Genome-wide association analysis for stripe rust resistance in spring wheat(Triticum aestivum L.) germplasm

Stripe rust is a continuous threat to wheat crop all over the world. It causes considerable yield losses in wheat crop every year. Continuous deployment of adult plant resistance(APR) genes in newly developing wheat cultivars is the most judicious strategy to combat this disease. Herein, we dissected the genetics underpinning stripe rust resistance in Pakistani wheat germplasm. An association panel of 94 spring wheat genotypes was phenotyped for two years to score the infestation of stripe rust on each accession and was scanned with 203 polymorphic SSRs. Based on D' measure, linkage disequilibrium(LD) exhibited between loci distant up to 45 c M. Marker-trait associations(MTAs) were determined using mixed linear model(MLM). Total 31 quantitative trait loci(QTLs) were observed on all 21 wheat chromosomes. Twelve QTLs were newly discovered as well as 19 QTLs and 35 previously reported Yr genes were validated in Pakistani wheat germplasm. The major QTLs were QYr.uaf.2 AL and QYr.uaf.3 BS(PVE, 11.9%). Dissection of genes from the newly observed QTLs can provide new APR genes to improve genetic resources for APR resistance in wheat crop.     

Yield potential and salt tolerance of quinoa on salt‐degraded soils of Pakistan

Quinoa is recently introduced to Pakistan as a salt‐tolerant crop of high nutritional value. Open field trials were conducted to evaluate its performance on normal and salinity/sodicity‐degraded lands at two locations of different salinity/sodicity levels, S₁ (UAF Farm, Normal Soil), S₂ (Paroka Farm UAF, saline sodic), S₃ (SSRI Farm, normal) and S₄ (SSRI Farm, saline sodic) during 2013–2014. Two genotypes (Q‐2 and Q‐7) were grown in lines and were allowed to grow till maturity under RCBD split‐plot arrangement. Maximum seed yield (3,062 kg/ha) was achieved by Q‐7 at normal field (S₁) soil which was statistically similar with yield of same genotype obtained from salt‐affected field S₂ (2,870 kg/ha). Furthermore, low yield was seen from both genotypes from both S₃ and S₄ as compared to S₁ and S₂. Q‐7 was best under all four conditions. Minimum yield was recorded from Q‐2 (1,587 kg/ha) at S₄. Q‐7 had higher SOD, proline, phenolic and K⁺ contents, and lower Na⁺ content in leaves as compared to Q‐2. High levels of antioxidants and K⁺/Na⁺ of Q‐7 helped to withstand salt stress and might be the cause of higher yields under both normal and salt‐affected soils. Seed quality (mineral and protein) did not decrease considerably under salt‐affected soils even improved seed K⁺, Mg²⁺ and Mn²⁺.     

Synbiotic effect of Bacillus mycoides and organic selenium on immunity and growth of marron,Cherax cainii (Austin, 2002)

The present feeding trial examined the effect of synbiotic use of Bacillus mycoides and organic selenium (OS) as Sel‐Plex on marron immunity, growth and survival. The marron were cultured in recirculated tanks and fed test diets consisting of a basal diet; basal diet supplemented with B. mycoides (10⁸ CFU g^?1 of feed); basal diet supplemented with OS (Sel‐Plex) (0.2 g kg ^{? 1} of feed) and basal diet supplemented with synbiotic (B. mycoides at 10⁸ CFU g^?1 and OS 0.2 g kg ^{? 1} feed) diet, in triplicate. The effect of the prebiotic OS (Sel‐Plex) on the growth rate of B. mycoides was also studied in vitro. The results suggested that synbiotic use of B. mycoides and OS significantly improved some immune parameters of marron, particularly the glutathione peroxidase, and to some extent total haemocyte counts. However, the synbiotic feed did not synergistically improve marron growth, in fact the use of B. mycoides‐supplemented diet alone demonstrated significantly higher growth in marron compared with the growth of marron fed on other test diets. Supplementation of the basal diet with host origin B. mycoides significantly increased the intestinal bacterial population (3.399 ± 825 CFU g ^{? 1} of gut) in marron compared with other diets. Organic selenium as Sel‐Plex in Trypticase Soya Broth also confirmed that OS did not increase the amount of growth of B. mycoides and resulted in a lower intestinal bacterial population in the synbiotic diet‐fed marron. In conclusion, synbiotic of OS and B. mycoides may improve a particular immune parameters of marron and to a lesser extent their growth.     

Gas-phase Diffusive Tracer Test for the In-Situ Measurement of Tortuosity in the Vadose Zone

Robust measurements of porous-medium tortuosity are one of the many components needed for accurate characterization and prediction of fluid flow and contaminant transport in the subsurface. A gas-phase diffusive tracer-test method is evaluated for the in-situ measurement of tortuosity in the vadose zone. This technique presents an alternative to employing widely-used correlations to estimate tortuosity. A small-scale field study was conducted using a single well and a non-reactive gas-phase tracer (sulfur hexafluoride; SF₆). Gas samples were collected from the injection point periodically after tracer injection into the soil matrix. An effective radius of influence of 50 cm was determined for the tests. An analytical solution was calibrated to the measured temporal concentration distribution, producing a fitted value for tortuosity. The value obtained from the tracer tests was compared to values estimated with several widely-used correlations. The value obtained from the tracer tests was generally larger than the values estimated with the correlations, which spanned a relatively wide range. The tracer-test method provides a means by which to determine in-situ measurements of tortuosity, allowing for better characterization of contaminant transport in the vadose zone.     

SUMO1 haploinsufficiency leads to cleft lip and palate

The posttranslational modification sumoylation can have multiple effects on its substrate proteins. We studied a patient with isolated cleft lip and palate and a balanced chromosomal translocation that disrupts the SUMO1 (small ubiquitin-related modifier) gene, resulting in haploinsufficiency. In mouse, we found that Sumo1 is expressed in the developing lip and palate and that a Sumo1 hypomorphic allele manifests an incompletely penetrant orofacial clefting phenotype. Products of several genes implicated in clefting are sumoylated, and the Sumo1 hypomorphic allele interacts genetically with a loss-of-function allele for one of these loci. Thus, sumoylation defines a network of genes important for palatogenesis.     

Follicular dynamics and changes in oestradiol‐17β, progesterone and LH profiles following PGF2α induced oestrus in early and late ovulating Beetal goats

This study compares the factors associated with variable interval to oestrus and ovulation between early versus late ovulating goats following PGF_2α administration. The time of ovulation in Beetal goats (n = 38) was monitored through transrectal ultrasound at every 6 hr following a single dose of PGF_2α (experiment 1). Variations in oestrus and ovulation times were further explored through the changes in follicular dynamics, endocrine profiles and behaviour in another set of goats (n = 13) following single PGF_2α given randomly during the luteal phase (experiment 2). The ovulation time varied between 60 and 96 hr, and 57% of ovulations occurred by 72 hr following PGF_2α (experiment 1). Accordingly, the goats (n = 13) in the second experiment were retrospectively divided either into early and/or late ovulating, that is, ≤72 and/or ≥84 hr following PGF_2α. The onset of oestrus, peak estradiol‐17β concentration and LH surge after PGF_2α was first observed in early than late ovulating goats (p < 0.05). The goats ovulating early had larger follicle and smaller CL in diameter at the time of PGF_2α administration than those ovulating late (5.4 ± 0.2 vs. 4.3 ± 0.2 mm and 10 ± 0.6 vs. 11.8 ± 0.3 mm, respectively; p < 0.05). Likewise, plasma progesterone concentration tended to be lower (p = 0.087) in early than late ovulating goats. In conclusion, the size of dominant follicle and CL at the time of PGF_2a determines the interval to ovulation following a single dose of PGF_2a during the luteal phase.     

Genetic and Phenotypic Analysis of Soybean mosaic virus Resistance in PI 88788 Soybean

ABSTRACT Resistance to Soybean mosaic virus (SMV) was identified in PI 88788 soybean, a germ plasm accession from China that is used widely as a source of resistance to soybean cyst nematode. Strains SMV-G1 through -G7 infected the inoculated leaves of PI 88788 but were not detected in upper, noninoculated trifoliolate leaves. Inheritance of resistance was determined by inoculating progenies of crosses of PI 88788 with susceptible cvs. Essex and Lee 68 with SMV strains G1 and G7. Allelomorphic relationships with known genes for resistance to SMV were tested in crosses with the resistant genotypes PI 96983, L29, and V94-5152, possessing Rsv1, Rsv3, and Rsv4 genes, respectively. Data analyses showed that resistance in PI 88788 to SMV-G1 is controlled by a single, partially dominant gene; however, to SMV-G7, the same gene was completely dominant. The PI 88788 gene was independent of the Rsv1 and Rsv3 loci, but allelic to Rsv4 in V94-5152. Expression of the Rsv4 gene in PI 88788 resulted in a reduced number of infection sites and restricted short- and long-distance movement of virus, rather than hypersensitivity. A unique late susceptible phenotype was strongly associated with heterozygosity. This gene has potential value for use in gene pyramiding to achieve resistance to several SMV strains, as well as for rate-reducing resistance.     

Remobilization and utilization of phosphorus in wheat cultivars under induced phosphorus deficiency

A solution culture study was conducted to compare the phosphorus (P) remobilization efficiency of four wheat cultivars under induced P deficiency. Wheat cultivars, i.e. Sarsabz, NIA-Sunder, NIA-Amber and NIA-Saarang were initially grown on adequate P nutrition for 30 days and then exposed to P-free nutrient solution for next 15 days to study P remobilization. Completely randomized design (CRD) with ten replicates per cultivar was employed. Cultivars varied for biomass production, P concentration, P uptake, and P utilization efficiency at both harvests. Overall, more than 75% of absorbed P was mobilized from older leaves to younger leaves as well as roots of all cultivars during P-omission period. However, cultivars could not produce significant variations (P < 0.05) in P remobilization, which implied that P remobilization was only a stress response to P deficiency in wheat cultivars and it could not be related to P utilization efficiency of these cultivars.     

Effect of body weight on the chemical composition and collagen content of snakehead fish <Emphasis Type="Italic">Channa striata</Emphasis> skin

Snakehead fish (Channa striata) skin is a fishery by-product that has the potential for further processing because it contains a high amount of organic matter. This study investigates the effect of body weight on the chemical composition and collagen content of snakehead fish skin. This study used fresh snakehead fish of either gender. Their body weights were divided into three groups: small, medium, and large size. The characteristics of snakehead fish skin included proximate composition, amino acid content, collagen content, microstructure, and minerals. Snakehead fish skin from fish of different body weights indicated that the moisture content and ash tended to decrease, the protein content was relatively stable, and the lipid content tended to increase with increasing body weight. Glycine and proline comprised the highest percentages of amino acids at all levels of body weight, and the presence of hydroxyproline showed that snakehead fish skin was the source of collagen. There was no significant difference in body weight observed on collagen protein content of the skin. This study on the microstructure and mineral content of snakehead fish skin can be used as supporting information to promote the potential utility and economic value of the skin.     

Seasonal prevalence of coccidiosis in industrial broiler chickens in Faisalabad, Punjab, Pakistan

The present paper reports the prevalence of coccidiosis in industrial broiler chickens in Faisalabad, Punjab, Pakistan to determine the occurrence of different species of Eimeria in the area and to assess their correlation with the environmental conditions including temperature, humidity and rainfall. The study was conducted from January 2009 to December 2010. Examination of chicken guts revealed 43.89% (n = 3,283/7,480) prevalence of coccidiosis. The highest prevalence (27.04%) was recorded of Eimeria tenella followed by Eimeria maxima (22.42%), Eimeria acervulina (19.89%) and Eimeria necatrix (4.02%). The prevalence of disease was significantly higher (P < 0.05) in autumn (60.02 ± 4.38) followed by summer (47.42 ± 2.92), spring (36.92 ± 2.27) and winter (29.89 ± 3.43). Likewise, prevalence of different species of Eimeria also varied (P < 0.05) in different seasons of the year except that of E. necatrix. A strong correlation (P < 0.05) of environmental conditions with the overall and species-wise prevalence of coccidiosis was recorded except E. necatrix.