The use of infrared spectroscopy and machine learning tools for detection of Meloidogyne infestations

Plant parasitic nematodes are generally soilborne pathogens that attack plants and cause economic losses in many crops. The infested plants show nonspecific symptoms or, often, are symptomless; therefore, diagnosis is performed by taking soil and root tissue samples. Here, we show that a combination of different infrared spectra analysis and machine learning algorithms can be used to detect plant parasitic nematode infestations before symptoms become visible, using leaves instead of roots and soil as samples. We found that tomato and guava plants infested with Meloidogyne enterorlobii produced different spectral patterns compared to uninfested plants. Using partial spectra from 1,450 to 900/cm as the "fingerprint region", principal component analyses indicated that after 5 (tomatoes) or 8 weeks (guava), plants with no visible symptoms of infestations were positively diagnosed. To improve the early detection response, we used machine learning modelling. A support vector machine (SVM) was used to obtain more robust, accurate models. The SVM model contained 34 support vectors, 17 for each level. The overall performance of the model was >97% and the total accuracy was significantly higher, demonstrating the absence of chance prediction. The best prediction of infestation was obtained at the second and fourth weeks for tomatoes and guavas, respectively, reducing the diagnostic time by half. The combined application of these techniques reduces the processing time from field to laboratory and shows enormous advantages by avoiding root and soil sampling.     

鲜食糯玉米杂交种——凤糯2146的选育及应用

为了提高鲜食糯玉米的产量，改进品质，经过8年近11个世代的选育，育成了凤糯2146糯玉米杂交种。     

Ethanol/Water extraction combined with solid-phase extraction and solid-phase microextraction concentration for the determination of chlorophenols in cork stoppers

The appearance of 2,4,6-trichloroanisole (TCA) in cork stoppers is of great concern because it can cause off-flavors in bottled wine. To prevent this sensorial defect, there should not be any traces of 2,4,6-trichlorophenol (TCP), 2,3,4,6-tetrachlorophenol (TeCP), or pentachlorophenol (PCP) in the finished corks, because they are the direct precursors of TCA. In the course of this study two methodologies based upon an extraction with ethanol/water mixtures to determine the chlorophenolic content in cork matrices were developed. The cork extract is preconcentrated using both solid-phase extraction and solid-phase microextraction methodologies. The latter was optimized by applying a full two-level factorial design. Finally, spiked ground corks at nanogram per gram levels of each chlorophenol were analyzed under optimal conditions and by applying both procedures. The obtained results demonstrate that chlorophenols can be detected in corks contaminated at the nanogram per gram level and, thus, these approaches can be successfully applied as quality control measures in the cork industry.     

Targeted metabolite analysis and antioxidant potential of Rumex induratus

Targeted metabolite analysis of aqueous extract of Rumex induratus leaves, in terms of phenolic compounds and organic acids, and the study of its antioxidant activity against the DPPH(*) radical, a reactive oxygen species, hypochlorous acid, and a reactive nitrogen species, nitric oxide ((*)NO), were performed. The samples were collected in several locations, spontaneously occurring or from greenhouse culture, at different stages of development and seasons. The phenolic composition was achieved by high-performance liquid chromatography (HPLC)-diode array detection, and four hydroxycinnamic acid derivatives and 10 flavonoid glycosides (C- and O-heterosides) were determined. Organic acids composition was established by HPLC-UV, revealing five compounds. The total amount of phenolic compounds and organic acids were affected by growing conditions and developmental phase. The aqueous extract exhibited a dose-related activity against all tested reactive species.     

Organic carbon stocks and soil erodibility in Canary Islands Andosols

Soil organic carbon (SOC) plays a key role in the structural stability of soils and in their resistance against erosion. However, and as far as andic soils are concerned, these mechanisms and processes, as well as the influence of the different types of SOC on aggregate stability, are not fully understood. The targets of this paper are: (i) to determine the content and forms of SOC in Andosols under evergreen forest vegetation [laurel (Laurus) and heather (Erica) forest] and (ii) to find out the role of soil organic matter (SOM) in the aggregate stability and in the resistance of Andosols to water erosion. Soil samples have been collected in 80 sites in a 40 km² area under udic soil moisture regime. In them, fulvic and humic acids, Walkley–Black SOC, pyrophosphate-extractable SOC, Fe and Al, potassium sulphate extractable SOC, dissolved SOC, acid oxalate-extractable Fe, Al and Si, USLE K-factor and aggregate stability have been determined. The Andosols over volcanic ash are Aluandic Andosols (non-allophanic Andosols), whereas over basaltic lava flows are Silandic Andosols (allophanic Andosols). The surface (0–30 cm) samples analyzed contain 9.5–30 kg C m^− 2 being significantly higher in allophanic Andosols (p < 0.5). Organic carbon adsorbed onto the mineral fraction (extractable pyrophosphate, C_p) accounts for 35–55% of the total SOC. All samples show a high stability to slaking and raindrop impact, being the first one highly correlated (r = 0.6) with pyrophosphate extractable C (C_p), Fe (Fe_p), and Al (Al_p) in allophanic Andosols, unlike non-allophanic ones. The stability to raindrop impact correlates with pyrophosphate extractable C (C_p) and Fe (Fe_p) in both types of soils (r = 0.3–0.6, p < 0.05). These findings suggest that the high stability to both slaking and water-drop impact is due to the occurrence of allophane–Fe–OC complexes, rather than to the total OC, and the active Fe and Al forms, generated by the weathering of volcanic materials, constitute an essential constituent responsible for C sequestration and resistance to degradation in these soils.     

Effect of site and storage conditions on quality of industrial fresh pepper

The commercial expansion of roasted pepper as a high market value product have made that the period of time in which canning industries process the fresh pepper fruits needs to be extended. Fresh sweet pepper (Capsicum annuum L.) destined for industry grown in different sites was cold stored in order to analyse the effect of different sites and storage conditions on the quality of the product at harvest and during storage. Storage during 10 days at 8 °C was the best storage condition to improve quality of pepper destined for industry, because colour was improved, weight loss (1–1.6%) was lower than maximum permissible and decay incidence was only between 0% and 2.3%. Harvest should be delayed until pepper reaches the red state in order to increase the quality of the fruit. However, these results suggest that pepper growers should assure a high content of Ca (>0.6 g kg⁻¹) in the soil to avoid a high incidence of decay during storage when a late harvest is needed to guarantee the enhancement of colour in pepper fruit destined for industry. These storage conditions are in accordance with those found to improve the sensory quality of roasted pepper.     

Inactivation of TNF signaling by rationally designed dominant-negative TNF variants

Tumor necrosis factor (TNF) is a key regulator of inflammatory responses and has been implicated in many pathological conditions. We used structure-based design to engineer variant TNF proteins that rapidly form heterotrimers with native TNF to give complexes that neither bind to nor stimulate signaling through TNF receptors. Thus, TNF is inactivated by sequestration. Dominant-negative TNFs represent a possible approach to anti-inflammatory biotherapeutics, and experiments in animal models show that the strategy can attenuate TNF-mediated pathology. Similar rational design could be used to engineer inhibitors of additional TNF superfamily cytokines as well as other multimeric ligands.     

Morphological Analysis of the Tongue and the Digestive Tube of Saffron Finch (Sicalis flaveola brasiliensis,LINNAUES 1766) Apprehended by CETAS/IBAMA‐PB

The saffron finch (Sicalis flaveola brasiliensis) is a Passeriforme of the Brazilian wildlife. There are scarcely any morphological studies on it, although it is frequently trafficked for its birdsong abilities. Its peculiarities, such as territorialism and developed syrinx that provides outstanding song, draw attention towards its domestication. Thus, this study aimed to morphologically describe the tongue and digestive tube organs of this species to furnish subsidies for nutritional, clinical and conservation studies. Forty‐one birds from the Wild Animal Screening Center (CETAS)/Brazilian Institute of Environment (IBAMA)/city of Cabedelo, state of Paraíba (PB) were used. Samples were collected, identified and sent to standard light microscopy; samples of proventriculus and gizzard were sent to Scanning Electron Microscopy (SEM). The samples showed stratification similar to that of other domestic and wild birds, confirmed in the scanning electron microscopy; however, they differed in the absence of dermal papillae in the tongue, lack of ingluvial glands and lack of muscular mucosa and sub‐mucosa in the large intestine.     

Effect of Leptin on In Vivo Goat Embryo Production

The aim of this study was to evaluate the effect of leptin administration during superovulation on in vivo goat embryo production. Ten mature does were superovulated with 133 mg follicle‐stimulating hormone (FSH) i.m. in six descending doses at 12‐h intervals. The goats received 4.8 μg/kg human recombinant leptin s.c. (leptin group, n = 5) or phosphate‐buffered saline (PBS) (control group, n = 5) with the first and second FSH doses. The does were mated and subjected to embryo collection by transcervical technique 6 days later. The total number of cells per embryo and the number of cells with fragmented DNA were assessed in selected blastocysts by combining Hoechst 33342 and terminal dUTP nick‐end labelling (TUNEL) staining. Plasma concentrations of oestradiol (E₂) and progesterone (P₄) were determined by electrochemiluminescence from the day of FSH treatment, on the day of superovulatory oestrus and on the day before embryo collection. Compared with the control group, the does that received leptin had a higher number of transferable embryos (p < 0.005), fewer embryos classified as degenerated (p < 0.001) and fewer TUNEL‐positive cells/blastocyst (p < 0.001). The number of transferable embryos was positively correlated with E₂ concentrations on day of oestrus (r = 0.562; p < 0.01) and P₄ concentrations on the day of embryo collection (r = 0.912; p < 0.001). We concluded that in vivo leptin administration during FSH treatment improved embryo quality and affected ovarian steroidogenesis in superovulated goats.     

<Emphasis Type="Italic"> Xenostrobus securis </Emphasis>(Lamarck, 1819) (Mollusca: Bivalvia): first report of an introduced species in Galician waters

The presence of the non-indigenous species, the black-pygmy mussel Xenostrobus securis, is reported here for the first time in an intense shellfish farming area off Galicia (NW Spain). Very high concentrations of this mytilid bivalve have colonized estuarine waters located at the inner part of the Ria de Vigo. The invasive role of X. securis is discussed in the context of the wide ecological tolerance of the species and the recent finding of settlements of this species on numerous colonies of the economically-important blue mussel Mytilus galloprovincialis. The mode of introduction of the black-pygmy mussel is also discussed in relation to human management activities.