鱼虾贝病毒分离纯化技术概述

多年来由于水产动物病毒病的流行,在世界范围内给水产养殖业,尤其是鱼类、对虾类和贝类养殖产业带来了严重的危害.病毒的分离纯化作为研究病毒病的必要手段,作用十分重要.因此,国内外学者对此进行了大量的研究,并取得了许多成果.本文综述了这3种水产动物病毒分离纯化的研究概况.     

Rapid detection and identification of viral and bacterial fish pathogens using a DNA array-based multiplex assay

Fish diseases can be caused by a variety of diverse organisms, including bacteria, fungi, viruses and protozoa, and pose a universal threat to the ornamental fish industry and aquaculture. The lack of rapid, accurate and reliable means by which fish pathogens can be detected and identified has been one of the main limitations in fish pathogen diagnosis and fish disease management and has consequently stimulated the search for alternative diagnostic techniques. Here, we describe a method based on multiplex and broad-range PCR amplification combined with DNA array hybridization for the simultaneous detection and identification of all cyprinid herpesviruses (CyHV-1, CyHV-2 and CyHV-3) and some of the most important fish pathogenic Flavobacterium species, including F. branchiophilum, F. columnare and F. psychrophilum. For virus identification, the DNA polymerase and helicase genes were targeted. For bacterial identification, the ribosomal RNA gene was used. The developed methodology permitted 100% specificity for the identification of the target species. Detection sensitivity was equivalent to 10 viral genomes or less than a picogram of bacterial DNA. The utility and power of the array for sensitive pathogen detection and identification in complex samples such as infected tissue is demonstrated in this study.     

Current knowledge of nocardiosis in teleost fish

Nocardia sp. is the causative agent of nocardiosis, a lethal granulomatous disease of the skin, muscle, and various inner tissues affecting various teleost and shellfish. Four species of Nocardia have been isolated from diseased fish and shellfish, namely Nocardia asteroides, Nocardia seriolae, Nocardia salmonicida and Nocardia crassostreae. Therefore, in fish aquaculture, nocardiosis has caused severe economic losses, especially in the Asian region. Considerable research has been performed, since the first report of identified Nocardia sp. in fish, to characterize Nocardia sp. and identify rapid detection techniques, immune response against infection and prophylactic approaches. In this review, the current state of knowledge about nocardiosis in fish has been presented, including the pathogenesis, diagnosis, host immune response and vaccine development.     

Disease Problems Affecting Fish in Tropical Environments

ABSTRACT

Aquaculture produce in Asian countries contributes a major share to total global fish production. However, disease due to biotic and abiotic factors results in considerable losses to the industry. The most frequently encountered bacterial agents associated with fish diseases in tropical environments are Vibrio sp. in marine and brackish-water systems and motile aeromonads in freshwater systems. Virulence mechanisms of these bacterial species have been widely studied. Though a few viral agents such as rhabdovirus, reo-like virus, infectious pancreatic necrosis virus, picornavirus, and irido-like virus have been recorded in different parts of Asia, such reports are scanty. Among fungal pathogens, Aphanomyces invaderis is the most virulent and has been reported to be associated with epizootic ulcerative syndrome. Other fungal agents such as Achlya sp. and Saprolegnia sp. have been recorded in various disease conditions. In addition to various conventional microbiological and serological methods, nucleic acid-based methods are being widely adopted for diagnosis of different fish diseases. Few successful vaccines have been developed to protect against disease conditions, and some of the better known ones are against vibriosis and furunculosis. Many other vaccines are still in the experimental stages. Early diagnosis of disease and development of successful vaccines are important for the future development of aquaculture.     

特种水产养殖动物病毒病原的研究现状

本文举例阐明了病毒(及类似病毒)病原引起的突发性传染病给我国特种水产养殖业带来的重大损失和潜在威胁;分别对国内外爬行动物(包括鳖)、两栖动物(包括蛙)、虾、鳗等特种水产养殖动物病毒病原研究的情况进行了概述;将已知的病毒种类和中英文名称,按不同宿主归类列出;并根据最新资料以及有关工作进展情况,对上述几种特种水产养殖动物病毒病原研究的动态作了简介。     

鲟鱼病原性疾病研究进展

鲟是地球上最古老的物种之一。我国自1991年后开始鲟类的商业化养殖,主要品种有引进的匙吻鲟、杂交鲟、小体鲟、俄罗斯鲟和西伯利亚鲟,黑龙江流域出产的施氏鲟、达乌尔鳇,以及施氏鲟和达乌尔鳇的杂交种等。随着养殖业的发展,鲟疾病不断增多,严重制约了养殖产业的健康发展。目前发现的鲟致病性病原有病毒、细菌、真菌和寄生虫等。概述了目前国内外鲟病原性疾病的研究进展,包括感染种群、致死率、临床症状、病原分离鉴定和药物控制等方面。目前对鲟病害的研究,在发病机制、免疫防治以及结合环境和营养因素的综合防控技术等方面还十分缺乏,应系统开展鲟疾病的流行病学、病原学、诊断技术以及防控技术研究。     

传染性鲑鱼贫血症病毒实时荧光环介导等温扩增检测方法的建立

根据ISAV的基因保守序列,利用LAMP Designer软件设计了6条引物,采用新型的环介导等温扩增设备进行扩增和检测,优化了反应条件,分析了所建立方法的特异性和灵敏度,并与RT-PCR和实时荧光RT-PCR进行比较。研究表明,该方法最适反应温度为64℃,反应10 min就可以观察到明显的扩增。该方法灵敏度高,检测限为78.4 fg RNA,比常规RT-PCR灵敏度高100倍,与实时荧光定量RT-PCR灵敏度相当;特异性好,与传染性胰腺坏死病毒(IPNV)、鲤春病毒血症病毒(SVCV)、出血性败血症病毒(VHSV)、鱼类病毒性神经坏死病病毒(VNNV)、鱼腹水病毒(YAV)等14种主要鱼类病毒没有交叉反应。结果表明,本研究建立了ISAV的实时荧光环介导等温扩增检测方法,实验能对整个扩增过程进行实时监测,提高检测灵敏度的同时,防止由于开盖跑电泳或加染料而导致的污染。     

奥尔森帕金虫环介导等温扩增(LAMP)检测方法的建立及应用

奥尔森帕金虫是重要的贝类病原性寄生虫之一,为建立快速、灵敏、准确和使用简便的检测方法,实验根据奥尔森帕金虫5.8S rDNA中的内转录间隔区(internal transcribedspacer,ITS)序列,建立了环介导等温扩增(loop-mediated isothermal amplification,LAMP)检测方法,并对反应温度、反应体系中Mg2+浓度和反应时间进行了优化。该方法的检测灵敏度约为30拷贝质粒DNA,并且特异性较强,与海水帕金虫、包纳米虫、波豆虫及急性病毒性坏死病毒(acute viral necrosis virus,AVNV)等病原均无交叉反应。使用LAMP法对两批菲律宾蛤仔样品进行检测,结果表明,LAMP检测与传统PCR检测相比,灵敏度更高,检测结果更准确。实验所建立的奥尔森帕金虫LAMP检测方法简单、快速、灵敏且特异性强,可以在沿海贝类养殖厂及条件简陋的实验室使用。     

对虾的主要疾病及其诊断方法

诊断对虾病原的方法有传统的形态病理学（光镜和电镜直接观察和组织病理学等）、扩增和生物测定、微生物学和血清学方法，对皮下及造血组织坏死病毒病（IHHNV）、肝胰脏细小病毒病（HPV）、拖拉症（Taura syndrome,TS）、白斑综合症（WSSV）、斑节对虾型杆状病毒病（MBV）和杆状对虾病毒病（BP）等病原均采用非放射性的基因组探针目前已研制出了NHP、某些弧菌（Vibrio spp）和微孢子虫的传统基因探针，根据聚合酶链式反应（PCR），采用DNA扩增方法确立的检测某些病原的高敏感性方法也应用在对虾病原诊断上。     

Prebiotics in aquaculture: a review

A prebiotic is a non‐digestible food ingredient that beneficially affects the host by selectively stimulating the growth and/or the activity of one or a limited number of bacteria in the colon. Despite the potential benefits to health and performance as noted in various terrestrial animals, the use of prebiotics in the farming of fish and shellfish has been less investigated. The studies of prebiotics in fish and shellfish have investigated the following parameters: effect on growth, feed conversion, gut microbiota, cell damage/morphology, resistance against pathogenic bacteria and innate immune parameters such as alternative complement activity (ACH50), lysozyme activity, natural haemagglutination activity, respiratory burst, superoxide dismutase activity and phagocytic activity. This review discusses the results from these studies and the methods used. If the use of prebiotics leads to health responses becoming more clearly manifested in fish and shellfish, then prebiotics might have the potential to increase the efficiency and sustainability of aquaculture production. However, large gaps of knowledge exist. To fully conclude on the effects of adding prebiotics in fish diets, more research efforts are needed to provide the aquaculture industry, the scientific community, the regulatory bodies and the general public with the necessary information and tools.     

水产养殖病原微生物的分子检测

随着水产养殖集约化程度的提高,虾类、贝类和鱼类养殖业受到病原微生物的严重影响。因此如何快速准确预测和诊断水产动植物疾病,就成为当前水产养殖业十分重要而突出的问题。随着分子生物学技术的发展,以核酸杂交、PCR、DNA指纹和16SrRNA检测等为代表的分子生物学技术在水产养殖病原体检测中已有大量应用并显示出巨大的应用前景。     

病原性鳗弧菌(Vibrio anguillarum)双重PCR与LAMP检测方法的建立

本研究检测了分离自发病大菱鲆、半滑舌鳎及鲤鱼的22株病原鳗弧菌(Vibrio anguillarum)毒力相关基因的携带情况,并建立了病原鳗弧菌的分子生物学检测方法。以PCR方法检测8个毒力相关基因的分布,结果显示,22株病原鳗弧菌均可扩增出6个基因(empA、vah1、vah4、flaA、rtxA和tonB)目的条带,未扩增出virA和angM基因;针对vah4和rtxA设计引物进行双重PCR扩增,同一PCR反应体系可扩增出两条目的条带,灵敏度为2.4×103 CFU/ml,对照菌无任何扩增条带;以vah4设计引物进行LAMP扩增,病原鳗弧菌可扩增出阶梯状条带,呈现阳性反应,6株对照菌无阶梯状扩增条带且呈现阴性反应,LAMP扩增灵敏度为2.4×101 CFU/ml。LAMP检测灵敏度是双重PCR的100倍,LAMP技术与PCR比较,操作简便、快速、灵敏度高且不需昂贵仪器,LAMP检测鳗弧菌的方法更适合于养殖生产实际应用。     

白斑综合征病毒环介导等温扩增快速检测方法的建立

根据对虾白斑综合征病毒(WSSV)囊膜蛋白VP28基因保守序列,利用Primer Explorerv 4.0软件设计了4条引物,建立了白斑综合征病毒环介导等温扩增快速检测方法,对反应温度和反应时间等参数进行了优化,同时将建立的LAMP检测方法与巢式PCR进行了比较分析。结果表明,LAMP最适反应在64℃恒温条件60min内完成,凝胶电泳呈现梯型条带;反应体系中添加SYBR Green I荧光染料后,绿色的阳性结果明显区别于橙色阴性结果。LAMP方法的最低检出限为100拷贝/μL,灵敏度较巢式PCR高100倍,而且LAMP方法在1h内即可完成检测,操作简单,无需复杂仪器,肉眼可直接观察检测结果。用建立的LAMP方法对临床发病南美白对虾样品进行了检测,结果表明,LAMP方法适合对虾白斑综合征病毒的现场快速检测。     

伊维菌素在水产养殖中的应用及其水生态风险

伊维菌素是一种广谱抗寄生虫渔药,在国外被广泛用于鲑鱼、海鲷养殖中的海鲺防治.国内主要用于防治淡水鱼养殖中的各种寄生虫病,其在观赏鱼养殖中的应用也日益普遍.综述了目前国内外伊维茵素在水产养殖中的使用现状,并就其水生态风险进行评估.     

鲁氏耶尔森菌qPCR快速检测方法的建立和应用

鲁氏耶尔森菌(Yersinia ruckeri)是导致虹鳟(Oncorhynchus mykiss)肠炎红嘴病的病原。本研究以鲁氏耶尔森菌毒力因子rup A基因为靶标设计1对特异性引物,以含有rup A基因部分序列的重组质粒为标准品构建标准曲线,优化建立检测鲁氏耶尔森菌的SYBR Green I实时荧光定量PCR检测方法,并对腹腔注射鲁氏耶尔森菌菌悬液的虹鳟肝、肾、脾、血液样品进行检测。结果显示,设计的引物具有良好的种间特异性,标准曲线线性方程为y=–3.3766x+40.012(R~2=0.9958);最低检测限为57 copy/μL,较常规PCR的灵敏度高出约100倍。应用检测结果表明,本方法可准确检测被鲁氏耶尔森菌感染的虹鳟样品。研究表明,所建立的qPCR方法具有特异、灵敏、快速、定量的优点,可用于快速诊断虹鳟肠炎红嘴病早期病症及定量检测鲁氏耶尔森菌。     

基于原位LAMP技术的牡蛎疱疹病毒(OsHV-1)易感宿主调查

牡蛎疱疹病毒(Ostreid herpesvirus 1, OsHV-1)给世界双壳贝类养殖业造成了严重的经济损失。10余种双壳贝类陆续被认定为易感宿主,仍有其他几种贝类仅有PCR核酸阳性数据,因确诊证据不足导致其易感性未得到充分评估。原位环介导等温核酸扩增(LAMP)检测技术相对传统原位杂交技术具有灵敏度高、方便快捷、可作为病原微生物感染证据的优点。为了在OsHV-1流行病学调查过程中实现病毒感染的快速检测和确诊,根据已报道的OsHV-1特异性LAMP检测引物,设计内引物,优化反应条件,建立了OsHV-1的原位LAMP检测方法。基于该方法对2019年以来采集的长牡蛎(Crassostrea gigas)、福建牡蛎(Crassostrea angulata)、栉孔扇贝(Chlamys farreri)、虾夷扇贝(Mizuhopecten yessoensis)、毛蚶(Scapharca subcrenata)和菲律宾蛤仔(Ruditapes philippinarum)样本进行检测。结果显示,毛蚶样本的OsHV-1原位LAMP检测结果呈阳性;其他几种贝类部分样本的实时定量PCR (qPCR)检测呈阳性,但原位LAMP检测呈阴性。对毛蚶样本的原位LAMP检测结果分析发现,病毒杂交信号主要分布在外套膜和肝胰腺等器官的结缔组织,推测感染的细胞为成纤维细胞和血淋巴细胞;在闭壳肌和斧足肌肉组织的肌细胞细胞核中也发现较多杂交信号。鳃丝内和周边偶现阳性信号,推测来自渗出的血淋巴细胞。基于原位LAMP技术的OsHV-1检测结果显示,毛蚶是OsHV-1的一种易感宿主,毛蚶结缔组织、肌肉组织和血淋巴细胞对该病毒有强亲嗜性。     

Development of an aquatic pathogen database (AquaPathogen X) and its utilization in tracking emerging fish virus pathogens in North America

The AquaPathogen X database is a template for recording information on individual isolates of aquatic pathogens and is freely available for download (http://wfrc.usgs.gov). This database can accommodate the nucleotide sequence data generated in molecular epidemiological studies along with the myriad of abiotic and biotic traits associated with isolates of various pathogens (e.g. viruses, parasites and bacteria) from multiple aquatic animal host species (e.g. fish, shellfish and shrimp). The cataloguing of isolates from different aquatic pathogens simultaneously is a unique feature to the AquaPathogen X database, which can be used in surveillance of emerging aquatic animal diseases and elucidation of key risk factors associated with pathogen incursions into new water systems. An application of the template database that stores the epidemiological profiles of fish virus isolates, called Fish ViroTrak, was also developed. Exported records for two aquatic rhabdovirus species emerging in North America were used in the implementation of two separate web-accessible databases: the Molecular Epidemiology of Aquatic Pathogens infectious haematopoietic necrosis virus (MEAP-IHNV) database (http://gis.nacse.org/ihnv/) released in 2006 and the MEAP- viral haemorrhagic septicaemia virus (http://gis.nacse.org/vhsv/) database released in 2010.     

Development of monoclonal antibodies for the rapid identification of epizootic Vibrio species

Abstract. A library of monoclonal antibodies has been developed for use in rapid diagnosis of Vibrio infecftions. It covers the Vibrio Species that are regarded as the major fish and shellfish pathogens, many of which are also human pathogens. Blind tests confirm the accurary of the monoclonals as a diagnostic test. Conjugation of enzyme lable onto the monoclonals is providing rapid identification of Vibrio species by use of direct, rather than indirect, immunological testing.     

Recent advances of genome mapping and marker‐assisted selection in aquaculture

Aquaculture is the fastest growing sector in agriculture. Substantial genetic gains have been achieved in a few cultured species using conventional selective breeding approaches. However, the majority of fish and shellfish species remain in their wild state. Due to the recognition of the enormous potential of marker‐assisted selection (MAS) to speed up genetic gain through early selection, aquaculture scientists have constructed linkage maps in over 40 species and mapped quantitative trait loci (QTL) for important traits in over 20 species since the 1990s. Although MAS and genomic selection (GS) have not been widely used in aquaculture, their application in breeding programmes is expected to be a fertile area of research. In this paper, I summarized the recent advances of linkage and QTL mapping, as well as MAS in aquaculture species. I also discussed the potentials of genome‐wide association studies (GWAS) and GS in aquaculture species.