Pesticide contamination of the upper Elbe River and an adjacent floodplain area

Journal of Soils and Sediments - Pesticide contamination of river waters is a global problem, and therefore, authorities regularly monitor the water quality status. Especially, flood events might...     

The microbial diversity and structure in peatland forest in Indonesia

The microbial community structure and function under forest in tropical peatlands are poorly understood. In this study, we investigated the microbial community structure and diversity in natural peat swamp forest soil, disturbed peat soil and mineral soil in Central Kalimantan, Indonesia, using 454 pyrosequencing. The results showed that the natural peat soil had the greatest fungal species richness (Chao1), which was significantly (p < .05) larger than that in the other two soils. Community structure of both fungi and bacteria in natural peat soil differed significantly from that in the disturbed peat soil (p = .039 and p = .045, respectively). Ascomycota (40.5%) was the most abundant phylum across the three soils followed by Basidiomycota (18.8%), Zygomycota (<0.1%) and Glomeromycota (<0.1%). The linear discriminant analysis with effect size (LEfSe) showed that Ascomycota (p < .05) and genus Gliocephalotrichum (p < .05) dominated in natural peat soil. Functionally, pathotrophs were more abundant in disturbed peat soil (p < .05). Proteobacteria (43.8%) were the most abundant phylum followed by Acidobacteria (32.6%), Actinobacteria (9.8%), Planctomycetes (1.7%). Methylocystis, Telmatospirillum, Syntrophobacter, Sorangium and Opitutus were the more abundant genera in disturbed peat soil, whereas Nevskia and Schlesneria were more abundant in mineral soil and natural peat soil, respectively. The natural peat forest soil supported a more diverse microbiology; however, the land use of such a soil can change its microbial community structure. The results provide evidence that the disturbance of tropical peat land could lead to the introduction and spread of a large number of fungal diseases     

Effects of Water Hardness and Calcium: Magnesium Ratios on Reproductive Performance and Offspring Quality of Macrobrachium rosenbergii

This study evaluated the effect of specific calcium and magnesium ratios at two hardness values on reproductive performance and offspring quality of Macrobrachium rosenbergii brood‐females. Hatchery water containing 110.5 mg/L CaCO3 hardness was considered baseline as it has been used successfully to hatch and rear larvae and was used as the control treatment. At each hardness value of 150 and 190 mg/L CaCO₃, four experimental water treatments were made in triplicate. Each treatment was adjusted using soluble salts (CaCl₂·H₂O, MgSO₄·7H₂O, and MgCl₂·6H₂O) to provide the hardness and calcium to magnesium ratios of 0:20, 20:80, 50:50, and 80:20 needed. Each of the experimental tanks (140 L) were stocked with six females and one male. The results indicated that both hardness and Ca:Mg ratios affect brood‐female reproductive qualitative parameters such as intermolt period, egg hatchability, egg dry weight, and egg‐clutch somatic index (ESI) parameters (P < 0.05) but not fecundity and eggs per spawn. The results revealed that brood‐females at 150 mg/L hardness showed greater reproductive performance than at 190 and 110.5 mg/L hardness. The findings also demonstrated that the treatment 50Ca50Mg at 150 mg/L hardness with 38.8 mg/L calcium and 12.9 mg/L magnesium had optimum reproductive performance and offspring quality for M. rosenbergii brood‐females.     

High‐throughput Cryopreservation of Sperm from Sex‐reversed Southern Flounder,Paralichthys lethostigma

The Southern flounder, Paralichthys lethostigma, is a valuable aquaculture fish with established markets in the USA. All‐female production in this species is an important technology for aquaculture because the females usually have body sizes twice those of males at the same age, and sex‐reversed males (genotypic XX neomales) are used for all‐female production by crossing with genetically normal females. However, sperm volume from the neomales is usually small (<0.5 mL) and limits their application for all‐female fish production. Cryopreservation of sperm from these sex‐reversed neomales will provide access on demand with increased efficiency to extend the application of neomales. The goal of this study was to develop a protocol for cryopreservation of sperm from the Southern flounder by using an automated high‐throughput processing system. The objectives were to: (1) determine the effect of osmolality on activation of sperm motility; (2) evaluate the effect of extender solutions on sperm motility capacity; (3) evaluate the acute toxicity of cryoprotectants (dimethyl sulfoxide [DMSO], propylene glycol, and polyethylene glycol) on sperm motility, and (4) estimate the effect of cooling rate on sperm cryopreservation and post‐thaw fertilization. Sperm motility was activated when osmolality was 400 mOsmol/kg or higher. Of the three extender buffers tested, HEPES4‐(2‐hydroxyethyl)‐1‐piperazineethanesulfonic acid (HEPES) at 300 mOsmol/kg resulted in better protection for sperm motility than did Hanks' balanced salt solution and Mounib solution at 300 mOsmol/kg during 7 d of refrigerated storage. After 30 min equilibration with the cryoprotectant of 15% DMSO, sperm motility was 24 ± 21% (fresh sperm motility without any cryoprotectants was 42%). After cooling at a rate of 20 C/min, post‐thaw sperm motility was 8 ± 5% and fertilization was 63 ± 40% evaluated at the 32–64 cell stage (5 × 10⁵ sperm per egg). Overall, a protocol was developed for sperm cryopreservation in the Southern flounder with high‐throughput processing, which provides a tool to preserve the valuable genetic resources from neomale flounders, and enables germplasm repository development for the Southern flounder.     

Genetic control of irregular striping, a new phenotype in Cucurbita pepo

Longitudinal striping of the fruit exterioris a common trait in Cucurbita pepo(pumpkin, squash, gourd). Striping occursas ten pairs of alternating dark and lightstripes that are regularly situated inaccordance with the ten sub-epidermalcarpellary vein tracts. Usually, the darkstripes occur in the central areas betweenthe vein tracts, with the light stripesoccupying the remainder of the fruitsurface. A new phenotype is described inwhich dark spots or streaks occur in thecentral areas between the vein tracts;these are usually accompanied by darkstreaks or stripes that occur adjacent toand over part or all of the length of someor all of the ten carpellary vein tracts. The inheritance of this irregular stripingpattern was studied by crossing anaccession that bred true for this phenotypewith a near-isogenic line havinglight-colored fruits. The resultsindicated that irregular striping isdominant to light coloration and isconferred by a single gene. Testcrossesfor allelism with regular striping wereprepared by crossing the irregularlystriped accession with near-isogenic lineshaving broad stripes, l-1 ^BSt/l-1 ^BSt, and narrowstripes, l-1 ^St/l-1 ^St. The testcross results revealed thatirregular striping is conferred by anallele at the l-1 locus, designatedl-1 ^iSt. The l-1 ^iStallele is dominant to light-colored (l-1), recessive to dark-colored (L-1), and can be co-dominant or recessiveto broad-striped (l-1 ^BSt) andnarrow-striped (l-1 ^St),depending on whether or not it is fullyexpressed. Dominance relationships at thel-1 locus can, therefore, berepresented as L-1 > (l-1 ^BSt > l-1 ^St) l-1 ^iSt > l-1.     

In vitro regeneration of Pacific silver fir (Abies amabilis) plantlets and histological analysis of shoot formation

A protocol is described for the in vitro propagation of Abies amabilis (Dougl.) Forbes. Over 60% of the cotyledonary explants from 5-day-old cotyledons formed shoots when cultured for 7 days on Schenk and Hildebrandt's (SH) medium containing 10 micro M N(6)-benzyladenine (BA) followed by another 7 days on SH medium containing 10 micro M each of BA and zeatin. Shoot multiplication was unsuccessful. Seventeen percent rooting was obtained after pulsing for 4 h in 1 mM indole-3-butyric acid and planting pulsed shoots in 1/1 (v/v) perlite/vermiculite. Cell clusters (promeristemoids) of five to seven cells were observed on the cotyledonary explants after 7 days of culture in the presence of cytokinin. These cells developed further into meristematic domes and apical meristems. In the absence of cytokinin, stomata and resin canals reached maturity, whereas cells within the cortex became vacuolated and developed into palisade and spongy mesophyll.     

In vitro plantlet formation from embryonic explants of eastern white cedar (Thuja occidentalis L.)

A protocol is described for the in vitro production of plantlets from embryonic explants of eastern white cedar (Thuja occidentalis L.). Bud induction was optimal when embryonic explants were cultured for 20-25 days on half-strength Quoirin and Le Poivre mineral salts containing equimolar concentrations (10(-6) M) of N(6)-benzyladenine and 2-isopentyl adenine. Bud development was achieved in phytohormone-free medium in the presence of activated charcoal. Maximal shoot elongation occurred on half-strength Quoirin and Le Poivre salts, whereas shoot multiplication was optimal on half-strength Bornman's MCM salts in the presence of cytokinin. Hardened shoots, dipped in commercial rooting powder containing indole-3-butyric acid, rooted optimally in mist under non-sterile greenhouse conditions. Both rooting and subsequent plantlet growth was best when Redi-Earth((R)) was used as a substrate. Over 250 plantlets per embryo can be produced annually by this technique.     

Bridging process-based and empirical approaches to modeling tree growth

The gulf between process-based and empirical approaches to modeling tree growth may be bridged, in part, by the use of a common model. To this end, we have formulated a process-based model of tree growth that can be fitted and applied in an empirical mode. The growth model is grounded in pipe model theory and an optimal control model of crown development. Together, the pipe model and the optimal control model provide a framework for expressing the components of tree biomass in terms of three standard inventory variables: tree height, crown height and stem cross-sectional area. Growth rates of the inventory variables and the components of biomass are formulated from a carbon balance. Fundamentally, the parameters of the model comprise physiological rates and morphological ratios. In principle, the values of these parameters may be estimated by lower-level process models. Alternatively, the physiological and morphological parameters combine, under reasonable assumptions, into a set of aggregate parameters, whose values can be estimated from inventory data with a statistical fitting procedure.     

Efficiency of early selection for rotation-aged wood quality traits in radiata pine

A total of 360 bark-to-bark-through-pith wood strips were sampled at breast height from 180 trees in 30 open-pollinated families from two rotation-aged genetic trials to study inheritance, age-age genetic correlation, and early selection efficiency for wood quality traits in radiata pine. Wood strips were evaluated by SilviScan® and annual pattern and genetic parameters for growth, wood density, microfibril angle (MFA), and stiffness (modulus of elasticity: MOE) for early to rotation ages were estimated. Annual ring growth was the largest between ages 2–5 years from pith, and decreased linearly to ages 9–10. Annual growth was similar and consistent at later ages. Wood density was the lowest near the pith, increased steadily to age 11–15 years, then was relatively stable after these ages. MFA was highest (35°) near the pith and reduced to about 10° at age 10–15 years. MFA was almost unchanged at later ages. MOE increased from about 2.5 GPa near the pith to about 20 GPa at ages 11–15 years. MOE was relatively unchanged at later ages. Wood density and MOE were inversely related to MFA. Heritability increased from zero near the pith and stabilised at ages 4 or 5 for all four growth and wood quality traits (DBH, density, MFA and MOE). Across age classes, heritability was the highest for area-weighted density and MFA, lowest for DBH, and intermediate for MOE. Age-age genetic correlations were high for the four traits studied. The genetic correlation reached 0.8 after age 7 for most traits. Early selection for density, MFA and MOE were very effective. Selection at age 7–8 has similar effectiveness as selection conducted at rotation age for MFA and MOE and at least 80% effective for wood density.