pond sediment; the rest of environmental factors have varied influence on microbial community composition in pond ecosystems.     

尼罗罗非鱼肠道及养殖环境中菌群结构与链球菌病的相关性

为研究尼罗罗非鱼肠道和池塘养殖环境中菌群结构变化与链球菌病暴发的相关性,实验采用16S r DNA高通量测序方法对比分析发病和健康池塘水体、底泥和尼罗罗非鱼肠道菌群的结构特征。结果显示,底泥中微生物多样性最高,水体和肠道中微生物多样性次之;肠道菌群与水体中菌群的相似性较高,而与底泥中菌群相似性较低;发病组的尼罗罗非鱼肠道和池塘底泥中微生物的多样性均低于健康组,而发病组池塘水体中微生物多样性高于健康组。OTU聚类分析发现,发病与健康尼罗罗非鱼肠道微生物差异极显著,大部分健康尼罗罗非鱼肠道微生物样品单独聚为一支。菌群结构组成分析结果表明,虽然发病组和健康组水体或底泥中优势菌群结构组成的差异较小,但在非优势菌群中存在一定差异,发病组水体中变形菌门和梭杆菌门的比例显著高于健康组水体,疣微菌门和浮霉菌门的丰度显著低于健康组水体;发病组池塘底泥中厌氧粘细菌属、甲烷丝菌属和枝芽孢菌属等具有降解有机质和生态修复功能,菌群的丰度显著低于健康组底泥,而具有致病能力的曼氏杆菌属丰度却显著高于健康组底泥。发病组尼罗罗非鱼肠道菌群中链球菌属、分枝杆菌属和曼氏杆菌属等致病菌群的丰度显著高于健康组尼罗罗非鱼肠道,而乳球菌属、鲸杆菌属和红球菌属等益生菌的丰度显著低于健康尼罗罗非鱼肠道。无乳链球菌普遍存在于发病和健康养殖环境,以及尼罗罗非鱼肠道中,无乳链球菌的丰度在发病和健康养殖环境之间无显著差异,但其在发病尼罗罗非鱼肠道中的丰度要显著高于健康组。研究表明,尼罗罗非鱼链球菌病发病池塘水体和底泥中有益菌丰度降低和致病菌丰度的升高反映其养殖环境出现恶化,尼罗罗非鱼链球菌病的暴发与肠道微生态平衡破坏后无乳链球菌丰度增加密切相关,但肠道中无乳链球菌丰度的剧增与养殖水体和底泥中该病原菌的丰度水平之间并无直接关联。     

Comparison of microbial community structures in intensive and extensive shrimp culture ponds and a mangrove area in Thailand

ABSTRACT:   A pelagic bacterial community structure was examined in experimental intensive shrimp culture ponds that have a shrimp–mangrove complex aquaculture system, an extensive shrimp culture pond and a mangrove area in Thailand by denaturant gradient gel electrophoresis analysis of polymerase chain reaction amplified partial 16S rRNA genes. Bacterial community structure in the intensive shrimp culture ponds was distinguishable from that of the mangrove area. In the extensive shrimp culture pond, the bacterial community structure resembled that in the mangrove area, but bacterial abundance was as great as that in the intensive shrimp culture ponds. Among the intensive shrimp culture ponds, the bacterial community structure was different between a closed culture system and a shrimp–mangrove complex culture system. Moreover, the bacterial community structure in mangrove planted ponds was close to those in the intensive shrimp culture ponds when shrimp culture was conducted, but it was close to those in the mangrove areas without shrimp culture. These results suggest that intensive shrimp culture with shrimp feed input affects the bacterial community structures in pond water.     

Effects of a yeast‐based additive on growth and immune responses of white shrimp,Litopenaeus vannamei (Boone, 1931), and aquaculture environment

A 60 days feeding experiment was conducted to determine the effects of YK‐6 (a yeast culture feed supplement) on growth and immune responses of white shrimp, Litopenaeus vannamei and aquaculture environment in commercial scale farms composed of nine ponds. Three treatments (control, Diet 1 and Diet 2) were designed to contain YK‐6 levels of 0.0, 1.0 and 1.5 g kg^?1 respectively. At the end of the test, the mean production of Diet 1 (0.649 ± 0.030 kg m^?2) and Diet 2 (0.648 ± 0.033 kg m^?2) were significantly higher than that of the control by 29.5% and 29.3% respectively. The feed conversion ratio decreased significantly by 12.3% (Diet 1) and 8.5% (Diet 2) compared with the control group respectively. The environmental indices indicate that the quality of water and pond sediment was improved. The endotoxin concentrations, the number of Vibrios and heterotrophic bacteria in the shrimp intestine of the treatment groups were significantly lower than that of the control, particularly in the later stage of the farming period. The YK‐6 extended positive effects on growth, improved sediment quality, reduced endotoxin in shrimp intestine, and enhanced activities of lysozyme and phenoloxidase.     

室内集约化养虾池以低频率运转水处理系统调控水质效果及氮磷收支

采用低频率运转循环水处理系统(含粗滤器、臭氧仪、气液混合器,蛋白分离器、暗沉淀池等)联用池内设施(微泡曝气增氧机与净水网)开展凡纳滨对虾室内集约化养殖实验。研究了养虾池以水处理系统调控水质效果及氮磷收支。结果表明,养虾水经系统处理后,NO₂-N(53.4%～64.5%)、COD_Mn(53.4%～94.4%)与TAN(31.6%～40.4%)被显著去除,有效改进虾池水质;养殖周期内未换水与用药,虾池主要水化指标均控制在对虾生长安全范围,7号实验池(100 d)与8号对照池(80 d)主要水化指标变化范围:DO分别为 5.07～6.70 mg/L和4.38～6.94 mg/L,TAN 0.248～0.561 mg/L和0.301～0.794 mg/L,NO₂-N 0.019～0.311 mg/L和0.012～0.210 mg/L,COD_Mn 10.88～21.22 mg/L和11.65～23.34 mg/L。7号池对虾生长指数优于8号池(80 d虾病暴发终止),单位水体产量分别为1.398 kg/m²与0.803 kg/m²。氮磷收支估算结果:7号与8号池饲料氮磷分别占总收入:氮93.70%与92.37%,磷98.77%与99.09%;初始水层与虾苗含氮共占总收入6.30%与7.63%,磷共占1.23%与0.91%。总水层(含排污水)氮磷分别占总输出:氮56.45%与59.86%,磷53.26%与55.79%;收获虾体氮磷分别占总输出:氮37.07%与31.94%,磷21.37%与13.11%。7号池饲料转化率较高;池水渗漏与吸附等共损失氮磷分别占总输出:氮7.00%与9.34%,磷25.37%与31.10%。实验结果表明,虾池以低频率运转循环水处理系统联用池内设施可有效控制水质与虾病,具较高饲料转化率。     

应用高通量测序技术分析大菱鲆幼鱼肠道及其养殖环境的微生物群落结构

采用基于Illumina测序平台的高通量测序技术,对大菱鲆(Scophthalmus maximus)幼鱼肠道及其养殖水体、生物饵料中细菌种类及丰度进行研究。测序结果显示,养殖水体、生物饵料和大菱鲆幼鱼肠道等19个样品共获得有效序列547621条,可聚类于3771个可分类操作单元(OTUs),归属于养殖水体、生物饵料、健康幼鱼和发病幼鱼的操作分类单元(OTU)个数分别为3038、1090、87和777,其中,健康幼鱼与生物饵料、健康幼鱼与养殖水体特有的OTU个数分别为57和0,发病幼鱼与生物饵料、发病幼鱼与养殖水体特有的OTU个数分别为481和31。表明幼鱼肠道微生物多样性与生物饵料密切相关。根据细菌注释结果,拟杆菌门(Bacteroidetes)、厚壁菌门(Firmicutes)和变形菌门(Proteobacteria)在大菱鲆幼鱼肠道中占优势地位,其中,健康幼鱼肠道微生物共聚类为8个门,发病幼鱼的肠道微生物可聚类为19个门。与健康幼鱼相比,发病幼鱼肠道门水平上的3种主要优势菌群落结构出现失衡。此外,对各样品中丰度最高的100位OTU分析显示,幼鱼肠道优势菌种类与生物饵料中的优势菌种类密切相关,而每个发病幼鱼肠道优势菌种类具有一定的独立性。本研究旨在为大菱鲆健康养殖和微生态调控提供实验依据。     

对虾工厂化养殖中浮游动物群落结构的变化规律

为了掌握对虾工厂化养殖过程中浮游动物的变动规律，有效管理水体环境质量，提高养殖效益，于2018年8月17日~11月3日，以凡纳滨对虾(Litopenaeus vannamei)为研究对象，分析了对虾工厂化养殖水体中浮游动物群落结构特征、演替规律及其与养殖水体弧菌、浮游微藻和环境因素的关系。结果显示，从实验塘鉴定出21种浮游动物，隶属于4大类，种类最多的为原生动物，共13种，占总数的61.9%；其次为轮虫和桡足类，均为3种，占总数的14.3%；枝角类最少，占总数的5%。整个养殖期，浮游动物的平均密度约为0.71×103 ind./L，平均生物量约为11.72 mg/L。养殖过程中优势种由原生动物、轮虫、桡足类物种逐渐演变成单一的原生动物物种。实验塘浮游动物Shannon-Wiener多样性指数(H′)在0.52~1.64之间波动，前期先降低后升高，后期有所降低。相关性分析显示，浮游动物数量和浮游微藻数量显著负相关(P<0.05)，典范对应分析(Canonical correspondence analysis, CCA)显示，温度、pH、营养盐等是影响浮游动物优势种演替的重要因素。研究结果为深入认识凡纳滨对虾工厂化养殖中浮游动物的群落结构提供了基础数据。     

Comparison of bacterial communities in channel catfish Ictalurus punctatus culture ponds of an industrial ecological purification recirculating aquaculture system

The industrial aquaculture pond system has gradually replaced the use of traditional earthen pond, as it causes less pollution and is more economical. In this study, an industrial ecological purification recirculating aquaculture system consisting of the water source pond, high‐density culture ponds, a deposit pond, and ecological purification ponds for channel catfish cultivation was established. Twelve water samples from different ponds were sequenced, and the bacterial communities were analysed. The abundances of Cyanobacteria and Merismopedia varied in different functional ponds of the system. The water quality was stable after two months of cultivation at 1.89 ± 0.22 mg/L total nitrogen, 1.1 ± 0.08 mg/L NH₄‐N and 0.43 ± 0.1 mg/L total phosphorus. The fish weight increased in a nearly linear manner, reaching 237.63 ± 23.8 per fish at day 120. An analysis of the environmental parameters, water quality and fish weight suggested that the system had an effective water purification process. Canonical correspondence analysis showed that the community was affected at the genus and phylum levels by different environmental parameters. We identified several dominant beneficial bacteria with nutrient removal abilities. Overall, our results demonstrated that the ecological purification recirculating aquaculture system had notable effects on water quality improvement and promoted changes in bacterial populations. These results provide important information on the microbial ecology of pond industrial eco‐aquaculture systems.     

Shrimp (Litopenaeus vannamei) production and stable isotope dynamics in clear‐water recirculating aquaculture systems versus biofloc systems

Closed recirculating aquaculture systems (RAS) offer advantages over traditional culture methods including enhanced biosecurity, the possibility of indoor, inland culture of marine species year‐round and potential marketing opportunities for fresh, never‐frozen seafood. Questions still remain regarding what type of aquaculture system may be best suited for the closed‐system culture of marine shrimp. In this study, shrimp (Litopenaeus vannamei) were grown in clear‐water RAS and in biofloc‐based systems. Comparisons were made between the system types with respect to water quality, shrimp production and stable isotope dynamics used to determine the biofloc contribution to shrimp nutrition. Ammonia and nitrite concentrations were higher, and shrimp survival was lower in the biofloc systems. Although stable isotope levels indicated that biofloc material may have contributed 28% of the carbon and 59% of the nitrogen in shrimp tissues, this did not correspond with improved shrimp production. Overall, the water column microbial communities in biofloc systems may be more difficult to manage than clear‐water RAS which have external filters to control water quality. Biofloc does seem to offer some nutritional contributions, but exactly how to take advantage of that and ensure improved production remains unclear.     

凡纳滨对虾不同养殖密度高位池水体细菌群落动态

通过对养殖水体环境基因组DNA中细菌16S rRNA基因V4–V5区的高通量测序和生物信息学分析,研究了两种养殖密度的凡纳滨对虾(Litopenaeus vannamei)高位池水体中细菌群落在养殖过程中的动态。结果显示,养殖过程中各菌群相对丰度变化明显,细菌多样性随时间逐渐提高,优势菌群为变形菌门(Proteobacteria)、蓝藻门(Cyanobacteria)、拟杆菌门(Bacteroidetes)、放线菌门(Actinobacteria)和浮霉菌门(Planctomycetes)。随着养殖时间增长,蓝藻丰度所占比例逐渐减少,而变形菌、拟杆菌和浮霉菌丰度逐渐增大,同时养殖前期高密度池浮霉菌丰度显著高于低密度池(P0.01),而其他菌群无显著差异。结果表明,养殖期前50 d不同养殖密度水体细菌群落差异较大,而后30 d内细菌群落的时间异质性大于空间异质性,这意味着高位池水体菌相被划分为两类,到养殖后期菌相快速转变,养殖密度所带来的影响被减弱。