Multimarker and rare variants genomewide association studies for bone weight in Simmental cattle

Bone weight, defined as the total weight of the bones in all the forequarter and hindquarter joints, can reflect somebody conformation traits and skeletal diseases. To gain a better understanding of the genetic determinants of bone weight, we used a composite strategy including multimarker and rare‐marker association to perform genomewide association studies (GWAS) for that character in Simmental cattle. Our strategy consisted of three models: (i) A traditional linear mixed model (LMM) was applied (Q+K‐LMM); (ii) single nucleotide polymorphisms (SNPs) with p‐values less than .05 from the LMM were selected to undergo the least absolute shrinkage and selector operator (Lasso) in the second stage (LMM‐Lasso); (iii) genes containing two or more rare SNPs were examined by performing the sequence kernel association test (gene‐based SKAT). A total of 1,225 cattle were genotyped with an Illumina BovineHD BeadChip containing 770,000 SNPs. After the quality‐control procedures, 1,217 individuals with 608,696 common SNPs and 105,787 rare SNPs (with 0.001 < minor allele frequency [MAF] <0.05) remained in the sample for analysis. A traditional LMM successfully mapped three genes associated with bone weight, while LMM‐Lasso identified nine genes, which included all genes found by traditional LMM. Only a single gene, EPHB3, surpassed the significance threshold after Bonferroni correction in gene‐based SKAT. In conclusion, based on functional annotation and results from previous endeavours, we believe that LCORL, RIMS2, LAP3, PRKAR2B, CHSY1, MAP2K6 and EPHB3 are candidate genes for bone weight. In general, such a comprehensive strategy for GWAS may be useful for researchers seeking to probe the full genetic architecture underlying economic traits in livestock.     

羔羊日粮精粗比对其肉及脂肪组织中脂肪酸组成的影响

为了研究不同精粗比日粮对广河羊羔肉品质的影响,在广河县羔羊肉生产区,选择不同精粗比饲喂的6月龄健康陶寒杂交(陶赛特羊♂×小尾寒羊♀)断奶去势公羔各3只进行屠宰,取股二头肌、背最长肌、肱二头肌3个部位肌肉和肾周脂肪、皮下脂肪、尾部脂肪3个部位脂肪,用气象色谱法分析其脂肪酸的种类及含量。结果表明,在所有组织中均检测出38种脂肪酸,其中饱和脂肪酸17种,不饱和脂肪酸21种。脂肪组织中饲喂低精粗比日粮的亚油酸(C18∶2n6c)、α-亚麻酸(C18∶3n3)、饱和脂肪酸(SFA)、多不饱和脂肪酸(PUFA)及其与饱和脂肪酸比值(P/S)、n3系多不饱和脂肪酸和n6系多不饱和脂肪酸均显著高于饲喂高精粗比日粮(P<0.05);饲喂低精粗比日粮的所有组织中花生四烯酸(C20∶4)的含量显著高于饲喂高精粗比日粮(P<0.05);与饲喂高精粗比日粮的羊羔肉相比,饲喂低精粗比日粮既节省了生产成本又明显改善和提高了羊羔肉中脂肪酸的营养价值。     

短期禁牧对天山北坡蒿类荒漠群落特征及其稳定性的影响

本研究以天山北坡蒿类荒漠为研究对象,采用野外调查取样的方法,探讨不同区域荒漠围栏内外群落特征和物种多样性对禁牧的响应规律,分析禁牧对生态系统稳定性的影响。结果表明,1)禁牧能改变荒漠植被功能群结构,禁牧后不同生态经济类群群落盖度和生物量分别上升40.2%~57.0%和44.4%~81.0%;2)荒漠群落物种多样性指数对短期禁牧的响应较小,但从区域上看,玛纳斯荒漠放牧区Patrick丰富度指数、Shannon-Wiener多样性指数比博乐和奇台显著高16.7%~20.0%,而禁牧区Simpson优势度指数、Shannon-Wiener多样性指数、Pielou均匀度指数高了8.6%~17.7%;3)短期禁牧有利于荒漠群落稳定性的维持,且稳定性可能与禁牧年限和生态环境的变化均有一定的关系。因此,短期禁牧能显著提高荒漠草地生产力,有利于群落物种多样性和群落稳定性的维持。     

Impact of cold-season grazing and supplementary feeding on rumen metabolic parameters and micro-organisms in the ewes of Gansu Alpine Fine Wool Sheep北大核心CSCD

An experiment was conducted to scientifically identify the appropriate feed for Gansu Alpine Fine Wool ewes in order to change the animals' breeding mode, which currently can only be mated at the age of 2.5 years due to insufficient nutritional supply. The experiment selected 48 12-month-old ewes and randomly divided them into group a (Diet 1), group b (Diet 2), group c (Diet 3), and a control group with no supplementary feeding. The feed test was run for 90 days. The rumen pH of groups a and b were very significantly higher (P<0.01) or group c significantly lower (P<0.05) than control group. The rumen ammonia nitrogen, protein nitrogen and total nitrogen of groups a, b and c were all higher than control group (P<0.01). The total volatile fatty acids of group a and b were all higher than the control group (P<0.01), group b significantly higher than group c (P<0.05). The molar ratio of acetic acid and propionic acid in group a was very significantly higher than control group (P<0.01), group b and c were significantly higher than control group (P<0.05). The molar ratio of butyric acid in group a was very significantly higher than group c (P<0.01). The ratio of acetic acid and propionic acid in group b was significantly lower than control group (P<0.05). The number of several rumen fiber-degrading bacteria and protozoa in groups a, b and c were very significantly (P<0.01) or significantly (P<0.05) higher than the control. In conclusion, this study shows that supplementary feeding can positively affect the rumen metabolic parameters and the number of several rumen microorganisms in Gansu Alpine Fine Wool ewes. In general, the effects of Diet 1 were the strongest, while Diet 2 also produced notable improvements. © 2018, Editorial Office of Acta Prataculturae Sinica. All rights reserved.     

Differential Cl−/Salt Tolerance and NaCl‐Induced Alternations of Tissue and Cellular Ion Fluxes in Glycine max,Glycine soja and their Hybrid Seedlings

The salt‐sensitive Glycine max N23674 cultivar, the salt‐born Glycine soja BB52 population, and their hybrid 4076 strain (F₅) selected for salt tolerance generation by generation were used as the experimental materials in this study. First, the effects of NaCl stress on seed germination, tissue damage, and time‐course ionic absorption and transportation were compared. When qualitatively compared with seed germination appearance in culture dishes, and tissue damages on roots or leaves of seedlings, or quantitatively compared with the relative salt injury rate, the inhibition on N23674 was all the most remarkable. After the exposure of 140 mm NaCl for 1 h, 4 h, 8 h, 12 h, 2 days and 4 days, the content of Cl^? gradually increased in the roots and leaves of seedlings of BB52, 4076 and 23674. Interestingly, the extents of the Cl^? rise in roots of the three experimental soybean materials were BB52 > 4076 > N23674, whereas those in leaves were just on the contrary. Secondly, by using the scanning ion‐selective electrode technique (SIET), fluxes of Na⁺ and Cl^? in roots and protoplasts isolated from roots and leaves were also investigated among the three experimental soybean materials. After 140 mm NaCl stress for 2, 4 and 6 days, and when compared with N23674, slighter net Cl^? influxes were observed in root tissue and protoplasts of roots and leaves of BB52 and 4076 seedlings, especially at the cellular protoplast level. The results indicate that with regard to the ionic effect of NaCl stress, Cl^? was the main determinant salt ion for salt tolerance in G. soja, G. max and their hybrid, and the difference in their Cl^?/salt tolerance is mainly attributed to the capacity of Cl^? restriction to the plant above‐ground parts such as leaves.     

Genome‐Wide Identification of MicroRNAs Responsive to High Temperature in Rice (Oryza sativa) by High‐Throughput Deep Sequencing

MicroRNAs (miRNAs) are known to play important roles in plant growth and stress response. Heat stress is a severe abiotic stresses by adversely affecting plant growth and yield. To identify heat‐responsive miRNAs at the genome‐wide level in rice (Oryza sativa), we constructed two small RNA libraries from young panicles treated or not with heat conditions. Ion torrent sequencing of the two libraries identified 294 known miRNAs and 539 novel miRNAs. Differential expression analysis showed that 26 miRNAs were downregulated and 21 miRNAs were upregulated in response to heat stress. Among them, five heat‐responsive miRNAs, including miR162b, miR529a‐p5, PC‐5P‐62245‐9, miR171b and miR169n, were validated by quantitative real‐time polymerase chain reaction. A total of 44 target genes of the differentially expressed miRNAs were predicted. These target genes are most significantly overrepresented in the cell growth process. The results demonstrated that rice miRNAs play critical roles in the heat stress response. This study opens up a new avenue for understanding the regulatory mechanisms of miRNAs involvement in the heat stress response in rice.     

饲粮代谢能水平对14～17周龄不同性别北京油鸡育肥期生长性能、屠宰性能、肉品质及血清生化指标的影响

本试验旨在研究饲粮代谢能水平对14～17周龄不同性别北京油鸡育肥期生长性能、屠宰性能、肉品质及血清生化指标的影响，为确定北京油鸡适宜饲粮代谢能水平提供依据。本试验严格按照完全随机区组试验设计进行。选取13周龄北京油鸡600只，公母各占1/2，根据体重一致原则随机分为6组，其中3个组均为公鸡，另外3个组均为母鸡，每组5个重复，每个重复20只。3个组分别为低代谢能组（饲粮代谢能水平为12.20 MJ/kg）、中代谢能组（饲粮代谢能水平为12.64 MJ/kg）、高代谢能组（饲粮代谢能水平为13.08 MJ/kg）。预试期1周，正试期4周（14～17周龄）。结果显示：1）高代谢能组公鸡和母鸡的平均日增重显著高于其他2组（P <0.05），且高代谢能组母鸡的料重比显著低于其他2组（P <0.05），饲粮代谢能水平为13.08 MJ/kg时公鸡和母鸡有较好的生长性能。2）公鸡方面，低代谢能组的腿肌率显著高于其他2组（P<0.05）；母鸡方面，低代谢能组的全净膛率显著高于高代谢能组（P<0.05），翅膀率显著低于高代谢能组（P <0.05）。低代谢能组公鸡和母鸡的皮脂...