Correction to: Individual based modelling of fish migration in a 2-D river system: model description and case study

Landscape Ecology - In the original publication of the article, the third author name has been misspelt. The correct name is given in this Correction. The original version of this article was revised.     

Habitat use of a coastal delphinid population investigated using passive acoustic monitoring

1. The population of bottlenose dolphins in eastern Scotland has undergone significant range expansion since the 1990s, when a Special Area of Conservation was established for the population.
2. Distribution of this population is well described within areas of its range where intensive work has been carried out, such as the inner Moray Firth, St Andrews Bay and the Tay estuary area. However, elsewhere in their range, habitat use is less well understood.
3. In this study, a large‐scale and long‐term passive acoustic array was used to gain a better understanding of bottlenose dolphin habitat use in eastern Scottish waters, complementing and augmenting existing visual surveys.
4. Data from the array were analysed using a three‐stage approach. First, acoustic occupancy results were reported; second, temporal trends were modelled; and third, a spatial–temporal‐habitat model of acoustic occupancy was created.
5. Results from the acoustic occupancy are in agreement with visual studies that found that areas near known foraging locations were consistently occupied. Results from the temporal trend analysis were inconclusive. Habitat modelling showed that, throughout their range, bottlenose dolphins are most likely to be detected closer to shore, and at a constant distance from shore, in deeper water.

     

European bat lyssaviruses: Distribution, prevalence and implications for conservation

Worldwide, there are more than 1100 species of the Order Chiroptera, 45 of which are present in Europe, and 16 in the UK. Bats are reservoirs of, or can be infected by, several viral diseases, including rabies virus strains (in the Lyssavirus genus). Within this genus are bat variants that have been recorded in Europe; European bat lyssavirus 1 (EBLV-1), European bat lyssavirus 2 (EBLV-2) and, four currently unclassified isolates. Since 1977, 783 cases of EBLVs (by isolation of viral RNA) have been recorded in Europe. EBLV-1 or EBLV-2 has been identified in 12 bat species, with over 95% of EBLV-1 infections identified in Eptesicus serotinus. EBLV-2 is associated with Myotis species (Myotis daubentonii and Myotis dasycneme). A programme of passive surveillance in the United Kingdom between 1987 and 2004 tested 4871 bats for lyssaviruses. Of these, four M. daubentonii (3.57% of submitted M. daubentonii) were positive for EBLV-2. Potential bias in the passive surveillance includes possible over-representation of synanthropic species and regional biases caused by varying bat submission numbers from different parts of the UK. In 2003, active surveillance in the UK began, and has detected an antibody prevalence level of 1-5% of EBLV-2 in M. daubentonii (n = 350), and one bat with antibodies to EBLV-1 in E. serotinus (n = 52). No cases of live lyssavirus infection or lyssavirus viral RNA have been detected through active surveillance. Further research and monitoring regarding prevalence, transmission, pathogenesis and immunity is required to ensure that integrated bat conservation continues throughout Europe, whilst enabling informed policy decision regarding both human and wildlife health issues.     

Extraction of soil nitrogen by chloroform fumigation – A new index for the evaluation of soil nitrogen supply

The N extracted after chloroform (CHCl₃) fumigation was determined as a possible index of soil N supply to plants. The relationships between extractable N following fumigation and reference indices such as total N, alkali-hydrolyzable N, N released by the Stanford short-term incubation method, and the N extracted by KCl and by CaCl₂, were measured in nine soils of differing soil N supply capacity. A highly significant correlation was achieved between the extractable N released by fumigation and the N released by the Stanford method, i.e. a short-term aerobic incubation (r = 0.87). Similarly, the correlation between extractable N by fumigation and the N uptake by ryegrass was highly statistically significant (r = 0.93). Using the N extracted following fumigation has the advantage that laboratory results are available in two days and are both reproducible and of high precision. Therefore, the N extracted following fumigation is a valid, timesaving and precise index of soil N supply capacity.     

Effects of repeated use of an area of heather Calluna vulgaris (L.) hull moor at Kindrogan,Scotland, for teaching purposes

A triangular plot of heather moor at Kindrogan was used for teaching botanical analysis for eight years, using the same set of random coordinates to locate sample points. Because of the method of point location, there was a gradient of trampling pressure across the plot, and there were also parts of the plot that were never analysed. At the end of the eight-year period heather cover and mean height were found to have declined with increasing levels of trampling. Mean numbers of species/m² did not however decline, and were actually minimal on untrampled ground. With moderate levels of trampling, quadrats that had been analysed for eight years contained more heather litter than those that had not been analysed before. No decline in species frequencies was found in previously analysed quadrats. The value of the plot for teaching purposes does not seem to have declined, and may have actually increased over the period of use.     

Mapping sources,sinks, and connectivity using a simulation model of northern spotted owls

Source-sink dynamics are an emergent property of complex species–landscape interactions. A better understanding of how human activities affect source-sink dynamics has the potential to inform and improve the management of species of conservation concern. Here we use a study of the northern spotted owl (Strix occidentalis caurina) to introduce new methods for quantifying source-sink dynamics that simultaneously describe the population-wide consequences of changes to landscape connectivity. Our spotted owl model is mechanistic, spatially-explicit, individual-based, and incorporates competition with barred owls (Strix varia). Our observations of spotted owl source-sink dynamics could not have been inferred solely from habitat quality, and were sensitive to landscape connectivity and the spatial sampling schemes employed by the model. We conclude that a clear understanding of source-sink dynamics can best be obtained from sampling simultaneously at multiple spatial scales. Our methodology is general, can be readily adapted to other systems, and will work with population models ranging from simple and low-parameter to complex and data-intensive.     

Effects of nitrogen fertilizer on the acidification of two typical acid soils in South China

Purpose

A laboratory incubation under constant temperature and humidity was conducted to estimate the impacts of nitrogen (N) fertilizers on the acidification of two acid soils (Plinthudult and Paleudalfs) in south China.

Materials and methods

The experiment had three treatments, i.e., control (CK), addition of urea (U), and addition of ammonium sulfate (AS). We measured soil pH, nitrate (NO₃ ^?), ammonium (NH₄ ⁺), exchangeable hydrogen ion (H⁺), and aluminum ion (Al³⁺) concentrations at various intervals during the 90 days of incubation. Soil buffering capacity (pHBC) was also measured at the end of the experiment.

Results and discussion

The application of N fertilizers resulted in soil acidification. The U treatment caused greater acidification of the Plinthudult soil than the AS treatment, while there were no differences between U and AS treatments on the acidification of the Paleudalfs. At the end of the trial, the pHBC of Plinthudult in AS treatment was greater than that in CK and U treatments, which may be due to the buffering system of NH₄ ⁺ and NH₄OH. However, the pHBC of Paleudalfs was unchanged between treatments. The dynamics of exchangeable H⁺ and Al³⁺ corresponded to that of soil pH. Correlation analysis showed that both soil exchangeable H⁺ and soil exchangeable Al³⁺ were significantly related to soil pH.

Conclusions

Application of urea and ammonium sulfate caused acidification in both soils and increased soil exchangeable Al³⁺ and H⁺ concentrations in the Paleudalfs. The application of urea increased exchangeable Al³⁺, and ammonium sulfate increased pHBC in the Plinthudult.     

Exploring animal rabies endemicity to inform control programmes in Punjab,India

Previous studies estimate that one‐third of the annual global burden of rabies (~20,000 cases) occurs in India. Elimination of canine rabies is essential to reduce this burden. Surveillance of animal cases can assess both the risk to humans and the efficacy of control strategies. The objective of this study was to describe the spatial and temporal occurrence of reported confirmed cases of rabies in animals in Punjab, India, from 2004 to 2014. We analysed passive surveillance data on 556 samples submitted from 2004 to 2014 to GADVASU, Ludhiana, Punjab, India. Regression and time series analyses were conducted to understand seasonal and long‐term variation of cases and identify cross‐correlation of monthly cases between species. Spatio‐temporal analyses assessed spatial autocorrelation of date of reporting, mean geographic centres of disease occurrence and clustering of cases using Kulldorff's space‐time permutation statistic. The annual number of submissions and proportion of confirmed cases were consistent throughout 2004–2014. Most submissions (320; 57.6%) were confirmed rabies cases, including dogs (40.6%), buffalo (29.7%) and cattle (23.1%). Regression analysis of monthly cases in dogs showed seasonal variation with significant increases in cases in March and August. Monthly case numbers in buffalo decreased over time. Long‐term temporal trend was not detected in dog and cattle cases. Time‐series models identified significant cross‐correlation between dog and buffalo cases, suggesting that buffalo cases were spillover events from dogs. Significant spatio‐temporal variation or clusters of cases were not detected. These results indicate that rabies cases in animals—and therefore, the potential for exposure to humans—were temporally and spatially stable during 2004–2014 in Punjab, India. The endemic nature of rabies transmission in this region demands a coordinated, sustained control programme. This study provides baseline information for assessing the efficacy of rabies control measures and developing seasonally targeted dog vaccination and rabies awareness strategies.