Recent advances in molecular marker techniques: Insight into QTL mapping,GWAS and genomic selection in plants

Recent advances in sequencing technology have brought several novel platforms for marker development and subsequent genotyping. The high-throughput and cost effective marker techniques have changed the entire scenario of marker applications. The huge genotypic data obtained with next generation sequencing (NGS) also demands analytical tools, statistical advances, and comprehensive understanding to cope with breeding applications. In the present review, we discussed different available marker techniques, their strengths, and limitations. Emphasis was given on software tools, analytical pipelines, workbenches, and online resources available for marker development. Comparison of SNP genotyping involving complexity reduction techniques like GBS, RRL, RAD, and array-based platforms were presented in a view to describe suitability for specific purposes. We found that genotyping by whole genome re-sequencing has great potential, and could be a routine application in the near future with continuously decreasing cost of sequencing. Microsatellites, still a valuable option for breeders, have also advanced with NGS. Here a catalogue of tools for microsatellite evaluation in short sequence reads was provided. The most common applications of molecular marker like QTL mapping, genome-wide association mapping (GWAS), and genomic selection were highlighted. The present review will be helpful for the effective utilization of available resources and for the planning of crop improvement programs employing molecular marker techniques.     

Efficiency of seed bio-priming technique for healthy mungbean productivity under terminal drought stress

Recently, drought-induced damaging impact in reducing the crop growth and development is drastically ranked at the top under various abiotic stresses. And especially water stress at the reproductive growth stages termed as terminal drought has become a severe threat for mungbean productivity. To mitigate the drought stress condition, "bio-priming" has emerged as a newly agronomic and sustainable technique in improving the mungbean production. A 2-year field study during Kharif season 2017–2018 was conducted to investigate the efficacy of rhizobacteria seed priming in mungbean(AZRI mung-06), at Agronomic Research Area, Department of Agronomy, Bahauddin Zakariya University, Multan, Pakistan. The experiment comprised two factors containing F_A(seed treatments, control(dry seeds), hydro-priming, silicon(Si)-priming, and bio-priming(mixture strains of Pseudomonas fluorescens+Rhizobium phaseoli)) and F_B(irrigation water-regimes at various growth stages including leaf formation(L), stem elongation(S)+flowering(F)+pod formation(P) containing treatments are normal irrigation(I_(L+S+F+P)) and terminal drought stress(I_(F+P))). All the treatments were arranged in randomized complete block design under factorial design and were replicated thrice. Results indicated that the exposure of drought stress at flowering and pod formation stages hampered the morpho-physiological growth and yield of mungbean. Nevertheless, seed priming treatments particularly bio-priming were effective in alleviating the detrimental effects of drought stress. Bio-priming significantly increased the yield and yield components(seeds/plant, 1 000-grain weight and harvest index) of mungbean and regulated the activities/levels of antioxidants(superoxide dismutase, catalase, peroxidase, ascorbic acid, and total phenolics) under drought stress. Compared with the control, bio-priming increased the seed yield of mungbean by 8–12% under normal as well as drought stress conditions during both years of study. Bio-priming also improved the nutrient uptake behavior followed by Si-and hydro-priming treatments under terminal drought stress. The study emphasized the effectiveness of bio-priming as dual seed treatment method may be helpful for vigorous germination of mungbean production along with plant tolerance against terminal drought stress. Among the various treatments, plants treated with bio-priming technique compensated the grain yield due to having strong antioxidant defense system and better nutrient uptake behaviour under terminal drought stress. Economic analysis also concluded that bio-priming is the easiest, cost-effective, friendly, and sustainable approach for the maximization of the mungbean production.     

Comparative field performance of some agricultural crops under a canopy of Populus deltoides and Ulmus wallichiana

The performance of maize, beans and sunflower was evalu-ated under a canopy of Populus deltoides and Ulmus wallichiana at Fac-ulty of Agriculture, Wadura. The germination, growth and yield of the three...     

Field evaluation of some bait additives against Indian crested porcupine (Hystrix indica) (Rodentia: Hystricidae)

This research study evaluated the effect of different additives on the bait consumption by Indian crested porcupine, a serious forest and agricultural pest, under field conditions. Different additives (saccharin, common salt, bone meal, fish meal, peanut butter, egg yolk, egg shell powder, yeast powder, mineral oil and coconut oil) at 2 and 5% each were tested for their relative preference, using groundnut–maize (1:1) as basic bait. All the additives were tested under a no‐choice test pattern. For control tests, no additive was mixed with the basic bait. Saccharin at 5% concentration significantly enhanced the consumption of bait over the basic bait, while 2% saccharin supplemented bait resulted in a non‐significant bait consumption. All other additives did not enhance the consumption of the bait material; rather, these worked as repellents. However, the repellency was lowest with the common salt, followed by egg yolk, egg shell powder, bone meal, peanut butter, mineral oil, fish meal and yeast powder, while coconut remained the most repellent compound. The present study suggested that groundnut–maize (1:1) supplemented with 5% saccharin was the preferred bait combination, and can be used with different rodenticides for the management of Indian crested porcupine.     

小麦分泌的有机酸影响钙质土中锌的释放

Rhizosphere drives plant uptake of sparingly soluble soil zinc(Zn).An investigation with three experiments was conducted to study organic acid exudation by two contrasting wheat genotypes(Sehar-06 and Vatan),Zn fractions in 10 different calcareous soils from Punjab,Pakistan,and release of different soil Zn fractions by organic acids.The two genotypes differed significantly in biomass production and Zn accumulation under deficient and optimum Zn levels in nutrient solution.At a deficient Zn level,Sehar-06 released more maleic acid in the rhizosphere than Vatan.Ten soils used in the present study had very different physicochemical properties;their total Zn and Zn distribution among different fractions varied significantly.Zinc release behaviour was determined by extracting the soils with 0.005 mol L-1 citric acid or maleic acid.The parabolic diffusion model best described Zn release as a function of time.Parabolic diffusion model fitting indicated more maleic acid-driven than citric acid-driven soil Zn mobility from different fractions.Cumulative Zn release in six consecutive extractions during 24 h ranged from 1.85 to 13.58 mg kg-1 using maleic acid and from 0.37 to 11.84 mg kg-1 using citric acid.In the selected calcareous soils,the results of stepwise linear regression indicated significant release of Fe-Mn oxide-bounded soil Zn by maleic acid and its availability to the Zn-effcient genotype.Hence,release of maleic acid by plants roots played an important role in phytoavailability of Zn from calcareous soils.     

Nitrogen Mineralization as Influenced by Different Organic Manures in an Inceptisol in the Foothill Himalayas

Nitrogen-use efficiency can be enhanced through an understanding of the nitrogen (N) mineralization behavior of organic sources. An incubation study was conducted to assess the impact of organic manures on N mineralization. The manures, farmyard manure (FYM), Leucaena leucocephala, and poultry manure, were applied to the soil alone or along with urea. There was a rapid increase in the amount of mineral N released with a peak appearing either at 14 days (+urea treatments) or 21 days (manure only) of aerobic incubation. Thereafter the net N mineralized decreased gradually and levelled off beyond day 56. Overall the cumulative net N mineralized after 98 days of incubation was in the order urea > Leucaena + urea > poultry manure + urea _> FYM + urea > Leucaena > poultry manure > FYM > zero N. The potentially mineralizable N (N₀) was lower in treatments where urea was not applied.     

Rejuvenating soybean(Glycine max L.) growth and development through slight shading stress

The impact of increased shading stress on agronomic traits, photosynthetic performance and antioxidants activities in leaves of two soybeans cultivars(D16 and E93) was studied. Soybean seedlings were grown in pots and exposed to no shade(S0), slight shade(S1), moderate shade(S2), and heavy shade(S3). Our findings showed that under the S3 in both cultivars, leaf fresh weight(LFW), specific leaf area(SLA) and leaf thickness decreased significantly, accompanied by a reduction in photochemical parameters including the maximum quantum yield(F_v/F_m) and electron transport rate(ETR). Furthermore, compared to S0, S1 significantly increased the ETR, sucrose content and the activity of catalase(CAT) in both D16 and E93 cultivars while S2 and S3 decreased the activity. However, under all treatments of shading stress, the antioxidant activities of superoxide dismutase(SOD) and peroxidase(POD) were lowered in both cultivars. Such morphological and physiological plasticity to adapt S1 compensates for the decrease in biomass and leads to seed weight compared to that obtained with an amount of normal light. Through configuring the space in the intercropping systems, S1 could be helpful for optimum growth and yield. Redesigning photosynthesis through S1 for the intercropping systems could be a smart approach.     

Comparison of sustainable forest management (SFM) trends at global and country levels: case study in Iran

Sustainable Forest Management (SFM) is an integral component of sustainable development. Iran is a Near East country with low forest cover. Iran uses 7 criteria and 65 indicators for regional and national monitoring of forest management. We evaluated the status of SFM in Iran, and a location imaging in its path towards SFM was provided by existing validation data and library references for the Criteria and Indicators (C&I) adopted in the Near East, We identify challenges and opportunities associated with SFM in Iran. Although the information to evaluate the trend of SFM in Iran was incomplete, we compiled some information on the basis of C&I. Comparison of some indicators with the values for the rest of the world revealed that the situation in Iran is very different. Although some indicators revealed a better situation in Iran, Iran lags the rest of the world in the implementation of SFM. Iran, like many countries, is trying hard to find ways to sustainably use its forests. Not all C&I for assessment of SFM in Iran have been determined or defined. However, a consistent and comprehensive framework of criteria and indicators to monitor progress towards SFM is being applied. Defining some C&I is still at an early stage.