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1.
Abundance indices (AIs) provide information on population abundance and trends over time, while AI variance (AIV) provides information on reliability or quality of the AI. AIV is an important output from surveys and is commonly used in formal assessments of survey quality, in survey comparison studies, and in stock assessments. However, uncertainty in AIV estimates is poorly understood and studies on the precision and bias in survey AIV estimates are lacking. Typically, AIV estimates are “design based” and are derived from sampling theory under some aspect of randomized samples. Inference on population density in these cases can be confounded by unaccounted process errors such as those due to variable sampling efficiency (q). Here, we simulated fish distribution and surveys to assess the effect of q and variance in q on design‐based estimates of AIV. Simulation results show that the bias and precision of AIV depend on the mean q and variance in q. We conclude that to fully evaluate the reliability of AI, both observation error and variability in q must be accounted for when estimating AIV. A decrease in mean q and an increase in the variance in q results in increased bias and decreased precision in survey AIV estimates. These effects are likely small in surveys with mean q ≥ 1. However, for surveys where q ≤ 0.5, these effects can be large. Regardless of the survey type, AIV estimates can be improved with knowledge of q and variance in q. 相似文献
2.
Saori MIURA Noriyuki HORIUCHI Kotaro MATSUMOTO Yoshiyasu KOBAYASHI Shin-ichiro KAWAZU Hisashi INOKUMA 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2015,77(7):883-887
Monoclonal integration of bovine leukemia virus (BLV) proviral DNA into bovine genomes
was detected in peripheral blood from two clinical cases of enzootic bovine leukosis (EBL)
without enlargement of superficial lymph nodes. A BLV-specific probe hybridized with 1 to
3 EcoRI and HindIII fragments in these 2 atypical EBL
cattle by Southern blotting and hybridization, as well as in 3 typical EBL cattle. The
probe also hybridized to a large number of EcoRI and
HindIII fragments in 5 cattle with persistent leukosis. These results
suggest that the detection of monoclonal integration of BLV provirus into the host genome
may serve as a marker of monoclonal proliferation and malignancy in difficult to diagnose
EBL cattle. 相似文献
3.
Kazuhiro WATANABE Kotaro HAYASHI Saku KIJIMA Chie NONAKA Kazuaki YAMAZOE 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2015,77(10):1323-1325
In this study, scaling, polishing and daily tooth brushing were performed in 20 beagle
dogs, and the number of oral bacteria was determined using a bacterial counter. The dogs
were randomized into the scaling (S), scaling + polishing (SP), scaling + tooth daily
brushing (SB) and scaling + polishing + tooth daily brushing (SPB) groups. Samples were
collected from the buccal surface of the maxillary fourth premolars of the dogs
immediately after scaling and every week thereafter from weeks 1 to 8. Throughout the
study, the number of bacteria was significantly lower in the SB and SPB groups compared
with the S group. The findings suggest that daily tooth brushing inhibited oral bacterial
growth in the dogs. 相似文献
4.
Toru Kohama Nobuya Mizoue Satoshi Ito Akio Inoue Kotaro Sakuta Hiroyuki Okada 《Journal of Forest Research》2006,11(4):235-242
We examined the extent to which direct and indirect measures of light and microsite conditions could explain variation in
tree height and diameter at the base of 6-year-old Cryptomeria japonica trees planted in a group selection opening of about 0.32 ha on a steep slope at Shiiba, Miyazaki Prefecture, southern Japan.
We first used the gap light index (GLI) and soil thickness (ST) as directly measured indices. For an indirect measure of light, we used a between-cohort competition index (BCI) estimated from the position and total height of residual trees. For indirect measures of microsite, we examined topographic
indices (slope, plan and profile curvature, average slope gradient, and relative elevation) derived from digital elevation
models (DEMs) with different resolutions ranging from 2 to 10 m. The multiple linear regression using GLI and ST explained about 45% of variation in tree size, while simple regression using only GLI explained about 35%. The contribution of ST was about half of GLI. The multiple regressions using BCI and the topographic indices did not explain any more variation than using BCI alone (R
2 of about 0.26). We conclude that microsite conditions with shallower soil and steeper slope have negative effects on tree
growth in group selection openings, although the relative importance is smaller than light conditions. More comprehensive
studies considering several openings with more heterogeneous topography including different species are needed to generalize
our growth prediction using the indirect measures, which are useful for practical forest management. 相似文献
5.
6.
Su Lai Yee Mon Moe Lwin Aye Aye Maw Lat Lat Htun Saw Bawm Kotaro Kawabe Yasuhiko Wada Shin Okamoto Takeshi Shimogiri 《Animal Science Journal》2021,92(1):e13647
Myanmar indigenous chickens play important roles in food, entertainment, and farm business for the people of Myanmar. In this study, complete mitochondrial D-loop sequences (1232 bp) were analyzed using 176 chickens, including three indigenous breeds, two fighting cock populations, and three indigenous populations to elucidate genetic diversity and accomplish a phylogenetic analysis of Myanmar indigenous chickens. The average haplotype and nucleotide diversities were 0.948 ± 0.009 and 0.00814 ± 0.00024, respectively, exhibiting high genetic diversity of Myanmar indigenous chickens. Sixty-four haplotypes were classified as seven haplogroups, with the majority being haplogroup F. The breeds and populations except Inbinwa had multiple maternal haplogroups, suggesting that they experienced no recent purifying selection and bottleneck events. All breeds and populations examined shared haplogroup F. When 232 sequences belonging to haplogroup F (79 from Myanmar and 153 deposited sequences from other Asian countries/region) were analyzed together, the highest genetic diversity was observed in Myanmar indigenous chickens. Furthermore, Myanmar indigenous chickens and red junglefowls were observed in the center of the star-like median-joining network of 37 F-haplotypes, suggesting that Myanmar is one of the origins of haplogroup F. These findings revealed the unique genetic characteristic of Myanmar indigenous chickens as important genetic resources. 相似文献
7.
Tetsuo Asai Kaori Masani Chizuru Sato Mototaka Hiki Masaru Usui Kotaro Baba Manao Ozawa Kazuki Harada Hiroshi Aoki Takuo Sawada 《Acta veterinaria Scandinavica》2011,53(1):52
A total of 318 Escherichia coli isolates obtained from different food-producing animals affected with colibacillosis between 2001 and 2006 were subjected to phylogenetic analysis: 72 bovine isolates, 89 poultry isolates and 157 porcine isolates. Overall, the phylogenetic group A was predominant in isolates from cattle (36/72, 50%) and pigs (101/157, 64.3%) whereas groups A (44/89, 49.4%) and D (40/89, 44.9%) were predominant in isolates from poultry. In addition, group B2 was not found among diseased food-producing animals except for a poultry isolate. Thus, the phylogenetic group distribution of E. coli from diseased animals was different by animal species. Among the 318 isolates, cefazolin resistance (minimum inhibitory concentrations: ≥32 μg/ml) was found in six bovine isolates, 29 poultry isolates and three porcine isolates. Of them, 11 isolates (nine from poultry and two from cattle) produced extended spectrum β-lactamase (ESBL). The two bovine isolates produced blaCTX-M-2, while the nine poultry isolates produced blaCTX-M-25 (4), blaSHV-2 (3), blaCTX-M-15 (1) and blaCTX-M-2 (1). Thus, our results showed that several types of ESBL were identified and three types of β-lactamase (SHV-2, CTX-M-25 and CTX-M-15) were observed for the first time in E. coli from diseased animals in Japan. 相似文献
8.
Horiguchi K Naito J Ishida M Harigaya T 《The Journal of reproduction and development》2007,53(3):515-523
Several studies have indicated that prolactin (PRL) assumes oligomeric, proteolytically cleaved, phosphorylated and glycosylated forms. Phosphorylated PRL (PPRL) is considered to be the most important posttranslationally modified form in the rat. In the present study, we examined whether or not PRL is present in the mouse pituitary gland in the phosphorylated form. Mouse pituitary PRL was digested with acid phosphatase, resolved by two-dimensional gel electrophoresis, stained with Coomassie brilliant blue, and then immunoblotted against the anti-PRL, anti-phosphoserine and anti-phosphothreonine antibodies. We also examined whether PRL is phosphorylated by protein kinases and semi-quantified the ratios of PPRL to PRL in the pituitary gland. The results indicated that three types of PRL are present in the pituitary glands of both male and female mice. One was non-phosphorylated (isoform 1), and the other two were immunoreactive to anti-phosphoserine (isoform 2) and/or anti-phosphothreonine (isoform 3) antibodies. The ratio between isoforms 2 and 1 of the 30-day-old female mice was higher than that of the 20-day-old female mice. However, the ratios among the three isoforms in the male pituitary glands did not differ with age. The ratio of PPRL to isoform 1 was obviously reduced after ovariectomy (OVX), and it recovered with estrogen replacement. These results suggest that estrogen influences PRL phosphorylation in female mice. 相似文献
9.
Blood samples from 78 cattle were tested for hemoplasma infection using molecular methods. PCR and sequence analysis revealed that 17 cattle were infected with Mycoplasma wenyonii, while 13 were infected with 'Candidatus Mycoplasma haemobos'. Four animals were infected with both species. This is the first study to report hemoplasma species infection among cattle in Japan. 相似文献
10.
Ogawa H Sanada Y Sanada N Kudo M Tuchiya K Kodama T Uetsuka K 《The Journal of veterinary medical science / the Japanese Society of Veterinary Science》2011,73(6):837-840
A 5-month-old female Citron-crested Cockatoo (Cacatua sulphurea citrinocristata) that was born and hand-reared in Japan died with suspected proventricular dilatation disease (PDD). Macroscopic and microscopic examinations of the bird revealed characteristic features of PDD, i.e., distention of the proventriculus and infiltration of lymphocytes and plasma cells in ganglia of various organs and in central and peripheral nerves. A linkage of this PDD case to infection with avian bornavirus (ABV) was documented by RT-PCR amplification of the virus genomes from the affected bird. Phylogenetic analysis revealed that the ABV identified in this study clustered into the genotype 2, which is one of the dominant ABV genotypes worldwide. To the best of our knowledge, this is the first report of a natural case of PDD associated with ABV infection in Japan. 相似文献