The use of infrared spectroscopy and machine learning tools for detection of Meloidogyne infestations

Plant parasitic nematodes are generally soilborne pathogens that attack plants and cause economic losses in many crops. The infested plants show nonspecific symptoms or, often, are symptomless; therefore, diagnosis is performed by taking soil and root tissue samples. Here, we show that a combination of different infrared spectra analysis and machine learning algorithms can be used to detect plant parasitic nematode infestations before symptoms become visible, using leaves instead of roots and soil as samples. We found that tomato and guava plants infested with Meloidogyne enterorlobii produced different spectral patterns compared to uninfested plants. Using partial spectra from 1,450 to 900/cm as the "fingerprint region", principal component analyses indicated that after 5 (tomatoes) or 8 weeks (guava), plants with no visible symptoms of infestations were positively diagnosed. To improve the early detection response, we used machine learning modelling. A support vector machine (SVM) was used to obtain more robust, accurate models. The SVM model contained 34 support vectors, 17 for each level. The overall performance of the model was >97% and the total accuracy was significantly higher, demonstrating the absence of chance prediction. The best prediction of infestation was obtained at the second and fourth weeks for tomatoes and guavas, respectively, reducing the diagnostic time by half. The combined application of these techniques reduces the processing time from field to laboratory and shows enormous advantages by avoiding root and soil sampling.     

Breeding Differently: Participatory Selection and Scaling Up Innovations in Colombia

Global challenges like sustainable development, climate change, malnutrition and gender inequality can be tackled from an agricultural perspective. Micronutrient deficiency is a major problem for the health and food security of the population. In Colombia, iron deficiencies affect 32% of the children under the age of five; and 43% of the Colombian population have zinc and vitamin A deficiencies. We designed and implemented a research-for-development programme that links agriculture and nutrition through a two-stage project. In the first stage, we selected three new yellow potato cultivars with better nutritional contents, higher yield and better resistance to late blight than the traditional yellow cultivars. We characterized the Colombian germplasm, Solanum tuberosum Group Phureja, for its nutritional attributes. During this stage, studies of the social and nutritional status of the communities were also conducted. In the second stage, we focused on scaling up new potato cultivars to reach potato producers and consumers by promoting the production and marketing of good quality seed potatoes, by establishing four Rural Entrepreneurs Nuclei. The programme promotes gender equity, good dietary habits, the consumption of more nutritious potatoes and empowers local leadership to strengthen governance. Field work was conducted in southern and central regions of Colombia by employing social strategies such as the Family Farming Community Schools. In 50% of the cultivated area, we are replacing the originally used traditional yellow potatoes by the new, more nutritious, potatoes to reach 6 million consumers. A good quality seed system for small-scale potato growers has been implemented. These achievements have been reached through a comprehensive approach in a period of two years.     

Lysimetric study of eucalypt residue management effects on N leaching and mineralization

The effects of woody residues from Eucalyptus globulus Labill. plantations on N losses were assessed through a lysimetric experiment. Treatments were: (NW) forest floor litter and non-woody residues (leaves, bark, twigs) incorporated into the soil; (IP) as NW plus woody residues (branches) cut in 20-cm long pieces and incorporated into the soil; (IC) as IP, but with branches chopped into chips; (SP) non-woody and woody residues (pieces) placed on the soil surface; (SC) as SP plus branches chopped into chips; and (CT) absence of organic residues. Leaching of N-NO ₃ ^? and N-NH ₄ ⁺ was followed during a six-year period and N mineralization was evaluated at the end of the experiment. Non-woody residues enhanced N leaching as compared with the control. Conversely, woody residues decreased N losses. Although differences between treatments were not significant at the end of the experiment, incorporation and fragmentation of woody residues resulted in the more favourable management option regarding the reduction of N leaching observed at short-term. As high amounts of residues were used, the effect observed on decrease N leaching could be higher than that existing in Portuguese eucalypt plantations.     

Effects of organic residue management and legume cover on growth of pine seedlings, nutrient leaching and soil properties

? The short-term effect of organic residue management on the growth and nutrition of Pinus pinaster Ait. seedlings, and on nutrient leaching and chemical properties of an acid soil was assessed through a lysimeter experiment. Treatments included absence, placement on the soil surface, and incorporation into the soil (with and without legume cover cropping) of organic residues (forest floor litter or forest floor litter plus harvest residues).

? Residues placed on the soil surface enhanced seedling growth. Organic residues reduced nutrient losses (NO ₃ ^? , Ca and Mg) and resulted in nutrient accumulation in the soil. Harvest residues positively affected K seedling nutrition status and enhanced K soil accumulation.

? Legume cover cropping reduced soil nutrient losses (N, Ca, Mg and K) during the early stage of seedling growth; it also improved seedling nutrition status (N and P), but without any effect on growth.

? Harvest residues plus forest floor litter placed on the soil surface was the most appropriate management to both reduce nutrient losses through leaching and increase height of seedlings at the end of the experimental period (two years).

     

Skin and coat traits in sheep in Brazil and their relation with heat tolerance

The objective of this study was to evaluate and compare physical parameters in groups of sheep with different phenotypic characteristics in the Centre-west region of Brazil. Five groups of sheep, with nine animals per group, were selected, three groups of Santa Inês animals with different coat colours (white, brown and black), one group with crossbred animals (Santa Inês × Bergamasca) and one group with animals of the Bergamasca breed. The following traits were evaluated: coat thickness, number and length of hair, pigmentation level in the coat and the skin as well as the percentage area of sweats glands in the skin tissue, carried out by histological analysis. The number of hairs and the area of sweats glands were not significantly different between the evaluated groups. The Bergamasca breed showed low pigmentation of the skin and long hairs. The levels of pigmentation of the hair and of the skin were highly correlated. Between the Santa Inês groups, the group with white hair showed the better parameters for heat adaptation, while the brown hair group showed the lower heat adaptation when compared with another hair breed groups.     

Energy or nutrient regulation of decomposition: Implications for the mineralization-immobilization response to perturbations

A model developed previously to describe the turnover of forest soil nitrogen is modified here to explain the effects of carbon and nitrogen additions on their dynamics. The model, which is structurally very simple, seems to explain correctly, among other phenomena, the negative correlation between N mineralization and CO₂ evolution observed in many experimental situations. An important variable used to explain this behaviour is the deficiency factor, which is related to the critical C-to-nutrient ratio and which gives a measure of the C or nutrient deficiency in the substrate with respect to the needs of the decomposers. Ways are discussed in which the model output can be used to explain the observed retention in the soil of fertilizer N added to mature forest soils.     

Postharvest treatment of isothiocyanates to control Alternaria rot in netted melon

The fungicidal activity of allyl-isothiocyanate (allyl-ITC), benzyl-isothiocyanate (benzyl-ITC) and a mixture of isothiocyanates (allyl-ITC, benzyl-ITC, phenyl-isothiocyanate and 2-phenylethyl-isothiocyanate; MCIT), was tested in netted melon infected with Alternaria alternata as, was the effect of these compounds on the postharvest quality. Fruits were inoculated with A. alternata and exposed to allyl-ITC, benzyl-ITC, or MCIT, at 0.25 and 0.5 mg ml⁻¹ concentrations. A commercial fungicide, Captan (CF), was used as a positive control. The fruit was stored at 20°C and 92% relative humidity for up to 8 days. Allyl-ITC and MCIT at both tested concentrations, significantly reduced Alternaria rot, by 82.73% to 88.67%. None of the ITC treatments had a significant effect on weight loss, total soluble solids, titratable acidity or pH. Fruits treated with 0.5 mg ml⁻¹ of AITC were more firm than others. Treatment with allyl-ITC, benzyl-ITC, or MCIT appears to be a promising alternative to synthetic fungicides for controlling postharvest diseases in netted melon.     

Lentil (Lens culinaris L.) growth promoting rhizobacteria and their effect on nodulation in coinoculation with rhizobia

Lentil is cultivated in Chilean Mediterranean drylands, in areas with soils that are nutrient depleted and eroded. Inoculation of lentil with rhizobia in co-inoculation with growth promoting rhizobacteria would allow higher biomass and an opportunity for early nodulation and increased nitrogen fixation. The objective of this research was to select rhizosferic bacteria (PGPR) from lentils and to evaluate their effect on lentil nodulation in co-inoculation with rhizobia. Sixty three lentil rhizobacteria isolates where obtained from nine soils in the mediterranean area. These were fingerprinted through BOX-PCR reducing the number to 57 distinct strains. The strains were evaluated for ACCdeaminase activity, IAA production and compatibility with rhizobia. Seventeen strains showed ACC-deaminase activity, all of them synthesized IAA and 38 were compatible with the rhizobia. Ten selected strains were identified as Pseudomonas spp. through 16S rRNA sequencing. The strains were inoculated in lentil seedlings growing on seed germination pouches, to evaluate nodule formation. The strain LY50a increased early nodulation in 85% in comparison to the control inoculated with rhizobia (AG-84) only. In conclusion, bacteria from the rhizosphere from Mediterranean soils of Chile can be used as nodulation promoters in lentils.