Effect of soil pore size distribution on plant-available water and least limiting water range as soil physical quality indicators

Soil pore size distribution(SPSD) is one of the most important soil physical properties. This research investigated the relationships of location and shape parameters of the SPSD curves with plant-available water(PAW) and least limiting water range(LLWR) of the light-textured soils at the Torogh Agricultural Research Station in north-eastern Iran. Soil moisture release curve(SMRC), PAW and LLWR in matric heads of 100 and 330 h Pa for the field capacity and location and shape parameters of the SPSD curves of 30 soils with different texture and organic carbon contents were determined, and the variable relationships were statistically analyzed. The results showed that the median equivalent pore diameter(de), mean de, standard deviation(SD*), and skewness of the SPSD curves were significantly correlated with PAW(PAW330) and LLWR(LLWR330) measured in a matric head of 330 h Pa. Decrease in deand increase in the diversity of soil pore size(SD*) increased PAW330 and LLWR330. The SD* values of all the soil samples were lower than the optimal ranges suggested in literature. Neither PAW nor LLWR values were significantly different in the soils with the optimal modal deand those with non-optimal modal de. Optimal values of median and mean equivalent pore diameters and kurtosis of SPSD curves led to a significant improvement of PAW330 and LLWR330 as soil physical quality indicators. It was recommended to revise the optimal ranges for SD* and modal defor future studies.     

Genome-wide association analysis for stripe rust resistance in spring wheat(Triticum aestivum L.) germplasm

Stripe rust is a continuous threat to wheat crop all over the world. It causes considerable yield losses in wheat crop every year. Continuous deployment of adult plant resistance(APR) genes in newly developing wheat cultivars is the most judicious strategy to combat this disease. Herein, we dissected the genetics underpinning stripe rust resistance in Pakistani wheat germplasm. An association panel of 94 spring wheat genotypes was phenotyped for two years to score the infestation of stripe rust on each accession and was scanned with 203 polymorphic SSRs. Based on D' measure, linkage disequilibrium(LD) exhibited between loci distant up to 45 c M. Marker-trait associations(MTAs) were determined using mixed linear model(MLM). Total 31 quantitative trait loci(QTLs) were observed on all 21 wheat chromosomes. Twelve QTLs were newly discovered as well as 19 QTLs and 35 previously reported Yr genes were validated in Pakistani wheat germplasm. The major QTLs were QYr.uaf.2 AL and QYr.uaf.3 BS(PVE, 11.9%). Dissection of genes from the newly observed QTLs can provide new APR genes to improve genetic resources for APR resistance in wheat crop.     

Attribute selection and model evaluation for the maternal and paternal imprinted genes in bovine (Bos Taurus) using supervised machine learning algorithms

Imprinted genes display biased expression of paternal and maternal alleles in mammals. They are marked through epigenetic process during gametogenesis. Characterization of imprinted genes has expanded our understanding of the regulation and function of genes. In the current study, 22 experimentally validated imprinted genes in bovine (Bos Taurus) were analysed. Several supervised machine learning algorithms and attribute weighting methods were used to find characteristics of different types of imprinted genes and suggest a classification method for finding maternally and paternally expressed genes in bovine. For assessing the best model and comparing attributes in other organisms, we have also conducted a comparative analysis for human and sheep imprinted genes. According to the results of the present study, GC contents 10 and 100 kb upstream, Gly and Gln amino acids, Ile/ATC codon usage, LINE and SINE in 100kbup and length of first intron were significantly different between the maternal and paternal genes in cattle. Considering all species together, we found that GC content 100 kb up, LINE 100 kb up and the frequency of amino acids like Gly, Gln and Met were the most important attributes for identifying the paternal and maternal imprinted genes. These findings could imply conservation pattern in the attributes among these species.     

Synergism of Pratylenchus penetrans and Verticillium dahliae Manifested by Reduced Gas Exchange in Potato

ABSTRACT The effects of solitary and concurrent infection by Pratylenchus pene-trans and Verticillium dahliae on gas exchange of Russet Burbank potato (Solanum tuberosum) were studied in growth chamber experiments. Treatments were P. penetrans at low, medium, and high density; V. dahliae alone at one initial density; the combination of the nematode at these three densities and V. dahliae; and a noninfested control. Gas exchange parameters of leaf cohorts of different ages in the different treatments were repeatedly measured with a Li-Cor LI-6200 portable photosynthesis system. At 45 days after planting, joint infection significantly reduced net photosynthesis, stomatal conductance, and transpiration of 1- to 25-day-old leaf cohorts. Intercellular CO(2) levels were significantly increased by co-infection, especially in older leaves. The synergistic effect of co-infection on gas exchange parameters was greater in the oldest cohort than in the youngest cohort. No consistent effects on leaf gas exchange parameters were observed in plants infected by the nematode or the fungus alone. The relationship between the assimilation rate and stomatal conductance remained linear regardless of solitary or concomitant infection, indicating that stomatal factors are primarily responsible for regulating photosynthesis. The significant reduction of gas exchange in leaves of co-infected plants without reduction in intercellular CO(2) concentrations suggests that nonstomatal factors also play a role when both organisms are present.     

Forage sorghum yield and water use efficiency under variable irrigation

The response of forage sorghum [Sorghum bicolor (L.) Moench] to three irrigation treatments in a semiarid environment was studied in the field for two seasons. Treatments were light frequent, moderate less frequent, and heavy infrequent irrigation, where irriga-tion water at 8 mm day^–1 was delivered every 7, 10, and 13 days, respectively. These irrigation regimes meant heavier water inputs with increasing irrigation frequency. Plant heights and leaf area indices of forage sorghum were higher in the frequently watered plots than in plots where irrigation water was delivered less frequently. Averaged over the two seasons, maximum dry matter (DM) yields were 16.3, 11.8, and 10.5 tonnes ha^–1 for frequent, intermediate, and infrequent irrigation regimes, respectively. Light, frequent irrigation resulted in a significantly higher water use efficiency (WUE) compared to the other two regimes, thus increasing the return from irrigation. These results suggest that in such semiarid environments, DM yields and WUE of forage sorghum could be increased by combining light irrigation with a short interval. Received: 6 February 1997     

Antibacterial activities of a new combination of essential oils against marine bacteria

The antibacterial activities of essential oils and herbal extracts have been demonstrated against a range of bacterial species. In this study, the antibacterial effects of a new combination of essential oils from the herbs Thymus vulgaris, Salvia officinalis, Eucalyptus globulus and Mentha piperita were assayed against common bacterial isolates (Staphylococcus aureus, Escherichia coli and Pseudomonas aeroginosa) and fifteen novel marine bacteria isolates. The sensitivity of different isolates to antibacterial activity of the essential oils was determined using well diffusion assays. Minimum inhibitory concentrations (MIC) and minimum bactericidal concentrations (MBC) were quantified by micro dilution assays. The data demonstrate that the combination of essential oils had potent antibacterial effects and marine bacteria were more sensitive to growth inhibition (P < 0.05). MIC rates were 0.77–6.18 mg/ml, and MBC rates were 1.67–12.30 mg/ml. This indicates that the combined essential oils (CEO) can be a new source of antibacterial agents for use in marine aquaculture.     

Assessment of the Antibacterial Effect of Chitosan Coated with Heracleum persicum Oil on Rainbow Trout Quality

Today, due to the rapid spoilage of fish, the use of natural preservatives is a priority over those of synthetic varieties. Also, the natural antimicrobial effects of essential oils can help to increase shelf life. There are very few studies concerning the use of essential oils in this regard. In the present study, the antibacterial effect of chitosan coated with Heracleum persicum oil was investigated on the quality of rainbow trout. The control and the coated fish samples were analyzed periodically by generalized estimating equation (GEE) for total viable count (TVC), psychrophilic bacteria, total volatile base nitrogen (TVB-N), polyunsaturated fatty acids (PUFA), texture, taste, odor, and overall acceptance parameters. The results showed that by increasing the amount of chitosan, TVC, psychrophilic bacteria, and TVB-N decreased while PUFA, texture, taste, odor, and overall acceptance parameters increased.     

Effects of chronic high stocking density on liver proteome of rainbow trout (<Emphasis Type="Italic">Oncorhynchus mykiss</Emphasis>)

The main aim of the present study was to assess the effects of chronic high stocking density on liver proteome of rainbow trout. Rainbow trout juveniles (42.6 ± 2.3 g average body weight) were randomly distributed into six tanks at two stocking densities (low stocking density (LD) = 20 kg m^?3 and high stocking density (HD) = 80 kg m^?3). Both treatments were performed in triplicate tanks for a period of 60 days. High stocking density caused a reduction in the growth performance compared with LD fish. Lysozyme activity increased with stocking density, while serum complement activity presented the opposite pattern. Serum cortisol and total protein levels did not show significant differences (P > 0.05) between experimental groups. The fish reared at high stocking density showed significantly lower osmolality and globulin values but higher albumin level. The HD group had significantly higher activities of catalase, glutathione peroxidase and superoxide dismutase, and malondialdehyde content in the liver when compared to the LD group. Comparative proteomics was used to determine the proteomic responses in livers of rainbow trout reared at high stocking density for 60 days. Out of nine protein spots showing altered abundance (>1.5-folds, P < 0.05), eight spots were successfully identified. Two proteins including apolipoprotein A-I-2 precursor and mitochondrial stress-70 protein were found to increase in HD group. The spots found to decrease in the HD group were identified as follows: 2-peptidylprolyl isomerase A, two isoforms of glyceraldehydes-3-phosphate dehydrogenase, an unnamed protein product similar to fructose-bisphosphate aldolase, 78 kDa glucose-regulated protein, and serum albumin 1 protein.     

Dietary ginger administration attenuates oxidative stress and immunosuppression caused by oxytetracycline in rainbow trout (Oncorhynchus mykiss)

In the present study, potential ameliorative effects of dietary ginger (GN) were investigated on antioxidant and immune responses of rainbow trout (Oncorhynchus mykiss) during oxytetracycline (OX) administration. As a 2 × 3 factorial design, the fish were orally treated with OX (a daily dose of 100 mg/kg) and GN (either 10 or 20 g/kg diet) for 10 days. Then, blood samples were taken from each treatment to monitor plasma lysozyme, complement (ACH50), superoxide dismutase (SOD), catalase (CAT), glutathione peroxidase (GPx), glutathione‐S‐transferase (GST) activities, and reduced glutathione (GSH), malondialdehyde (MDA), total immunoglobulin (Ig) and globulin levels. OX treatment significantly decreased SOD (30%), GPx, (10%) and lysozyme (23%) activities, and GSH (19%) levels; however, it increased GST (16%) activity and MDA (28%) levels. Ten grams GN per kg levels significantly decreased SOD (35%), CAT (13%), GST (20%) and MDA (30%), but increased GSH (30%), lysozyme (48%) and globulin (16%). Twenty grams GN per kg diet significantly decreased SOD (26%) and MDA (17%), but increased lysozyme (31%) levels. Interaction effects of dietary GN and OX were observed on plasma MDA and GPx levels, as 10 g GN per kg diet prevented the OTC‐induced changes in these parameters. Moreover, 20 g GN per kg diet prevented the OX‐induced change in GPx activity and mitigated the MDA elevation by 20%. It is concluded that GN administration at 10 g/kg diet is beneficial in mitigating oxidative stress and immunosuppression of rainbow trout during OX administration.     

Gut microbiota—a positive contributor in the process of intermittent fasting-mediated obesity control

Historically, intermittent fasting (IF) has been considered as an effective strategy for controlling the weight of athletes before competition. Along with excellent insight into its application in various spaces by numerous studies, increasing IF-mediated positive effects have been reported, including anti-aging, neuroprotection, especially obesity control. Recently, the gut microbiota has been considered as an essential manipulator for host energy metabolism and its structure has been reported to be sensitive to dietary structure and habits, indicating that there is a potential and strong association between IF and gut microbiota. In this paper, we focus on the crosstalk between these symbionts and energy metabolism during IF which hold the promise to optimize host energy metabolism at various physical positions, including adipose tissue, liver and intestines, and further improve milieu internal homeostasis. Moreover, this paper also discusses the positive function of a potential recommendatory strain (Akkermansia muciniphila) based on the observational data for IF-mediated alternated pattern of gut microbiota and a hopefully regulatory pathway (circadian rhythm) for gut microbiota in IF-involved improvement on host energy metabolism. Finally, this review addresses the limitation and perspective originating from these studies, such as the association with tissue-specific bio-clock and single strain research, which may continuously reveal novel viewpoints and mechanisms to understand the energy metabolism and develop new strategies for treating obesity, diabetes, and metabolic disorders.