Development and application of functional markers in maize

Summary Functional markers (FMs) are derived from polymorphic sites within genes causally involved in phenotypic trait variation (Andersen, J.R. & T. Lübberstedt, 2003. Trends Plant Sci 8: 554–560). FM development requires allele sequences of functionally characterized genes from which polymorphic, functional motifs affecting plant phenotype can be identified. In maize and other species with low levels of linkage disequilibrium, association studies have the potential to identify sequence motifs, such as a few nucleotides or insertions/deletions, affecting trait expression. In one of the pioneering studies, nine sequence motifs in the dwarf8 gene of maize were shown to be associated with variation for flowering time (Thornsberry, J.M., M.M. Goodman, J. Doebley, S. Kresovich, D. Nielsen & E.S. Buckler, 2001. Nat Genet 28: 286–289). Proof of sequence motif function can be obtained by comparing isogenic genotypes differing in single sequence motifs. At current, the most appropriate approach for this purpose in crops is targeting induced local lesions in genomes (TILLING) (McCallum, C.M., L. Comai, E.A. Greene & S. Henikoff, 2000. Nat Biotechnol 18: 455–457). In central Europe, maize is mainly grown as forage crop, with forage quality as major trait, which can be determined as proportion of digestible neutral detergent fiber (DNDF). Brown midrib gene knock out mutations have been shown to be beneficial for forage quality but disadvantageous for overall agronomic performance. Two brown midrib genes (bm1 and bm3) have been shown to be involved in monolignol biosynthesis. These two and additional lignin biosynthesis genes have been isolated based on sequence homology. Additional candidate genes putatively affecting forage quality have been identified by expression profiling using, e.g., isogenic bm lines. Furthermore, we identified an association between a polymorphism at the COMT locus and DNDF in a collection of European elite inbred lines.     

Genetic diversity of seeds from four German Douglas fir (Pseudotsuga menziesii) seed orchards

European Journal of Forest Research - In Germany, Douglas fir (Pseudotsuga menziesii Franco) is seen as a valuable species for future cultivation in times of climate change. Local seed production...     

Establishment techniques in under-sown perennial ryegrass for seed production

Abstract

Establishment methods have proven to be of major importance for grass-seed production. The objective of this research was to test the effect of different sowing techniques on plant establishment and the subsequent seed yield. Perennial ryegrass (Lolium perenne L.) is used as the model grass due to its large importance in Danish agriculture.

In a three-year trial six different methods of under-sowing of perennial ryegrass in a spring barley cover crop were employed. Perennial ryegrass was either sown directly at different depths within the spring barley (Hordeum vulgare L.) rows or placed 2, 6, or 12 cm from the spring barley rows. Results of dry-matter yield indicate that the best establishment of the grass occurred when placing the grass 6 or 12 cm from the cover-crop row, and this is of importance in less vigorous grasses. Overall, no seed-yield difference has been observed for perennial ryegrass when placing the grass 2, 6, or 12 cm from the cover-crop row. Placement of the ryegrass seed crop 6 cm from the cereal row showed that a significant yield increase of 34–71 kg ha^?1 can be obtained compared with sowing in the cereal row.     

Quantitative trait loci mapping of forage agronomic traits in six mapping populations derived from European elite maize germplasm

Four agronomic traits were analysed including dry matter concentration (DMC) and dry matter yield (DMY) for stover, plant height (PHT) and days from planting to silking (DPS). We mapped quantitative trait loci (QTL) in three populations with doubled haploid lines (DHL), one RIL population and two testcross (TC) populations derived from crosses between two of the four populations mentioned above to elite tester lines, based on field phenotyping at multiple locations and years for each; 146–168 SSRs were used for genotyping of the four mapping populations. Significant high phenotypic and genotypic correlations were found for all traits at two locations, while DMC was negatively correlated with the other traits. A total of 42, 41, 54, and 45 QTL were identified for DMC, DMY, PHT, and DPS, respectively, with 9, 7, 12, and 7 major QTL for each trait. Most detected QTL displayed significant interactions with environment. Major QTL detected in more than two populations will contribute to marker‐assisted breeding and also to fine mapping candidate genes associated with maize agronomic traits.     

Precondition for Integration: In Support of Stand-alone Social Science in Rangeland and Silvopastoral Research

Most agree that social and ecological approaches should be integrated to ensure sustainable management of natural resources. However, an analysis of the content of three problem-based journals shows that if social sciences are included at all, they are typically subservient to natural sciences, and that quantitative approaches are privileged. We argue that true integration is achievable only if natural sciences and social sciences are each robust and if they meet eye to eye. We call for more openness to stand-alone social science research in problem-based journals, especially to research using qualitative methods. We highlight the potential insights derived from studying decision makers at the microlevel: the pastoralists, farmers, ranchers, and foresters who make final management choices. We argue that publishing such qualitative social sciences promotes dialogue across disciplines, strengthens integration, and increases the real-world impact of research.     

Effect of Fish Silage on Yield and Chemical Composition of Italian Ryegrass (Lolium multiflorum Lam.)

Seed production of spinach (Spinacea oleracea L.) is positively affected by increasing the amounts of nitrogen (N); however, regulations restrict the application rate of N in Danish agriculture. The aim of our study was to test different N application strategies in spinach seed production and their effects on N concentration, seed yield, seed weight and germination. A total amount of 100–150 kg N ha^?1 was broadcast or placed at sowing or applied as a split application at sowing and pre-elongation at the Danish Institute of Agricultural Sciences, location Flakkebjerg. Seed yields were positively affected by the high N applications, but no difference was observed between 150 kg N ha^?1 broadcast at sowing, and 40 kg N ha^?1 broadcast at sowing with an additional late application at a rate based on soil mineral N analysis. No consistent pattern was observed between N management strategy and seed weight or N management strategy and germination. A high N concentration in the plants at the start of growth showed negative effects on final seed yield, whereas later in the season there was a significantly positive correlation between N concentration in the plants and seed yield. A soil mineral analysis can be used as a tool to adjust the N application rate when a split application strategy is chosen.     

Bulk milk-estimated seroprevalence of Fasciola hepatica in dairy herds and collecting of risk factor data in East Frisia, northern Germany

The liver fluke Fasciola (F) hepatica is one of the most important trematodes in cattle farming worldwide. Fasciolosis in dairy cows is leading to production losses due to decreased milk yield, liver condemnation and impaired reproduction. The treatment of dairy cows is unsatisfactory, because available drugs are either effective against adult flukes only or have long withdrawal times or in some countries may not be used at all. In the present study the prevalence of F. hepatica in dairy farms located in East Frisia, which is part of the federal state Lower Saxony, was investigated. East Frisia is considered a high risk area for Fasciola hepatica infections, because of its coastal location, high precipitation and moist pastures. About 750 bulk milk samples were collected in January and November 2006 and analysed for F. hepatica antibodies using the Pourquier ELISA. In addition, questionnaires, which were answered by 260 of the participating farmers, were evaluated to analyse management-related factors associated with fasciolosis. In January and November, 52.1% and 53.6% of the bulk milk samples, respectively, showed positive results. Thereby, 88.1% of the examined farms showed an unchanged infection status, whereas 6.2% of the farms became seropositive during the grazing season and 5.8% of the dairy herds turned seronegative. Statistical analysis revealed a significant negative association between average annual milk production and the frequency of infections with F. hepatica.