PAHs污染对植物根表成膜细菌群落结构的影响

一些根表细菌生物膜具有促进植物生长,提高植物抗逆性以及降解根际有机污染物等生态功能。明确多环芳烃(PAHs)污染条件下根表成膜细菌的群落结构,有助于从植物根表分离筛选出具有PAHs降解功能的成膜细菌,规避植物PAHs污染风险。从长期受PAHs污染的场地采集了距污染源不同距离的土壤和植物(车前草(Plantago depressa Willd)和狗尾巴草(Setaria viridis(L.)Beauv))样品,全面分析了供试样品中PAHs的含量,并利用PCR-DGGE(Polymerase Chain Reaction-Denaturing Gradient Gel Electrophoresis)技术探究了不同PAHs污染强度下根表成膜细菌的群落结构。结果表明,在土壤和植物样品中共检出7种PAHs,车前草和狗尾巴草体内PAHs的种类和浓度各不相同,但其总PAHs含量均远大于土壤中总PAHs的含量。PAHs污染条件下,车前草根表细菌的主要类群为变形杆菌门(Proteobacteria)、放线菌门(Actinobacteria)和厚壁菌门(Firmicutes),狗尾巴草根表的细菌类群主要为变形杆菌门(Proteobacteria),放线菌门(Actinobacteria)、厚壁菌门(Firmicutes)和拟杆菌门(Bacteroidetes)。车前草和狗尾巴草根表成膜细菌的群落结构具有一定的差异性,且其多样性随着PAHs污染强度的增加而逐渐降低,同时其种类及优势菌群也发生较大改变,但一些优势类群如变形杆菌门(Proteobacteria)在不同PAHs污染强度下皆存在且占有重要比例,推测这些类群中的细菌可以利用PAHs为碳源生长或是具备PAHs降解功能。     

有机污染物污染土壤环境的植物修复机理

利用活的生物体对有毒有机物污染土壤环境的修复是一种被人们认为安全可靠的方法。植物修复是生物修复研究的热点。植物修复的机理包括植物对有机污染物的直接吸收、植物根系分泌物、微生物对根际环境中有机污染物降解的促进作用。     

有机污染物根际胁迫及根际修复研究进展

根际环境及根际微生物是植物降解有毒有害有机污染物的基础。污染土壤植物修复的纵深研究产生了根际修复新技术。通过总结近20年来有机污染物胁迫的根际效应的研究,探讨了有机物污染士壤根际修复的可能性,为加强有机污染物在环境中的迁移、调控研究及土壤有机物污染的原位修复提供有利信息。     

南京栖霞重金属污染区植物富集重金属效应及其根际微生物特性分析

以南京栖霞重金属污染区5种植物及其根际土壤为研究对象,对植物富集重金属特征以及重金属含量与根际土壤细菌数量、土壤酶活性等的相关性进行了调查分析。结果发现,植物根际重金属污染物以Zn和Cd为主;重金属污染地区的植物有较强的吸收重金属能力,龙葵和茼草具备了超积累植物的基本特征;植物根际细菌和Pb抗性细菌的数量达到了107CFU g-1土;根际土壤酶活性未受到重金属的毒害或受到的毒害很小;植物体中重金属含量与土壤重金属含量及其存在状态、土壤酶、土壤重金属抗性细菌有显著的正相关性。根际土壤细菌尤其是具有重金属抗性的活性细菌可能会促进土壤重金属的活化,由此促进植物体对重金属的吸收和转运。     

持久性有机污染物的根际修复及其研究方法

根际是具有特殊性质的土壤微生态环境,对土壤中持久性有机污染物的行为及生物修复具有重要作用。本文从微生物降解、植物过程、非生物降解、土壤吸附、挥发、淋溶等方面归纳了有机污染物根际修复的研究进展,并从细胞培养、添加根系分泌物或根系残留物、挥发污染物收集和残留态污染物测定等方面综述了有机污染物根际行为的研究方法及其优缺点。     

棉花根际促生细菌的研究进展

综述了根际促生细菌(PGPR)的概念、研究手段、基因标记技术和荧光原位杂交技术在研究棉花根际促生细菌中的应用.植物根系可以分泌各种对微生物有益的物质,吸引微生物在根际的聚集.棉花凝集素对根际促生细菌菌株的胞外多糖具有凝集作用,在棉花根际促生细菌与棉花根部相互识别过程中具有重要作用,可以利用棉花凝集素作为筛选工具筛选对棉花具有促生作用的根际促生细菌菌株.基因标记技术证明棉花根际促生细菌能高密度地定殖在棉花根部,对棉花的生长起促进作用,并能抑制某些植物病原菌及根际有害微生物.分子生物学技术在微生物生态学领域的应用促进了棉花根际促生细菌的研究和应用,可以利用棉花根际促生细菌研发微生物肥料.     

植物修复多环芳烃污染土壤的根际效应机制研究进展

多环芳烃类有机污染物在土壤中可长期存在,进而通过食物链对人类健康产生重大潜在风险。对多环芳烃污染土壤进行植物修复是一种环境友好且经济有效的污染补救策略。进行植物根际效应机制研究对于开发可持续性多环芳烃污染土壤的植物修复技术具有重要指导意义。对近年来的相关研究工作进行了总结,结果表明:多种禾本科植物具有较强的多环芳烃污染耐受性和较好的修复效能,利用多植物混植的联合修复方式表现出优于单一植物的修复优势。低分子量有机酸类根系分泌物通过与土壤中多环芳烃污染物形成反馈回路决定植物修复体系中多环芳烃的命运。修复植物根系分泌物可塑造特定的根际微生物区系,根际微生物可通过多种机制来降解土壤环境中的多环芳烃。针对在植物修复多环芳烃污染土壤研究过程中尚存在一些问题,提出了未来植物修复根际效应机理研究中应该关注的重点和方向,旨在为优化多环芳烃污染土壤植物修复技术提供科学依据与理论参考。     

植物根系分泌物与根际微生物交互作用机制研究进展

根际是受植物根系影响最为强烈的微域环境,是植物和土壤交流的桥梁。根系能通过调控根系分泌物的种类和数量影响根际微生物的种群结构和多样性,根际微生物通过改变根际土壤特性影响根系的分泌作用,进而影响植物的生长发育过程。因此,很有必要对这些研究进展进行梳理,提出未来该领域的研究重点。本文以1999 ~ 2022年中国知网（CNKI）和Web of Science核心数据库为文献来源,对根系分泌物与根际微生物互作相关的64篇论文进行分析。总结了近年来根系分泌物和根际微生物互作的最新研究成果,重点介绍了根系分泌物对根际微生物种类、数量和分布的影响,环境胁迫对根系分泌物和根际微生物的影响,以及根际微生物对植物生长的影响。基于此,我们对该领域未来的研究方向进行了展望。深入理解根系分泌物和根际微生物之间复杂的互作关系及其机理,对揭示根际微生态调控过程、土壤微生物组功能、促进农作物增产等方面具有重要的意义。     

外源稀土作用下根–土界面元素转化、分布及其植物有效性的研究进展

外源稀土（RE）可导致根-土界面物理、化学及生物学特性发生根本性变化,特别是根系主导的根际动态过程的变化。如施用不同剂量RE条件下,稀土元素（REE）与根系的相互作用使根系生长、酶活性、细胞质膜透性等受到不同程度的影响。根系生长、酶活性的变化反映了植物可能通过根系形态学、生理学的适应性和非适应性变化机制来改变根系吸收养分、REE及重金属离子的能力,直接影响根际离子进入根系中的含量;而根系细胞质膜透性的变化则反映了植物可能通过根系分泌作用的适应性和非适应性变化机制来改变根系有机酸、质子等的分泌状况,使之作用于根际环境,制约养分、REE及重金属元素在根际的形态转化与迁移分布模式,从而间接影响根际离子进入根系中的含量。本文从外源RE对根系生长状况和酶活性的影响;对根系细胞质膜透性和分泌作用的影响;对根际养分、REE及重金属元素动态的影响;对根系养分、REE及重金属元素吸收分布的影响等4个方面的国内外文献出发,就土壤-植物系统中外源RE作用下根-土界面养分、REE及重金属元素的转化、分布及其植物有效性的响应变化与相关机制做出综述,同时提出目前研究中存在的问题,对今后的研究方向进行展望。     

褪黑素调控根系生长和根际互作的机制研究进展

【目的】根系生长和根际互作是影响植物对土壤养分吸收的关键因子。根系在土壤中穿插生长,不断改变其形态可塑性,进而改变根系构型,扩大与土壤的接触面积以获取所需养分。同时根系的生理可塑性协同根系形态可塑性显著影响根际互作效应,为植物经济高效获取养分资源提供可能。探究褪黑素等内源生长调节因子对根系形态和生理可塑性的调控机制,揭示通过最大化根际效应强化根际互作的有效途径,对集约化作物体系提高养分利用效率,促进绿色增产增效,具有重要的理论与实践意义。主要进展褪黑素作为新型植物生长调节信号分子,在盐害、干旱和低温等非生物胁迫中具有增强植物抗逆性、改善植物生长等重要调节作用。褪黑素显著改变根系生长,对植物主根生长主要表现为抑制作用,对侧根及不定根的发育和生长具有浓度依赖性调节,从而深刻影响植物根系构型。褪黑素调控根系生长的机制尚不清楚,总结已有进展表明:一方面褪黑素调节光周期,影响光合产物的运输和糖信号,从而调控地下部碳分配和根系生长;另一方面,褪黑素还能与生长素等植物激素互作,参与激素对植物生长调控的信号通路,从而对植物的生长发育和新陈代谢产生影响。这些进展对深入揭示褪黑素调控根系生长发育的机制提供了重要依据。问题与展望根系的生长发育以及根系构型的改变显著影响根际过程和根际互作,褪黑素作为调控因子在不同养分环境条件下显著影响根系的形态可塑性。然而,褪黑素在根际过程和根际互作中的作用机制并不清楚,有关研究亟待加强。深入探究褪黑素参与根际互作的机制,理解褪黑素调控根系生长和根际过程的作用途径,可为集约化农业体系下精准调控作物根系生长,强化根际互作,提高养分利用效率提供科学依据。     

Influence of grass species and soil type on rhizosphere microbial community structure in grassland soils

A number of studies have reported species specific selection of microbial communities in the rhizosphere by plants. It is hypothesised that plants influence microbial community structure in the rhizosphere through rhizodeposition. We examined to what extent the structure of bacterial and fungal communities in the rhizosphere of grasses is determined by the plant species and different soil types. Three grass species were planted in soil from one site, to identify plant-specific influences on rhizosphere microbial communities. To quantify the soil-specific effects on rhizosphere microbial community structure, we planted one grass species (Lolium perenne L.) into soils from three contrasting sites. Rhizosphere, non-rhizosphere (bulk) and control (non-planted) soil samples were collected at regular intervals, to examine the temporal changes in soil microbial communities. Rhizosphere soil samples were collected from both root bases and root tips, to investigate root associated spatial influences. Both fungal and bacterial communities were analysed by terminal restriction fragment length polymorphism (TRFLP). Both bacterial and fungal communities were influenced by the plant growth but there was no evidence for plant species selection of the soil microbial communities in the rhizosphere of the different grass species. For both fungal and bacterial communities, the major determinant of community structure in rhizospheres was soil type. This observation was confirmed by cloning and sequencing analysis of bacterial communities. In control soils, bacterial composition was dominated by Firmicutes and Actinobacteria but in the rhizosphere samples, the majority of bacteria belonged to Proteobacteria and Acidobacteria. Bacterial community compositions of rhizosphere soils from different plants were similar, indicating only a weak influence of plant species on rhizosphere microbial community structure.     

药用植物连作障碍研究评述和发展透视

连作障碍作为现代农业生产中较普遍的问题,在药用植物栽培生产中表现尤为严重,据统计约70%以块根类入药的药用植物在种植过程中都存在严重的连作障碍问题。连作障碍已经成为制约药用植物品质和发展的关键性因素。本研究从药用植物连作障碍问题研究现状出发,分析了当前药用植物连作障碍形成的三大共性问题,即根系分泌物诱导根际土壤酸化、根际微生物群落结构失衡和植株病毒病严重,具体体现在:根系分泌物诱导根际土壤微生物差异性演化、土传病原菌的化感互作、根际微生物区系的失衡加大土壤酸化、根际病原菌增多和有益菌减少导致的土存真菌病害加重、病毒病伴生和发展。并分析了土壤灭菌法、功能微生物调控、作物多样性栽培和生物质炭改良的根际调控策略在减缓药用植物连作障碍中的潜在作用。作者呼吁从事连作障碍研究的工作者应重视从根际生态学角度出发,以土壤食物网为切入点,应用现代系统生物学和化学生态学技术与方法,全面系统探究根系分泌物介导下植物-土壤-微生物的相互作用过程与机制,并着重关注土壤线虫和土壤病毒在连作障碍发生发展中的生态位关系,以深入阐明连作介导土壤酸化的生态学机制和病原菌响应根系分泌物的协同进化机理,在此基础上,采用多种根际调控相结合的策略减缓连作障碍问题,全面考虑经济、社会和生态效益,做到"生态预防为主、综合治理为要"。     

Grazing of a common species of soil protozoa (Acanthamoeba castellanii) affects rhizosphere bacterial community composition and root architecture of rice (Oryza sativa L.)

We performed a controlled experiment with rice seedlings (Oryza sativa L.) growing in Petri dishes on homogeneous nutrient agar containing a simple rhizosphere food web consisting of a diverse bacterial community and a common soil protozoa, Acanthamoeba castellanii, as bacterial grazer. Presence of amoebae increased bacterial activity and significantly changed the community composition and spatial distribution of bacteria in the rhizosphere. In particular, Betaproteobacteria did benefit from protozoan grazing. We hypothesize that the changes in bacterial community composition affected the root architecture of rice plants. These effects on root architecture affect a fundamental aspect of plant productivity. Root systems in presence of protozoa were characterized by high numbers of elongated (L-type) laterals, those laterals that are a prerequisite for the construction of branched root systems. This was in sharp contrast to root system development in absence of protozoa, where high numbers of lateral root primordia and short (S-type) laterals occurred which did not grow out of the rhizosphere region of the axile root. As a consequence of nutrient release from grazed bacteria and changes in root architecture, the nitrogen content of rice shoots increased by 45% in presence of protozoa. Our study illustrates that interactions over three trophic levels, i.e. between plants, bacteria and protozoa significantly modify root architecture and nutrient uptake by plants.     

Determination of the impact of continuous defoliation of Lolium perenne and Trifolium repens on bacterial and fungal community structure in rhizosphere soil

To determine the effects of defoliation on microbial community structure, rhizosphere soil samples were taken pre-, and post-defoliation from the root tip and mature root regions of Trifolium repens L. and Lolium perenne L. Microbial DNA isolated from samples was used to generate polymerase chain reaction–denaturing gradient gel electrophoresis molecular profiles of bacterial and fungal communities. Bacterial plate counts were also obtained. Neither plant species nor defoliation affected the bacterial and fungal community structures in both the root tip and mature root regions, but there were significant differences in the bacterial and fungal community profiles between the two root regions for each plant. Prior to defoliation, there was no difference between plants for bacterial plate counts of soils from the root tip regions; however, counts were greater in the mature root region of L. perenne than T. repens. Bacterial plate counts for T. repens were higher in the root tip than the mature root region. After defoliation, there was no effect of plant type, position along the root or defoliation status on bacterial plate counts, although there were significant increases in bacterial plate counts with time. The results indicate that a general effect existed during maturation in the root regions of each plant, which had a greater impact on microbial community structure than either plant type or the effect of defoliation. In addition there were no generic consequences with regard to microbial populations in the rhizosphere as a response to plant defoliation.     

污染区千金子和酢浆草根际土壤中PAHs结合态残留的梯度分布

采集某污染区千金子(Euphorbia lathyris L.)和酢浆草(Oxalis corniculata L.)的离根表0~3、3~6、6~9 mm的根际土壤,分析了多环芳烃(PAHs)结合态残留中母体化合物(Parent compound of bound residue,PCBR)在根际土壤中的含量及梯度分布规律。供试土壤类型为黄棕壤。结果表明,在非根际和根际土壤中均可检出10种PAHs的PCBR,非根际土壤中PCBR总含量为3.31 mg kg-1,高于根际土壤(1.07~1.82mg kg-1)。根际土壤中PAHs的PCBR含量随离根表距离(0~9 mm)的增加而增大。可用根际效应(R)来衡量根际土壤中PAHs的PCBR含量与非根际土壤相比减少的比例;R值随离根表距离(0~9 mm)的增加而变小。3个连续根际区中,PAHs总PCBR的R值为45.15%~67.66%,其中2环PAH的R值最大(61.18%~93.50%),4环和5环PAHs的R值最小(2.39%~6.31%),低环PAHs的PCBR在根际土壤中更易转化。PAHs的PCBR在千金子根际土壤中R值大于酢浆草,表明前者有更利于PAHs结合态残留转化的根际环境。PAHs结合态残留的根际梯度分布与根系分泌物的梯度分布关系密切,而PAHs种类、植物根际环境对PAHs结合态残留的分布影响显著。     

根系分泌物主要作用及解析技术进展

根系分泌物是植物保持根际微生态系统活力的关键因素，也是根际物质循环的重要组成部分，对根际土壤生态环境中的物质循环具有重要的驱动作用。根系分泌物可以刺激微生物生长，增强其活性，加速根际养分循环，增加土壤养分利用率，并在小规模空间引起温室气体通量的变化。此外，它也是植物参与竞争的重要策略，植物通过根分泌物以获取种间长期生存的养分，甚至分泌对自身有害的化感物质来排挤其他植物，实现自我生存，即使存在自毒作用或引起连作障碍等。植物的健康生长依赖于自身与土壤微生物复杂动态群落的相互作用，但是根际微生物群落结构和组成却又受植物物种、植物生长期、土壤性质、功能基因等因素影响，这些因素的动态变化可能导致根系分泌物的多样化，从而形成复杂多变的根系分泌物与植物的关系，进而影响植物的健康生长。目前，对植物根系分泌物的研究是土壤生态学、植物营养与代谢等领域的研究热点，且随着分析技术手段的快速发展，根系分泌物相关研究也逐渐深入，进一步揭示植物与微生物间的协同作用机理对农、林等行业生产具有重要的指导意义。     

Resistance of bacterial communities in the potato rhizosphere to disturbance and its application to agroecology

Soil bacteria have the ability to increase agricultural sustainability through the production of biopesticides and biofertilizers. Application of bacteria to field crops often results in sporadic colonization and unpredictable crop performance. This research sought to understand the colonization of the potato (Solanum tuberosum L.) rhizosphere using reciprocal transplants. Plants were grown in a forest or an agricultural soil and then transplanted into either the same soil or the opposite soil. Bacterial communities were profiled using terminal restriction fragment length polymorphism (TRFLP) and analyzed using pairwise comparisons. The results revealed that the bacterial community that colonized the rhizosphere in the first soil remained mostly intact for 30 days after the plants were transplanted into another soil in which the soil bacteria community differed from that found in the original soil. The concept that it may be possible to establish a functional microbiota and to deliver it to an agricultural environment was tested. A nitrogen-fixing bacterial community was established on plants grown under tissue culture conditions and the plants were transplanted into a field soil. Plants inoculated with eight separate nitrogen-fixing communities showed an average fivefold increase in dry biomass when compared to mock-inoculated plants and the microbial profiles remained distinct at 30 days after transplantation. These results demonstrate that the plant rhizosphere is a resistant community and that the first bacterial community that becomes established on the root remains with the plant even when the plant is placed into soil with a vastly different microbiota.     

Mobilization and turnover of soil phosphorus in the rhizosphere

Recent progress in methods enables a better understanding of the turnover of P in the rhizosphere. Examples of this progress are the separation of soil layers differing in proximity to the roots, improved methods for extraction and fractionation of soil P, application of ³²P isotope dilution analysis to follow P fluxes between various fractions and direct determination of microbially bound P and of root phosphatases.

• These methods were combined to investigate the following aspects
• –labile P pools, the P fluxes between these pools and their contribution to the P supply to growing maize roots
• –the role of microbial biomass in these interactions and the partition of mobilized P between plants and microorganisms
• –modifications of sorption and transport of P in the rhizosphere
• –plant availability of native and added organic phosphates, and the relative significance of root and soil phosphatases.

There is a significant transformation of P in the rhizosphere with a corresponding redistribution among fractions of different plant availability. About 9% of the inorganic ³²P added to soil were incorporated within 2 weeks into microbial and organic fractions. The transfer of P from non-exchangeable forms exceeded the depletion of the exchangeable P by a factor of 5. About 53% of the mobilized P originated from inorganic, the remaining 47% from organic fractions. Of the mobilized P 80% was taken up by the plants and 20% was found in the microbial biomass. Up to 90% of the P in the rhizosphere soil solution was organic with a maximum just outside the root zone. Soluble inositol hexaphosphate modified the sorption of inorganic P, thus shifting its equilibrium solution concentration. The phosphatase activity of the roots is considerable. Both root phosphatase activity and the utilization of inositol hexaphosphate depend on the P supply and nutritional status of plants with regard to P. It is concluded that the rhizosphere is a key site of P transformation with a significant mobilization of P from the non-exchangeable inorganic and organic fractions. Organic P fractions not only play a significant role as a P source but also modify important soil parameters related to the sorption and transport of P in the rhizosphere.     

Corn (Zea mays L.) root exudates and their impact on 14C-pyrene mineralization

Corn (Zea mays L.) root exudates were flushed from a hydrophobic system that allowed the aseptic separation of soluble exudates from the intact plant root. Plants were grown for 90 d, during which time root exudates flowed from the hydroponic setup directly onto columns containing soil previously contaminated with polycyclic aromatic hydrocarbons (PAHs). Mineralization of the PAH, pyrene, was then determined in soil removed from columns. In addition, exudated samples were directly taken from the hydroponic system for estimation of total organic carbon release and for use in microbial studies. In soil from columns that received root exudates from a planted (versus an unplanted) apparatus, there was a significant increase in ¹⁴C-pyrene mineralization. The extent of stimulation was comparable to that measured in rhizosphere soil isolated from plants growing in the same soil. Soil from columns that received solution from apparatuses that were not planted showed no stimulation of ¹⁴C-pyrene mineralization. Separate studies confirmed that some members of the soil microbial community were able to utilize these soluble plant compounds. This indicates that root exudates have the potential to increase the degradation of xenobiotics by the growth of soil microorganisms. Separating the chemical impact of the root exudates from any root surface phenomena is an important step in isolating a potential mechanism of phytoremediation. Many studies have speculated on the involvement of root exudates in rhizosphere degradation of organic contaminants, but very few studies go beyond adding simple carbon substrates in short pulses. This study employed a system that exposed the microbial community to real root exudates in the concentrations and over a time period that mimicked actual conditions.