High-throughput screening reveals small molecule modulators inhibitory to Acidovorax citrulli

Acidovorax citrulli is a seed-transmitted gram-negative bacterium that can cause substantial economic yield loss in watermelon and melon production worldwide. Four small-molecule libraries containing 4,952 compounds were selected for high-throughput screening against A. citrulli wild-type strain Xu3-14 by evaluation of growth inhibition. One hundred and twenty-seven molecules (2.5% hit rate) were identified as bactericidal or bacteriostatic against A. citrulli at 100 μM. Secondary screens indicated that 27 candidate compounds were more effective against A. citrulli Group II strains than Group I strains (classified using repetitive element PCR). Several compounds were inhibitory to other pathogenic bacteria, including Clavibacter michiganensis subsp. michiganensis and Xanthomonas campestris pv. campestris, but did not affect the growth of plant beneficial bacteria Pseudomonas fluorescens and Bacillus subtilis. More than half of the compounds did not inhibit germination of Arabidopsis or watermelon seeds. The effect of small molecules on A. citrulli seed-to-seedling transmission was evaluated by applying each compound to inoculated watermelon seeds and assessing seedling infection. Nine compounds were chosen for further investigation based on their reduction of percentage seedling infection and compiling scores on their specificity, sensitivity, and phytotoxicity obtained in the secondary screens. The five best compounds were selected (thiamphenicol, nadifloxacin, pipemidic acid, ciclopirox, and zinc pyrithione) for greenhouse tests and were found to effectively reduce the seed-to-seedling transmission of A. citrulli in both artificially and naturally infested seeds. These top five compounds provide a basis for future development of an A. citrulli-specific bactericide.     

Agriculturally productive yet biodiverse: human benefits and conservation values along a forest-agriculture gradient in Southern Ethiopia

Landscape Ecology - It remains unclear how agricultural landscapes can best serve multiple purposes such as simultaneously maintaining agricultural productivity and conserving biodiversity. Our...     

基于双目立体视觉的重叠柑橘空间定位

果实的精准识别和定位是智能采摘面临的难题之一。基于双目立体视觉，提出了一种针对户外重叠柑橘的三维空间定位方法。首先，从双目左右图像中提取重叠柑橘果实轮廓并进行高斯平滑，通过曲率分析，找出异常的轮廓像素点；其次，依次连接相邻两个异常像素点，分析该线段上的像素点到柑橘轮廓的距离，在相邻两正常线段的交点处完成重叠柑橘轮廓分割，并通过寻找异常线段剔除对应的非柑橘轮廓像素点；再者，采用最小二乘椭圆拟合方法重建柑橘目标轮廓，并获取柑橘的中心；最后，根据双目极线约束和图像相似度，对重叠柑橘中心点进行匹配，并基于视差原理计算柑橘中心的深度值及三维空间坐标，确定重叠柑橘的遮挡关系。户外实验结果表明,所提出的方法定位误差为6.38 mm，满足柑橘采摘机器人户外采摘作业的定位精度要求。     

Histological alterations in gills of shrimp Litopenaeus vannamei in low‐salinity waters under different stocking densities: Potential relationship with nitrogen compounds

Two experimental modules with different stocking densities (M1 = 70 and M2 = 120 shrimp /m²) were examined weekly over a culture cycle in tanks with low‐salinity water (1.9 g/L) and zero water exchange. Results showed survival rates of 87.7 and 11.9% in M1 and M2, respectively. Water temperature, pH, dissolved oxygen, electrical conductivity and chlorophyll a were not significantly (p > .05) different between modules. In contrast, the concentrations of nitrogen compounds were significantly (p < .05) different between modules, except nitrite‐N (M2 were 2.31 ± 1.38 mg/L N‐TAN, 0.18 ± 0.49 mg/L N‐NO₂^? and 6.83 ± 6.52 mg/L N‐NO₃^?; in M1: 0.97 ± 0.73 mg/L N‐TAN, 0.05 ± 0.21 mg/L N‐NO₂^? and 0.63 ± 0.70 mg/L N‐NO₃^?). When waters of both modules reached higher levels of ammonia and nitrite, histological alterations were observed in gills. The histological alterations index (HAI) was higher in M2 (5‐112) than in M1 (2‐22).     

Diversity of root-knot nematodes in Moroccan olive nurseries and orchards: does <Emphasis Type="Italic">Meloidogyne javanica</Emphasis> disperse according to invasion processes?

Background

Root-knot nematodes (RKN) are major pest of olive tree (Olea europaea ssp. europaea), especially in nurseries and high-density orchards. Soil samples were collected from main olive growing areas of Morocco, to characterize Meloidogyne species and to discuss the contribution of biotic and abiotic factors in their spatial distribution.

Results

RKN were found in 159 soil samples out of 305 from nurseries (52.1% occurrence) and in 11 out of 49 soil samples from orchards (23.2% occurrence). Biochemical and molecular characterisation (PAGE esterase and SCAR) revealed the dominance of M. javanica both in nurseries and orchards with minor presence of M. incognita only in nurseries, and M. arenaria in only one nursery. RKN were distributed on aggregated basis. Frequent presence of M. javanica in orchards might have come from nurseries. In contrast, the detection of M. incognita in nurseries alone suggests that this species could not reproduce in orchards because of either the competition with other plant-parasitic nematodes or unfit local habitats. The impact of environmental variables (climate, habitat origin and physicochemical characteristics of the substrates) on the distribution of Meloidogyne species is also discussed.

Conclusion

Olive nurseries in Morocco are not able to guarantee the safety of rooted plants. As a result, olive production systems are exposed to strong RKN invasion risks. Consequently, the use of healthy substrates in nurseries may prevent plant-parasitic nematode induction in orchards.

     

Most fish destined for fishmeal production are food‐grade fish

Marine fisheries target and catch fish both for direct human consumption (DHC) as well as for fishmeal and fish oil, and other products. We derived the fractions used for each for 1950–2010 by fishing country, and thus provide a factual foundation for discussions of the optimal use of fisheries resources. From 1950 to 2010, 27% (~20 million tonnes annually) of globally reconstructed marine fisheries landings were destined for uses other than DHC. Importantly, 90% of fish destined for uses other than DHC are food‐grade or prime food‐grade fish, while fish without a ready market for DHC make up a much smaller proportion. These findings have implications for how we are using fish to feed ourselves or, more appropriately, how we are not using fish to feed ourselves.     

秸秆复合有机酿热物对大棚土壤环境的影响

为解决黑龙江省早春大棚土壤温度低及设施土壤环境恶化问题,以‘千禧’番茄为材料,研究秸秆+牛粪(NGH)、秸秆+马粪(MGH)、秸秆+羊粪(YGH)、单一秸秆(JG),以未进行反应堆技术为对照(CK),对早春大棚‘千禧’番茄土壤温度、土壤理化性状、酶活性及微生物群落结构的影响。结果表明,与对照相比,各处理降低了土壤pH,提高了土壤温度、土壤EC、碱解氮、速效钾、有机质含量及土壤蔗糖酶、脲酶、磷酸酶、过氧化氢酶活性。经过秸秆生物反应堆处理的20 cm土层温度有明显的提升,其中秸秆+羊粪处理在反应启动后提升土壤温度效果最好;秸秆+羊粪(YGH)处理提高了土壤速效磷含量,是对照的2倍;秸秆+羊粪(YGH)处理土壤中4种酶活性均处于最高水平,分别比对照提高了91.9%、220%、18.5%、7.3%。各处理微生物多样性指数均显著高于对照,变化规律一致为秸秆+羊粪(YGH)>秸秆+牛粪(NGH)>秸秆+马粪(MGH)>秸秆(JG)>对照(CK);秸秆+羊粪(YGH)及秸秆+牛粪(NGH)处理对糖类、氨基酸类、酯类、醇类、胺类、酸类6类碳源的利用能力最强,显著高于其他处理和对照。应用主成分分析和聚类分析方法将大棚番茄土壤分为4个等级,秸秆+羊粪(YGH)处理为第一级,秸秆+牛粪(NGH)处理为第二级,秸秆+马粪(MGH)及单一秸秆(JG)处理为第三级,对照(CK)为第四级。应用秸秆复合有机酿热物生物反应堆促进了土壤环境的改善,以秸秆+羊粪(YGH)作为复合有机酿热物效果最佳。     

Transmission ecology of rodent‐borne diseases: New frontiers

Rodents are recognized reservoir hosts for many human zoonotic pathogens. The current trends resulting from anthropocene defaunation suggest that in the future they, along with other small mammals, are likely to become the dominant mammals in almost all human‐modified environments. Recent intricate studies on bat‐borne emerging diseases have highlighted that many gaps exist in our understanding of the zoonotic transmission of rodent‐borne pathogens. This has emphasized the need for scientists interested in rodent‐borne diseases to integrate rodent ecology into their analysis of rodent‐borne pathogen transmission in order to identify in more detail the mechanisms of spillover and chains of transmission. Further studies are required to better understand the true impact of rodent abundance and the importance of pathogen sharing and circulation in multi‐host– multi‐pathogen communities. We also need to explore in more depth the roles of generalist and abundant species as the potential links between pathogen‐sharing, co‐infections and disease transmission.     

Global parasite and Rattus rodent invasions: The consequences for rodent‐borne diseases

We summarize the current knowledge on parasitism‐related invasion processes of the globally invasive Rattus lineages, originating from Asia, and how these invasions have impacted the local epidemiology of rodent‐borne diseases. Parasites play an important role in the invasion processes and successes of their hosts through multiple biological mechanisms such as “parasite release,” “immunocompetence advantage,” “biotic resistance” and “novel weapon.” Parasites may also greatly increase the impact of invasions by spillover of parasites and other pathogens, introduced with invasive hosts, into new hosts, potentially leading to novel emerging diseases. Another potential impact is the ability of the invader to amplify local parasites by spillback. In both cases, local fauna and humans may be exposed to new health risks, which may decrease biodiversity and potentially cause increases in human morbidity and mortality. Here we review the current knowledge on these processes and propose some research priorities.