Realizing the potential of trait‐based approaches to advance fisheries science

Analysing how fish populations and their ecological communities respond to perturbations such as fishing and environmental variation is crucial to fisheries science. Researchers often predict fish population dynamics using species‐level life‐history parameters that are treated as fixed over time, while ignoring the impact of intraspecific variation on ecosystem dynamics. However, there is increasing recognition of the need to include processes operating at ecosystem levels (changes in drivers of productivity) while also accounting for variation over space, time and among individuals. To address similar challenges, community ecologists studying plants, insects and other taxa increasingly measure phenotypic characteristics of individual animals that affect fitness or ecological function (termed “functional traits”). Here, we review the history of trait‐based methods in fish and other taxa, and argue that fisheries science could see benefits by integrating trait‐based approaches within existing fisheries analyses. We argue that measuring and modelling functional traits can improve estimates of population and community dynamics, and rapidly detect responses to fishing and environmental drivers. We support this claim using three concrete examples: how trait‐based approaches could account for time‐varying parameters in population models; improve fisheries management and harvest control rules; and inform size‐based models of marine communities. We then present a step‐by‐step primer for how trait‐based methods could be adapted to complement existing models and analyses in fisheries science. Finally, we call for the creation and expansion of publicly available trait databases to facilitate adapting trait‐based methods in fisheries science, to complement existing public databases of life‐history parameters for marine organisms.     

Correction to: Individual based modelling of fish migration in a 2-D river system: model description and case study

Landscape Ecology - In the original publication of the article, the third author name has been misspelt. The correct name is given in this Correction. The original version of this article was revised.     

In-field calibration of a dielectric soil moisture meter designed for use in an access tube

Abstract. The in-field calibration of a dielectric probe to measure soil water content is described. The probe uses an access tube analogous to that of the neutron probe. The dielectric constant was measured at soil depths of 10, 20, 30, 40, 60 and 100 cm. Cores of soil were then taken from the face of pits dug 30 cm from the access tube and their soil water contents determined by oven drying. The dielectric constant values measured by the probe were calibrated against water contents from these cores. We found that sensor depth needed to be included to achieve a good calibration model that explained 72% of the variance. It is argued that depth needs to be included because of artefacts introduced during the installation of the access tube.     

Giants' shoulders 15 years later: lessons,challenges and guidelines in fisheries meta‐analysis

Meta‐analysis has been an integral tool for fisheries researchers since the late 1990s. However, there remain few guidelines for the design, implementation or interpretation of meta‐analyses in the field of fisheries. Here, we provide the necessary background for readers, authors and reviewers, including a brief history of the use of meta‐analysis in fisheries, an overview of common model types and distinctions, and examples of different goals that can be achieved using meta‐analysis. We outline the primary challenges in implementing meta‐analyses, including difficulties in discriminating between alternative hypotheses that can explain the data with equal plausibility, the importance of validating results using multiple lines of evidence, the trade‐off between complexity and sample size and problems associated with the use of model output. For each of these challenges, we also provide suggestions, such as the use of propensity scores for dealing with selection bias and the use of covariates to control for confounding effects. These challenges are then illustrated with examples from diverse subfields of fisheries, including (i) the analysis of the stock–recruit relationship, (ii) fisheries management, rebuilding and population viability, (iii) habitat‐specific vital rates, (iv) life‐history theory and (v) the evaluation of marine reserves. We conclude with our reasons for believing that meta‐analysis will continue to grow in importance for these and many other research goals in fisheries science and argue that standards of practice are therefore essential.     

Multiple ventricular bands and the associated trabecula septomarginalis dextra in the right ventricle of the domestic dog (Canis familiaris)

Ventricular bands are strand‐like intraventricular structures extending between adjacent papillary muscles; a papillary muscle and the ventricular wall or the interventricular septum and ventricular wall. Examination of the domestic dog right ventricle documented six ventricular band types. Eighty‐five of the 89 examined hearts had at least one right ventricular band. In the current study, the right ventricle of the 85 dog hearts was re‐examined for more than one ventricular band type. Seven patterns of multiple different bands were identified in the 24 dog hearts. The patterns (i.e., combinations) of different ventricular bands were grouped into three categories. Category 1 had five different patterns of bands. Each pattern had two different band types. Category 2 had one combination of three different bands. Category 3 had one combination of four different bands. The presence of right ventricular bands around the trabecula septomarginalis dextra was also documented. All 24 dog hearts with multiple ventricular bands had a trabecula septomarginalis dextra. The main goal of this study was documentation of multiple right ventricular band patterns. A secondary goal was documentation of the combined presence of these bands and a trabecula septomarginalis dextra. In the dog, the ventricular bands and trabecula are both thin, strand‐like intraventricular structures with variable branching patterns before blending into the ventricular wall. The gross similarity of these structures and lack of information on their combined presence could precipitate their misidentification.     

Effect of oral administration of low doses of pentobarbital on the induction of cytochrome P450 isoforms and cytochrome P450-mediated reactions in immature Beagles

OBJECTIVE: To determine the effect of oral administration of low doses of pentobarbital on cytochrome P450 (CYP) isoforms and CYP-mediated reactions in immature Beagles. ANIMALS: 42 immature (12-week-old) Beagles. PROCEDURE: Dogs were grouped and treated orally as follows for 8 weeks: low-dose pentobarbital (50 microg/d; 4 males, 4 females), mid-dose pentobarbital (150 microg/d; 4 males, 4 females), high-dose pentobarbital (500 microg/d; 4 males, 4 females), positive-pentobarbital control (10 mg/kg/d; 2 males, 2 females), positive-phenobarbital control (10 mg/kg/d; 2 males, 2 females), and negative control (saline 10.9% NaCl] solution; 5 males, 5 females). Serum biochemical and hematologic values were monitored. On necropsy examination, organ weights were determined, and histologic evaluation of tissue sections of liver, kidney, small intestine, testes, epididymis, and ovaries was performed. Hepatic and intestinal drug-metabolizing enzyme activities were measured, and relative amounts of CYP isoforms were determined by western blot analysis. RESULTS: The amount of a hepatic CYP2A-related isoform in dogs from the high-dose pentobarbital treatment group was twice that of dogs from the negative control group. CYP2C was not detectable in small intestinal mucosa of dogs from the negative control group; measurable amounts of CYP2C were found in dogs from the various (low-, mid-, and high-dose) pentobarbital treatment groups and from positive-pentobarbital and positive phenobarbital control groups. Several CYP-mediated reactions increased in a dose-dependent manner. The lowest calculated effective dose of pentobarbital ranged from 200 to 450 microg/d. CONCLUSIONS AND CLINICAL RELEVANCE: Several CYP isoforms and their associated reactions were induced in dogs by oral administration of low amounts of pentobarbital.     

Low-oxygen treatment for inhibition of decay and ripening in organic bananas

Summary

Application of a low-O₂ atmosphere for several days prior to storing organic banana clusters was effective in preventing decay development on the crown cuts, and in delaying ripening. Preclimacteric banana clusters (Musa spp. AAA group cultivar Ziv) were treated with a low-oxygen atmosphere (2%) at 208C for 24, 48 and 72.h immediately after harvest. After removal from low-O₂ stress, the bananas were stored at 128C for 21.d, and were then treated with ethylene at 188C for 24.h and transferred to shelf life at 208C for an additional 4.d. The low-O₂ treatments were compared with the commercial treatment of dipping the crown cuts in 0.2% thiabendazole (TBZ). The low-O₂ stress for 48 or 72.h was effective in preventing decay after shelf life, but less so than the TBZ treatment. Low-O₂ for 24.h was not effective enough, and the 72.h treatment markedly impaired colour development after ripening with ethylene. The 48.h low-O₂ treatment which resulted in the best decay prevention also retarded ripening processes (colour, ®rmness, respiration and ethylene production) and reduced chilling injury symptoms, without impairing the taste. The level of reducing sugars in the 48.h-treated fruit was similar to that in the control fruit after ripening and shelf life. The endogenous levels of acetaldehyde (AA) and ethanol produced by the treated fruit were lower than those in the control fruit during shelf life. It seems that there is a high potential for this physical treatment of low-O₂ stress to replace chemical treatments, as means of maintaining the quality of organic bananas.     

Do postlarval amphidromous fishes transport marine‐derived nutrients and pollutants to Caribbean streams?

Diadromous fishes are known biotransport vectors that can move nutrients, energy and contaminants in an upstream direction in lotic ecosystems. This function has been demonstrated repeatedly in anadromous salmonids, but the role of other diadromous species, especially tropical taxa, as biotransport vectors is less studied. Amphidromous fish species exhibit potential to act as upstream vectors of nutrients and contaminants in their postlarval and juvenile stages, but this role is largely unknown because of limited understanding of larval growth habitats. Moreover, because some species are harvested in artisanal fisheries as postlarvae, and postlarvae are consumed by riverine and estuarine predators, heavy contaminant loads may present a human or wildlife health concern. This research incorporates stable isotope and contaminant analyses to infer larval habitats and contaminant accumulation of amphidromous fishes on the Caribbean island of Puerto Rico. The isotopic signatures of postlarval amphidromous fishes indicated marine basal sources and food web components, rather than those from riverine habitats. Additionally, postlarvae did not contain concentrations of anthropogenic pollutants that would be of ecological or human health concern. These findings are the first and strongest evidence that amphidromous fish postlarvae function as biotransport vectors of marine nutrients into and up river ecosystems without posing a health threat to the receiving food web or human consumers.