Effect of LDPE microplastics on chemical properties and microbial communities in soil

The accumulation of plastics in the soil ecosystem poses an increasing environmental concern worldwide. However, little is known about the effect of plastic concentrations on soil properties and soil biota. In this study, we investigated the effect of low-density polyethylene (LDPE) microplastics (MPs) on the chemical and microbial properties of agricultural soil using a set of microcosm experiments. The soil was incubated for 100 days with LDPE at concentrations of 0%, 0.1%, 1%, 3%, 5%, and 7% at 25°C with 70% water-holding capacity. Along with soil chemical analysis, we conducted an analysis of soil microbial properties on the first day and again after 100 days of incubation. LDPE concentrations of ≥1% significantly (p < .05) decreased the pH but increased the electrical conductivity of the soil in comparison with the control (0% LDPE at 100 days). Increasing the LDPE concentration did not affect the soil exchangeable cation content or the available Pb concentration. Firmicutes were the most abundant phyla in the soil on the first day, whereas Proteobacteria, Firmicutes and Actinobacteria became dominant in all treatments after 100 days. An increasing LDPE concentration increased the abundance of Actinobacteria and decreased Proteobacteria. Principal component analysis demonstrated that only 7% LDPE was positively correlated with Actinobacteria, indicating that higher concentrations of LDPE contributed to the growth of this phylum. The findings of this study imply that MP contamination could affect soil chemical properties and microbial activity and that these effects primarily depend on MP concentrations in soil.     

Differences in the activity and bacterial community structure of drained grassland and forest peat soils

The microbial activity and bacterial community structure were investigated in two types of peat soil in a temperate marsh. The first, a drained grassland fen soil, has a neutral pH with partially degraded peat in the upper oxic soil horizons (16% soil organic carbon). The second, a bog soil, was sampled in a swampy forest and has a very high soil organic carbon content (45%), a low pH (4.5), and has occasional anoxic conditions in the upper soil horizons due to the high water table level. The microbial activity in the two soils was measured as the basal and substrate-induced respiration (SIR). Unexpectedly, the SIR (μl CO₂ g⁻¹ dry soil) was higher in the bog than in the fen soil, but lower when CO₂ production was expressed per volume of soil. This may be explained by the notable difference in the bulk densities of the two soils. The bacterial communities were assessed by terminal restriction fragment length polymorphism (T-RFLP) profiling of 16S rRNA genes and indicated differences between the two soils. The differences were determined by the soil characteristics rather than the season in which the soil was sampled. The 16S rRNA gene libraries, constructed from the two soils, revealed high proportions of sequences assigned to the Acidobacteria phylum. Each library contained a distinct set of phylogenetic subgroups of this important group of bacteria.     

三氯异氰尿酸对马铃薯连作障碍土壤微生物群落组成的影响

采用盆栽试验，选择三氯异氰尿酸(TCCA)为土壤消毒剂，研究不同施用量TCCA对马铃薯连作障碍土壤微生物群落组成的影响。TCCA施用量设置分别为：0(CK)，30 kg/hm²(S₃₀)，60 kg/hm²(S₆₀)和120 kg/hm²(S₁₂₀)。结果表明：与CK处理相比，S₆₀和S₁₂₀处理显著提高土壤pH(P<0.05)，分别提高0.15个和0.26个单位；显著增加土壤可溶性有机碳含量 (P<0.05)，增幅分别为30.4% 和83.5%；显著提高土壤铵态氮含量(P<0.05)，分别提高3.3倍和9.7倍。同时，S₆₀和S₁₂₀处理显著影响了土壤微生物优势菌属的相对丰度(P<0.05)。与CK处理相比，在门水平上，S₆₀和S₁₂₀处理下土壤变形菌门(Proteobacteria)的增幅达55.3% 和85.9%，子囊菌门(Ascomycota)的增幅达16.7% 和35.1%；在属水平上，S₆₀和S₁₂₀处理下显著降低马铃薯致病菌链霉菌属(Streptomyces)的相对丰度(P<0.05)，降幅达35.7% 和57.1%。主坐标(PCoA)分析表明，S₆₀和S₁₂₀处理与CK处理的细菌和真菌的群落结构截然不同。除了TCCA直接杀菌的影响，冗余分析(RDA)显示，土壤pH和铵态氮含量亦是影响微生物群落组成变化的关键因子。     

Parent material and vegetation influence bacterial community structure and nitrogen functional genes along deep tropical soil profiles at the Luquillo Critical Zone Observatory

Microbial communities mediate every step of the soil nitrogen cycle, yet the structure and associated nitrogen cycle functions of soil microbial communities remain poorly studied in tropical forests. Moreover, tropical forest soils are often many meters deep, but most studies of microbial nitrogen cycling have focused exclusively on surface soils. The objective of our study was to evaluate changes in bacterial community structure and nitrogen functional genes with depth in soils developed on two contrasting geological parent materials and two forest types that occur at different elevations at the Luquillo Critical Zone Observatory in northeast Puerto Rico. We excavated three soil pits to 140 cm at four different sites representing the four soil × forest combinations (n = 12), and collected samples at ten-centimeter increments from the surface to 140 cm. We used bacterial 16S rRNA gene-DGGE (denaturant gradient gel electrophoresis) to fingerprint microbial community structures, and quantitative PCR to measure the abundance of five functional genes involved in various soil nitrogen transformations: nifH (nitrogen fixation), chiA (organic nitrogen decomposition), amoA (ammonia oxidation), nirS (nitrite reduction) and nosZ (nitrous oxide reduction). Multivariate analyses of DGGE fingerprinting patterns revealed differences in bacterial community structure across the four soil × forest types that were strongly correlated with soil pH (r = 0.69, P < 0.01) and nutrient stoichiometry (r² ≥ 0.36, P < 0.05). Across all soil and forest types, nitrogen functional genes declined significantly with soil depth (P < 0.001). Denitrification genes (nirS and nosZ) accounted for the largest proportion of measured nitrogen functional genes. Measured nitrogen functional genes were positively correlated with soil carbon, nitrogen and phosphorus concentrations (P < 0.001) and all genes except amoA were significantly more abundant in the Inceptisol soil type compared with the Oxisol soil type (P < 0.03). Greater abundances and a stronger vertical zonation of nitrogen functional genes in Inceptisols suggest more dynamic nitrogen transformation processes in this soil type. As the first study to examine bacterial nitrogen functional gene abundances below the surface 20 cm in tropical forest soils, our work provides insight into how pedogenically-driven vertical gradients control the nitrogen-cycling capacity of soil microbial communities. While previous studies have shown evidence for redox-driven hotspots in tropical nitrogen cycling on a watershed scale, our study corroborates this finding on a molecular scale.     

Bacterial diversity and community structure along different peat soils in boreal forest

Bacteria in peat forest soil play important role in global carbon cycling. The distribution of bacteria population in different peat soils as a whole and how forest management practices alter the bacterial populations are still poorly known. Using pyrosequencing analysis of 16S rRNA gene, we quantified the diversity and community structure of bacteria in eight peat forest soils (pristine and drained) and two mineral forest soils from Lakkasuo, Finland with either spruce-dominant or pine-dominant tree species. In total, 191,229 sequences which ranged from 15,710 to 22,730 per sample were obtained and affiliated to 13 phyla, 30 classes and 155 genera. The peat forest soils showed high bacterial diversity and species richness. The tree species seems to have more strong impact on the bacterial diversity than the type of peat soil, which drives the changes in bacterial community structure. The dominant taxonomic groups across all soils (>1% of all sequences) were Proteobacteria, Acidobacteria, Actinobacteria, Bacteroidetes, Planctomycetes and Verrucomicrobia. The relative abundance of bacteria phylum and genus differed between soil types and between vegetation. Significant differences in relative abundance of bacteria phyla were only found for Gemmatimonadetes and Cyanobacteria between the pristine and the drained peat forest soils. At genus level, the relative abundance of several genera differed significantly between the peat soils with same or different tree species, including Burkholderia, Caulobacter, Opitutus, Mucilanginibacter, Acidocella, Mycobacterium, Bradyrhizobium, Dyella and Rhodanobacter.     

Carbon addition reduces labile soil phosphorus by increasing microbial biomass phosphorus in intensive agricultural systems

Accumulation of inorganic and labile organic phosphorus (P) in intensive agricultural systems leads to P loss from soil which can cause serious environmental problems. Soil microbes are important in mobilizing soil non-available P, however, little is known about the role of soil microbes in immobilizing P to reduce P loss. Here, we test whether stimulating microbial biomass to immobilize P could reduce the amount of labile P available for leaching. The distribution characteristics of Olsen P, organic P and microbial biomass P were determined in three intensive agricultural systems. In addition, we conducted a pot experiment with three P and four carbon (C) levels. CaCl₂ extractable P was measured and used to indicate the risk of P leaching. We found that there was a positive relationship between soil organic C and microbial biomass P. Carbon addition drove the process of P immobilization and reduced CaCl₂ extractable P. Microbial biomass P increased by 64% (p < .05) with the addition of C, and Olsen P and CaCl₂ extractable P decreased by 28% and 17%, respectively. Our results show that C addition increased microbial immobilization of P and reduced forms of labile P susceptible to leaching. Stimulating microbes to immobilize P by adding C to soils may have the potential to reduce P loss from intensive agricultural systems, reducing their environmental impact.     

Mycorrhizal colonization associated with roots of field-grown maize does not decline with increasing plant-available phosphorus

Maize roots are colonized by arbuscular mycorrhizal fungi, but less mycorrhizal symbiosis is expected as the plant-available phosphorus (P) concentration of soil increases, based on greenhouse and growth bench experiments. The objective of this study was to evaluate maize root colonization by arbuscular mycorrhizal fungi in a sandy loam soil with a gradient of plant-available P concentrations resulting from P fertilizer inputs. The field experiment received inorganic and organic P fertilizers for 3 years, and this created a 20-fold difference in the plant-available P concentration, from 12 to 204 mg Mehlich-3 extractable P kg⁻¹. The proportion of maize roots colonized with arbuscular mycorrhizal fungi increased from 26 ± 2% during vegetative growth (V8 and VT growth stages) to 46 ± 2% in the reproductive R2 and R6 stages. The P fertilizer input did not affect maize root colonization by arbuscular mycorrhizal fungi. More arbuscular mycorrhizal fungi colonization of maize roots occurred in soil with increasing plant-available P concentrations (r = .12, p = .05, n = 237), and this was associated with greater P uptake in the maize shoots (r = .53, p < .001, n = 240). We conclude that the root-mycorrhizal symbiosis was more strongly related to maize growth than the plant-available P concentration under field conditions.     

Effects of phosphorus addition on soil microbial biomass and community composition in three forest types in tropical China

Elevated nitrogen (N) deposition in humid tropical regions may aggravate phosphorus (P) deficiency in forest on old weathered soil found in these regions. From January 2007 to August 2009, we studied the responses of soil microbial biomass and community composition to P addition (in two monthly portions at level of 15 g P m^?2 yr^?1) in three tropical forests in southern China. The forests were an old-growth forest and two disturbed forests (mixed species and pine dominated). The objective was to test the hypothesis that P addition would increase microbial biomass and change the composition of the microbial community, and that the old-growth forests would be more sensitive to P addition due to its higher soil N availability. Microbial biomass C (MBC) was estimated twice a year and the microbial community structure was quantified by phospholipid fatty acid (PLFA) analysis at the end of the experiment. Addition of P significantly increased the microbial biomass and altered the microbial community composition in the old-growth forest, suggesting that P availability is one of the limiting factors for microbial growth. This was also reflected by significant increases in soil respiration after P addition. In contrast, P addition had no effect on the microbial biomass and the microbial community composition in the pine forests. Also in the mixed forest, the microbial biomass did not significantly respond to P addition, but soil respiration and the ratio of fungal-to-bacteria was significantly increased.     

The influence of different types of urban land use on soil microbial biomass and functional diversity in Beijing,China

Soil microbes in urban ecosystems are affected by a variety of abiotic and biotic factors resulting from changes in land use. However, the influence of different types of land use on soil microbial properties and soil quality in urban areas remains largely unknown. Here, by comparing five types of land use: natural forest, park, agriculture, street green and roadside trees, we examined the effects of different land uses on soil microbial biomass and microbial functional diversity in Beijing, China. We found that soil properties varied with land uses in urban environments. Compared to natural forest, soil nutrients under the other four types of urban land use were markedly depleted, and accumulation of Cu, Zn, Pb and Cd was apparent. Importantly, under these four types of land use, there was less microbial biomass, but it had greater functional diversity, particularly in the roadside‐tree soils. Furthermore, there were significant correlations between the microbial characteristics and physicochemical properties, such as organic matter, total nitrogen and total phosphorus (P < 0.05), suggesting that lack of nutrients was the major reason for the decrease in microbial biomass. In addition, the larger C/N ratio, Ni concentration and pool of organic matter together with a higher pH contributed to the increase in microbial functional diversity in urban soils. We concluded that different land uses have indirect effects on soil microbial biomass and microbial community functional diversity through their influence on soil physicochemical properties, especially nutrient availability and heavy metal content.     

Foliage application of nitrogen has less influence on soil microbial biomass and community composition than soil application of nitrogen

Purpose

Many studies have shown the simulated effects of nitrogen (N) deposition on soil microbial community composition by adding N directly to the forest floor but have ignored the N retention process by the canopy. This study was conducted to compare the responses of soil microbial biomass and community composition between soil application of N (SAN) and foliage application of N (FAN).

Materials and methods

A pot experiment was designed with (1) two N application methods (SAN and FAN), (2) three N application levels (5.6, 15.6 and 20.6 g N m^?2 year^?1), and (3) two tree species (Schima superba Gardn. et Champ. and Pinus massoniana Lamb.) following a nested factorial design. Soil microbial biomass and community composition were determined using phospholipid fatty acids (PLFAs) techniques after 1 and 1.5 years of treatments.

Results and discussion

Nitrogen addition increased (P?<?0.05) soil NH₄⁺-N content and soil NO₃^?-N content and decreased (P?<?0.05) soil pH and soil microbial (bacterial, fungal, and actinomycete) biomass for both N application methods. Compared with the SAN treatment, the FAN treatment had higher (P?<?0.05) pH and lower (P?<?0.05) contents of soil NH₄⁺-N and soil NO₃^?-N. Soil microbial biomass and community composition were significantly different between the different N addition levels under the SAN treatment, but they showed no significant difference (P?<?0.05) between the different N addition levels under the FAN treatment. The soil microbial biomass in the S. superba soil was higher (P?<?0.05) than that in the P. massoniana soil for the FAN treatment, with the opposite trend observed under the SAN treatment. Moreover, redundancy analysis showed that soil microorganisms were significantly correlated with soil pH, soil water content, NH₄⁺-N, and NO₃^?-N.

Conclusions

The results showed that N addition affected soil properties, microbial biomass, and the composition of microbial communities; however, the FAN treatment had less influence on soil properties and soil microorganisms than did the SAN treatment over short time scales, and the extent of this effect was different between coniferous and broadleaf trees.

     

Forest floor microbial communities in relation to stand composition and timber harvesting in northern Alberta

With the growing interest in silvicultural techniques that more closely emulate natural disturbance regimes, there is a need to better understand how partial harvesting affects the soil microbial community in stands with varying ecological characteristics, e.g., tree species composition. Four and a half and 5.5 years post-harvest, we used phospholipid fatty acid (PLFA) and substrate-induced respiration (SIR) analyses to compare the microbial biomass and microbial community structure of forest floors from stands dominated by white spruce (Picea glauca; SPRUCE) or by trembling aspen (Populus tremuloides; ASPEN) and from mixed-species (MIXED) stands in northern Alberta, Canada, that had been clearcut, partial-cut with 20% retention, partial-cut with 50% retention or left uncut (controls). PLFA and SIR analyses revealed that ASPEN forest floors supported a larger microbial biomass with a very different community structure than MIXED or SPRUCE forest floors. The microbial community structure of these soils appeared to be strongly affected by the presence of white spruce and the composition of the understory vegetation. There were no effects of timber harvesting detected within or across stand types on any of the variables measured, with the exception of the PLFA 16:1ω5, which was relatively more abundant in the clearcuts and 50% retention treatments than in the uncut controls, perhaps in response to an increased forest floor pH and grass cover in the disturbed areas. The resilience to timber harvesting of the forest floors from these stands may be the result of efforts to minimize soil disturbance during harvesting and to allow vegetation to regenerate naturally. From the perspective of the forest floor microbial community, partial harvesting does not appear to have any benefit over clearcut harvesting at these boreal forest sites.     

Examining soil organic carbon in the mountainous peat swamps of the Zoigê Plateau in China's Qinghai-Tibet Plateau

Mountainous peatlands are one of the most important terrestrial ecosystems for carbon storage and play an important role in the global carbon cycle. An insight into the carbon cycle of peat swamps located in mountainous regions can be obtained by studying the distribution of soil organic carbon (SOC) and its relationships with environmental factors. This study focused on the development conditions of peat swamps in the Gahai wetlands, located on the Zoigê Plateau, China, with four different altitudinal gradients as experimental sample sites. The distribution of SOC and its relationship with environmental factors were analysed through vegetation surveys and a generalized additive model (GAM). The results show that with increasing altitude, soil temperature decreased while the soil pH and bulk density initially decreased then increased. On the contrary, the topographic wetness index (TWI), SOC content, above-ground biomass and litter count initially increased then decreased. The SOC content of the 0–30 cm soil layer was in the range 226–330 g·kg⁻¹ (coefficient of variation (CV) = 21.4%), and the 30–60 cm layer was 178–257 g·kg⁻¹ (CV = 17.5%) and was significantly correlated (p < .05) with above-ground biomass and litter count. Meanwhile, the SOC content in the 60–90 cm soil layer was in the range 132–167 g·kg⁻¹ (CV = 9.2%) with a significant correlation (p < .05) with soil temperature, pH, bulk density and topographic moisture index. The study showed that the SOC content exhibited more pronounced spatial patterns with increasing altitude, with the peak value in the shallow soil layer appearing in lower elevation areas compared with the deep soil layer. The level of variation changed from medium to low, reflecting the stable mechanism for maintaining SOC within the heterogeneous peat swamp environment.     

基于高通量测序研究猕猴桃苗不同生育期根际真菌群落结构及多样性

为探究猕猴桃苗不同生长期与根际土壤真菌群落结构、多样性及土壤养分之间的相互关系,利用Illumina MiSeq高通量测序研究猕猴桃苗3个不同生长阶段(生长前期、速生期、生长后期)根际微生物群落结构组成及其多样性,运用CANOCO和R语言软件对土壤真菌群落与土壤环境因子间关系进行RDA和相关性分析。结果表明:猕猴桃苗不同生长期土壤性质均存在显著差异,随着猕猴桃苗根系不断生长,土壤p H、速效氮、有效磷出现先升高后降低趋势,速效钾则出现先降低后升高;高通量测序共得到1776个真菌OTUs,分属于10门22纲151科157属;方差分析表明各生长时期多样性指数(Shannon)差异显著;序列分析发现,子囊菌门(Ascomycota,丰度72.69%)、被孢霉门(Mortierellomycota,18.80%)、罗兹菌门(Rozellomycota,6.68%)、担子菌门(Basidiomycota,4.28%)和球囊菌门(Glomeromycota,1.45%)是猕猴桃苗不同生长期的优势菌门(丰度大于1%的视为优势菌门);对不同生长时期优势菌门所占比例进行分析,发现子囊菌门出现先升高后降低,被孢霉门、罗兹菌门和担子菌门则出现先降低后升高,球囊菌门相对丰度随着猕猴桃根系生长逐渐升高;RDA分析结果显示,有效磷和pH与子囊菌门显著正相关,速效钾与子囊菌门显著负相关,有机碳与壶菌门(Chytridiomycota)显著负相关。综上,猕猴桃苗在不同生长时期根际土壤真菌群落结构不同,速生期根际真菌种群最丰富,生长后期最少;子囊菌门、被孢霉门、罗兹菌门和担子菌门始终是猕猴桃苗生长期根际优势菌群;根际真菌群落组成和土壤养分变化受猕猴桃苗不同生长时期的影响,其中土壤有效磷和速效钾是影响子囊菌门群落组成的重要因子。     

Wetland-type conversion drives the C,N and P stoichiometry change of soil in river plain of lower of the Yellow River

Land use conversion on river plain has profound impacts on soil characteristics and elemental stoichiometry. Four wetland types (Riparian lower-beach wetland [RLW], Riparian higher-beach wetland [RHW], Cultivated wetland [CW] and Mesophytic wetland [MW]) were selected in the lower Yellow River area to investigate the consequence of wetland type conversion on soil carbon (C), nitrogen (N) and phosphorus (P) stoichiometry. The results demonstrated that wetland conversion induced significant spatio-temporal variations in soil C, N and P stoichiometry and physicochemical characteristics in soil. Frequent agricultural activities (fertilizer input) raised the nutrient content of natural wetland, particularly in surface soil (0–30 cm). Soil volumetric water content (VWC), soil bulk density (SBD), pH and soil enzyme activity varied significantly in different wetlands. Total carbon (TC) and total nitrogen (TN) contents in MW decreased with increasing soil depth (<40 cm layers), as did TN and total phosphorus (TP) contents in CW. On the other hand, TC, TN and TP contents in RLW and RHW did not change significantly with soil depth. However, the contents of TOC, ${\mathrm{NO}}_3^{-}–\mathrm{N}$ and Fe/Al-P, etc., varied among soil layers and among wetland types. Furthermore, the stoichiometric characteristics changed significantly in some soil layers, with mean values being less than the Chinese average. Statistically, significant positive correlations were determined between TC and TN (r = .56), TDC and TP (r = .62), N:P and pH (r = .57) (p < .05) and ${\mathrm{NO}}_3^{-}–\mathrm{N}$ and pH (r = .66, p < .01). VWC was negatively correlated with pH (r = −.56, p < .05), while C/P was negatively associated with soil temperature (ST) and SBD (r = −.55, r = −.64, p < .05). TDC, IP, TN, Fe/Al-P and ST were identified as the dominant factors, with the percentage of variance 41%, 20%, 12%, 9% and 6% respectively. These findings have a great scientific significance for the ecological conservation of wetlands in the lower Yellow River area.     

Effects of microbial inoculants on phosphorus and potassium availability,bacterial community composition,and chili pepper growth in a calcareous soil: a greenhouse study

Purpose

Phosphorus (P) and potassium (K) are two important essential nutrient elements for plant growth and development but their availability is often limited in calcareous soils. The objective of this study was to determine the effects of applying microbial inoculants (MI, containing effective strains of Bacillus megaterium and Bacillus mucilaginous) on the availability of P and K, plant growth, and the bacterial community in calcareous soil.

Materials and methods

A greenhouse experiment was conducted to explore the effects of the addition of MI (control: without MI addition; treatment: with MI addition at the rate of 60 L ha^?1) on the concentrations of P and K in soil and plant, soil bacterial community diversity and composition, and chili pepper (Capsicum annuum L.) growth.

Results and discussion

The results showed that MI inoculation significantly increased the fruit yields by 28.5% (p?<?0.01), available P and K in the rhizosphere soil by 32.1% and 28.1% (p?<?0.05), and P and K accumulation in the whole plants by 40.9% and 40.2%, respectively (p?<?0.05). Moreover, high-throughput sequencing revealed that Proteobacteria, Acidobacteria, Bacteroidetes, Chloroflexi, and Gemmatimonadetes were the dominant phyla of soil bacteria. MI application did not significantly impact the diversity and composition of soil bacterial communities, but increased relative abundances of bacterial genera Flavobacterium responsible for promoting root development across growing stages (p?<?0.05), and changed the soil bacterial community structure associated closely with soil properties of available P, K, and pH in soil.

Conclusions

The application of MI improved the bioavailability of P and K and plant growth due to its impact on the soil bacterial community structure.

     

Soil organic matter in soil physical fractions in adjacent semi-natural and cultivated stands in temperate Atlantic forests

Changes from natural tree species to rapidly growing exotic species as well as intensification of forestry operations with heavy machinery can lead to changes in the quantity and quality of organic matter inputs to soil and to disruption of soil physical structure. These two ecosystem properties are tightly linked to organic matter dynamics. Five adjacent forest stands were selected to study soil organic matter dynamics in soil physical fractions. On one hand, two semi-natural broadleaved forests (Quercus robur, Fagus sylvatica) and an adult radiata pine plantation (40-year-old,) in order to study the effect of species change on these parameters, and on the other, a chronosequence of Pinus radiata plantations (40-year-old; 3-year-old; 16-year-old), to study the effect of mechanization during harvesting and intense site preparation. Samples of intact topsoil (0-5 cm) were collected and aggregate-size distribution, mean weight diameter (MWD), total C and N, particulate organic matter (POM)-C, POM-N and microbial biomass-C were determined in each aggregate size fraction. Microbial respiration and nitrogen mineralization were also assessed in each aggregate size fraction, during a 28 day incubation period.Losses of POM-C and POM-N in the bulk soil due to mechanical site preparation were high relative to total soil C and N, which suggests that POM is a sensitive parameter to the effect of mechanization. The ratio C-POM:SOM was significantly related to MWD (R² = 0.75, P < 0.001) reflecting that POM may play a key role in the topsoil aggregate formation in these stands. Semi-natural stands had a higher proportion of macroaggregates (0.25-2 mm) than the cultivated adult one. Megaaggregates (>2 mm) were the most abundant class in mature stands (82-92%), whereas macro- and microaggregates (<2 mm) were the most abundant ones in the intensely soil prepared P. radiata plantation (49%).Indicators for sustainable forest management related to soil organic matter should not only be assessed in terms of total C stocks but also with respect to sensitive organic matter and its degradability in different size classes.     

CO<Subscript>2</Subscript> Emission and Organic Carbon Pools in Soils of the Northern Taiga Ecosystems of Western Siberia under Different Geocryological Conditions

Statistical analysis of a vast body of data collected during five field seasons (2011–2015) was performed to characterize the biological activity of soils in the northern taiga ecosystems of Western Siberia. Automorphic forest soils, hydromorphic (oligotrophic bog) soils, and semihydromorphic (flat-topped and large peat mounds) soils were characterized. Statistically significant differences of average levels of CO₂ emission from the soils were identified at the ecosystem level. The CO₂ emission from podzols of automorphic forest ecosystems at the peak of the growing season (205 ± 30 to 410 ± 40 mg CO₂/(m² h)) was significantly higher than the emission from semihydromorphic soils of peat mounds (70 ± 20 to 116 ± 10 mg CO₂/(m² h)). The presence and depth of permafrost was a significant factor that affected ecosystem diversity and biological activity of northern taiga soils. Statistically significant differences in the total, labile, and microbial carbon pools were observed for the studied soils. Labile and microbial carbon pools in the organic layer (10 cm) of forest podzols amounted to 0.19 and 0.66 t/ha, respectively; those in the organic layer (40 cm) of peat cryozems of flat-topped peat mounds reached 1.24 and 3.20 t/ha, and those in the oligotrophic peat soils (50 cm) of large peat mounds were 2.76 and 1.35 t/ha, respectively. The portion of microbial carbon in the total carbon pool (C_micr/C_tot, %) varied significantly; according to the values of this index, the soils were arranged into the following sequence: oligotrophic peat soil < peat cryozem < podzol.     

Short-term carbon mineralization in saline–sodic soils

Previous studies have shown that carbon (C) mineralization in saline or sodic soils is affected by various factors including organic C content, salt concentration and water content in saline soils and soil structure in sodic soils, but there is little information about which soil properties control carbon dioxide (CO₂) emission from saline-sodic soils. In this study, eight field-collected saline–sodic soils, varying in electrical conductivity (EC_e, a measure of salinity, ranging from 3 to 262 dS m⁻¹) and sodium adsorption ratio (SAR_e, a measure of sodicity, ranging from 11 to 62), were left unamended or amended with mature wheat or vetch residues (2% w/w). Carbon dioxide release was measured over 42 days at constant temperature and soil water content. Cumulative respiration expressed per gram SOC increased in the following order: unamended soil<soil amended with wheat residues (C/N ratio 122)<soil with vetch residue (C/N ratio 18). Cumulative respiration was significantly (p < 0.05) negatively correlated with EC_e but not with SAR_e. Our results show that the response to EC_e and SAR_e of the microbial community activated by addition of organic C does not differ from that of the less active microbial community in unamended soils and that salinity is the main influential factor for C mineralization in saline–sodic soils.     

Microbial Community Changes Along a Land-Use Gradient of Desert Soil Origin

Soil harbors remarkably stabilize bacterial communities at the phylum level.However,no two soils have exactly the same structure of bacterial phyla.The structure of microbial community is strongly influenced by the type of land-use through changes in soil attributes.Using high-throughput pyrosequencing and quantitative polymerase chain reaction techniques,soil microbial community structures were investigated along a land-use gradient of 100- and 27-year farmlands,a 33-year Pinus forest,a 28-year poplar forest,and a 21-year shrubland,as well as a native desert from which all cultivated systems were converted.The results revealed that the dominant phylotypes in the native soil comprised primarily of Alphaproteobacteria,Actinobacteria,Bacteroidetes,and Firmicutes,accounting for >71.4%of the total bacterial 16S rRNA sequence reads.Changes in land-use led to a significant decrease in these dominant phylotypes down to 33.4%.In contrast,the phylotypes with low abundance,such as Acidobacteria,Chloroflexi,Nitrospira,and Gammaproteobacteria,increased sharply from 4.5%-5.9%in the native soil to 20.9%-30.2%of the total 16S rRNA gene sequences in the cultivated soils except for the soil from the shrubland.These contrasting changes in the major taxa appear to be correlated with the changes in soil attributes.For instance,bacterial and archaeal amoA genes were found to be 960-and 3 800-fold more abundant in the soil from the 100-year farmland than the native soil.The changes in numerically less dominant nitrifying phylotypes are consistent with soil inorganic nitrogen dynamics.Quantification of the 16S rRNA genes demonstrated that bacteria and archaea were about two to three orders of magnitude more abundant in the cultivated soil than in the native soil.Hence,land-use type affects the soil bacterial community structure,which has profound consequences on ecosystem function.     

Microbial communities of Lumbricus terrestris L. middens: structure, activity, and changes through time in relation to earthworm presence

Background, aim, and scope  Earthworms make a major contribution to decomposition in ecosystems where they are present, mainly acting in the drilosphere, that is, galleries, burrows, casts, and middens. Earthworm middens are hot-spots of microbial activity and nutrient dynamics and represent a suitable model for studying earthworm-mediated influences on soil microbial communities by alteration of the patch structure of the microbial environment. We studied the structure and activity of the microbial communities in the soil system formed by middens of Lumbricus terrestris and the soil below and surrounding them and the role of earthworms in maintaining these structures through time. Material and methods  We set up an experiment in which middens were either left (control) or removed from their original place (translocated) and left in a nearby area free of earthworm activity for 2 months. After 1 and 2 months we sampled middens, soil below them, and surrounding soil. We analyzed the phospholipid fatty acid (PLFA) profiles and measured respiratory fluxes of CO₂ and CH₄. Results  Microbial communities of middens clearly differed from those of soil below and surrounding soil samples, showing higher bacterial and fungal PLFAs (p < 0.0001 and p < 0.01, respectively); furthermore, changes in microbial communities were stronger in control middens than in translocated middens. Moreover, gram positive and negative bacterial PLFAs were greater in translocated than control middens (p < 0.0001 and p < 0.001, respectively), as well as total organic carbon (p < 0.001). Microbial activity was higher in middens than in soil below and surrounding soil samples both for CO₂ (p < 0.0001) and CH₄ (p < 0.0001). Discussion  Soil bioturbation by the earthworm L. terrestris was strong in their middens, but there was not any effect on soil below and surrounding soil. Microbial communities of middens maintain their biomass and activity when earthworms were not present, whereas they decreased their biomass and increased their activity when earthworms were present. Conclusions  Earthworms strongly enhanced microbial activity measured as CO₂ production in middens, which indicates that there are hot spots for soil microbial dynamics and increasing habitat heterogeneity for soil microorganisms. Moreover, our data strongly support the fact that the impact of this earthworm species in this soil is restricted to their middens and increasing soil heterogeneity. Recommendations and perspectives  Our data indicate that it is not clear if earthworms enhance or depress microbial communities of middens since the microbial activity increased, but did not modify their biomass and this was not dependent on soil organic C content. These results indicate no competence for C pools between this anecic earthworm and microorganisms, which has been found for other earthworm species, mainly endogeics. Conversely, they suggest some type of facilitation due to the release of additional nutrient pools in middens when earthworms are present, through the digestion of middens' material or the addition of casts produced from other food sources.