Phylogenetic analysis of Myanmar indigenous chickens using mitochondrial D-loop sequence reveals their characteristics as a genetic resource

Myanmar indigenous chickens play important roles in food, entertainment, and farm business for the people of Myanmar. In this study, complete mitochondrial D-loop sequences (1232 bp) were analyzed using 176 chickens, including three indigenous breeds, two fighting cock populations, and three indigenous populations to elucidate genetic diversity and accomplish a phylogenetic analysis of Myanmar indigenous chickens. The average haplotype and nucleotide diversities were 0.948 ± 0.009 and 0.00814 ± 0.00024, respectively, exhibiting high genetic diversity of Myanmar indigenous chickens. Sixty-four haplotypes were classified as seven haplogroups, with the majority being haplogroup F. The breeds and populations except Inbinwa had multiple maternal haplogroups, suggesting that they experienced no recent purifying selection and bottleneck events. All breeds and populations examined shared haplogroup F. When 232 sequences belonging to haplogroup F (79 from Myanmar and 153 deposited sequences from other Asian countries/region) were analyzed together, the highest genetic diversity was observed in Myanmar indigenous chickens. Furthermore, Myanmar indigenous chickens and red junglefowls were observed in the center of the star-like median-joining network of 37 F-haplotypes, suggesting that Myanmar is one of the origins of haplogroup F. These findings revealed the unique genetic characteristic of Myanmar indigenous chickens as important genetic resources.     

马鹿的起源进化与遗传多样性研究进展

马鹿是非常重要的物种资源,由于栖息地的流失和人为干扰进行近亲繁殖等导致野生马鹿数量急剧减少,而家养马鹿多经过改良,因此马鹿的纯种数量锐减。对马鹿进行分子遗传学研究不仅可以加深人们对马鹿起源和物种形成的认识,还能帮助开展遗传多样性保护研究。随着高通量测序技术、分子生物学和生物信息学的迅速发展,马鹿的起源进化研究已发展到全基因组水平,并取得了一定的成果。马鹿的起源进化研究从最初对体态外貌和染色体核型的研究逐渐发展到对DNA序列与生理指标的研究。文章回顾了近年来国内外对马鹿起源进化和遗传多样性方面的研究,从起源时间、起源地和迁徙路线等方面揭示了马鹿的演化历史,介绍了父系、母系和常染色体研究方面分析了马鹿遗传多样性选取的不同分子标记,为进一步揭示马鹿种群的遗传变异、分化情况、迁徙路线和系统发育关系等提供基础信息,同时为马鹿遗传资源的利用和保护以及马鹿产业的良性发展提供重要的借鉴与参考。     

巴音布鲁克新疆假龙胆适生地植物群落物种多样性及其环境解释

为研究新疆巴音布鲁克地区不同土壤层次环境因子对新疆假龙胆适生地植物群落物种多样性的影响,为新疆假龙胆物种多样性保护提供理论依据。采用野外样地调查的方法,在新疆假龙胆适生海拔范围内共设置了16个样地进行植物多样性统计分析,共调查到植物72种,隶属22科48属,以豆科和禾本科植物为主。根据样地内各物种重要值的大小将所有采样点的植物群落划分为5类。通过单因素方差分析和RDA分析,对植物群落多样性指数与土壤环境因子间的关系进行了分析,结果表明:物种多样性指数与土壤环境因子之间具有显著的相关关系,其中土壤全磷、全氮、总盐是影响物种多样性的主导因素。对植物群落多样性指数与土壤不同层次理化指标的进一步分析表明:影响植物群落物种多样性极显著的环境因子是0~20cm土层的全磷,其次分别是0~10cm土层的全钾和30~50cm土层的总盐和pH值。     

A pioneering survey of deep-diving and off-shore cetaceans in the northern South China Sea

A pioneering boat-based survey was conducted in 2019, to gather baseline information regarding the presence, composition, relative abundance, and spatial distribution of deep-diving and off-shore cetaceans in the northern South China Sea (SCS). A total of 27 sightings comprising at least 8 cetacean species were recorded during the 13-day survey, including 5 deep-diving species (i.e. Risso's dolphin [Grampus griseus], short-finned pilot whale [Globicephala macrorhynchus], sperm whale [Physeter macrocephalus], Cuvier's beaked whale [Ziphius cavirostris], and an unidentified beaked whale [either the ginkgo-toothed beaked whale, Mesoplodon ginkgodens, or Deraniyagala's beaked whale, Mesoplodon hotaula]), as well as 3 off-shore dolphins (i.e. pantropical spotted dolphin [Stenella attenuate], striped dolphin [Stenella coeruleoalba], and Fraser's dolphin [Lagenodelphis hosei]). With the exception of pantropical spotted dolphins, all other species were sighted and recorded at sea in the northern SCS for the first time. The pantropical spotted dolphin was the most frequently sighted species, comprising 30% of the total sightings. Deep-diving cetaceans were mainly sighted in the northern Xisha Archipelago, whereas off-shore dolphins were distributed across the survey area. The pantropical spotted dolphin was observed in aggregations of more than 100 individuals and nearly all encountered species included calves; these findings suggested that the survey area functions as an important feeding and calving ground for various cetacean species. This pioneering survey provides fundamental information regarding cetacean fauna in the northern SCS and highlights the need to strengthen research and conservation efforts concerning these species.     

人工养殖西伯利亚狍肠道微生物组成的雌雄差异

肠道微生物是一个复杂的生态系统,与宿主的健康、疾病以及其他因素有着密切的关系。目前,关于肠道菌群结构和功能的研究较多,但是对西伯利亚狍肠道菌群的研究还未见报道。西伯利亚狍(Capreolus pygargus)属于反刍动物,有独特的消化特性和微生物群来帮助它们适应高纤维的食物。本研究利用高通量测序技术在Illumina MiSeq平台上对14只狍肠道微生物进行16S rRNA基因分析。结果表明:个体样本中门类组成的差异,雌性个体JY3和雄性个体JY9除Firmicutes,Bacteroidetes,Proteobacteria这3类菌群外,其他门类菌群所占比例都很低。在科水平上,雌性个体中Ruminococcaceae在JY7和JY13肠道内含量相对较少,Bacteroidaceae在JY7,JY10和JY13中含量较高。雄性个体中Ruminococcaceae在JY11和JY14肠道内含量较少,Prevotellaceae在JY4中含量较少。在属水平上,雌性个体特有的菌属为Roseburia,Alloprevotella,Lachnospiraceae_incertae_sedis和Coprococcus;雄性个体特有的菌属为Fusobacterium,Succiniclasticum,Streptococcus和Clostridium sensu stricto。Alpha多样性分析表明,Ace指数范围2128.93—772.98,Chao1指数范围2128.89—785.27,Shannon指数范围5.44—3.78,Simpson指数范围0.07—0.01。在不同物种分类水平上,雌雄狍肠道内的优势菌群有些不同。PCoA(principal co-ordinates analysis)分析显示,狍样本几乎混在一起,没有明显差异。     

黄河兰州段湿地典型植物群落物种多样性研究

以黄河兰州段分布最广泛的芦苇-假苇拂子茅群落和酸模叶蓼-灰绿藜群落为研究对象,研究2个群落的植物物种组成和多样性特征。结果表明:芦苇群落有植物22种,隶属于13科20属,酸模叶蓼群落有植物24种,隶属于11科22属,2个群落的共种有10种,相似性系数为43.48%,菊科、禾本科、藜科、蓼科是该植物区系的优势科。物种多样性的分析说明2个群落的Pielou指数(J)波动比较小,Simpson指数(D)和Shannon-Wiener指数(H)均波动都比较大,并且H指数与J指数存在明显的正比例关系,而与D指数呈显著的反比例关系。方差分析表现出两群落S,H,D和J指数的差异并不明显,说明组成两群落的物种有一定的相似性和连续性,也存在着差异。     

9种牧草对青海同德牧区土壤特性的影响

通过对青海省高寒牧区常见的9种多年生牧草单播2年后耕层0~15cm土壤理化(pH、容重(BD)、有机碳(SOC)、全氮(TN)、无机碳(C)及微生物学性质(微生物生物量碳(Cmic)、氮(Nmic)和群落代谢功能)等指标的测定分析,结果表明,研究区域只有在种植披碱草2年后土壤有机碳含量有所增加,说明与其他草种相比,种植披碱草利于有机质的积累;试验在每年施肥1次的情况下,土壤氮含量仍然偏低,说明此区氮素被过度利用,处于缺乏水平,因此每年增施氮肥数量、频率以及时间上应加强管理。通过对不同牧草种植区土壤各因子的聚类分析,发现贫花鹅观草、无芒雀麦、紫野麦草和扁穗冰草之间相似度较高,表明其对土壤养分及微生物群落功能的影响较为接近,故在大面积种植的时候可根据牧草地上生物量/质量的高低进行选择性播种。从土壤质量方向考虑,种植杂花苜蓿、红豆草和西北羊茅不利于土地的改良。     

The genetic diversity and structure of 18 sheep breeds exposed to isolation and selection

The phylogenetic layout of the genotyped (30 microsatellite) 18 sheep breeds in this study demands and provides the opportunity to evaluate both neutral and adaptive components of genetic diversity in a naturally and artificially selected and subdivided sheep population. Seven Pramenka strains from Bosnia and Herzegovina and Croatia characterized by a very low intensity of artificial selection, preserved the highest neutral genetic variability. Eight central and north‐western European breeds under considerable artificial isolation and selection preserved the lowest genetic variability. Only combinations of various phylogenetic parameters offer a reasonable explanation for underlying evolutionary forces working in the investigated island and mainland sheep breeds under variable natural and artificial selection. More than 60% of total genetic, diversity was allocated to virtually unselected Pramenka strains, and an additional 25% to native moderately selected Graue Gehoernte Heidschnucke and intensively selected Ostfriesische Milchschafe. Some economically very important breeds and strains did not contribute to a pool with maximal genetic diversity, while they play an important role in the cultural heritage of respective countries.     

新麦草遗传多样性等位酶分析

采用不连续系统的聚丙烯酰胺垂直板凝胶电泳(VPAGE)对新疆新麦草的5个天然居群和1个栽培种遗传多样性和居群结构进行了分析.测定的6个酶系统中,确定了9个等位酶位点,多态位点百分率平均值为90.48%,平均等位基因数为2.920 7,平均预期杂合值为0.542 7.总的基因多样性中,86%存在于居群内,14%来自居群间.聚类分析以遗传距离D=0.14为分界线将6份材料明显地分为2组.研究表明,新麦草具有丰富的遗传多样性,其多样性可能与生境、人工驯化、风媒异交等因素有关.     

Nutrient addition and disturbance effects on the community composition and assembly in a desert steppe北大核心CSCD

The effects of short-term nutrient additions (NPKμ, 10 g·m- 2) and disturbances on the species diversity, functional traits, soil properties, and community assembly mechanisms of the herbaceous community in the Urat desert steppe were examined. A mixed linear model, principal component analysis, and null model methods were utilized and both disturbance and interaction treatments were found to significantly reduce species richness and β diversity. Short-term nutrient additions significantly reduced soil pH but increased soil electrical conductivity. Six functional traits of the dominant species (i.e. Stipa glareosa, Peganum harmala, Salsola collina, Corispermum mongolicum) and six community-weighted mean significant changes under the disturbance and nutrient addition treatments were identified. The disturbance and nutrient additions promoted the transformation of the dominant species in the community from conservative strategies to acquisitive strategies. The results of the two null models revealed that community assembly under the control tended to be a stochastic process, while the disturbance and interaction treatments tended to be deterministic processes, and that of the nutrient addition treatments tended to be weaker deterministic processes. Plant communities in the desert steppe responded and adapted to the nutrient additions and disturbances through changes in the dominant species and their crucial functional traits. © 2023 Chinese Academy of Sciences. All rights reserved.