Genome-wide detection of signatures of selection in three Valdostana cattle populations

The Valdostana is a local dual purpose cattle breed developed in Italy. Three populations are recognized within this breed, based on coat colour, production level, morphology and temperament: Valdostana Red Pied (VPR), Valdostana Black Pied (VPN) and Valdostana Chestnut (VCA). Here, we investigated putative genomic regions under selection among these three populations using the Bovine 50K SNP array by combining three different statistical methods based either on allele frequencies (F_ST) or extended haplotype homozygosity (iHS and Rsb). In total, 8, 5 and 8 chromosomes harbouring 13, 13 and 16 genomic regions potentially under selection were identified by at least two approaches in VPR, VPN and VCA, respectively. Most of these candidate regions were population-specific but we found one common genomic region spanning 2.38 Mb on BTA06 which either overlaps or is located close to runs of homozygosity islands detected in the three populations. This region included inter alia two well-known genes: KDR, a well-established coat colour gene, and CLOCK, which plays a central role in positive regulation of inflammatory response and in the regulation of the mammalian circadian rhythm. The other candidate regions identified harboured genes associated mainly with milk and meat traits as well as genes involved in immune response/inflammation or associated with behavioural traits. This last category of genes was mainly identified in VCA, which is selected for fighting ability. Overall, our results provide, for the first time, a glimpse into regions of the genome targeted by selection in Valdostana cattle. Finally, this study illustrates the relevance of using multiple complementary approaches to identify genomic regions putatively under selection in livestock.     

Regeneration of mixed deciduous forest in a Dutch forest-heathland, following a reduction of ungulate densities

The conversion of single-species coniferous forest stands into mixed stands by promoting the natural regeneration of indigenous broadleaved tree species was studied in a forest-heathland on the Veluwe, in the central part of the Netherlands. Red deer (Cervus elaphus), roe deer (Capreolus capreolus) and wild boar (Sus scrofa) had a large impact on regeneration dynamics, as was established by comparing 20 pairs of fenced and unfenced plots (40 × 40 m) during a 10-year period. A fivefold reduction of total herbivore biomass to 500 kg per km², resulted in a strong increase of shrub and tree sapling numbers in all vegetation types. However, height growth of the most palatable broadleaved tree species was still strongly impeded. Under the present-day grazing pressure, Scots pine (Pinus sylvestris) and beech (Fagus sylvatica) will become the dominant canopy species in the forests in the near future. It is argued that the most browse-sensitive woody species such as pedunculate and sessile oak (Quercus robur and Q. petraea) will successfully regenerate, only if temporal and spatial variation in browsing pressure is allowed to occur.     

Potential of Exopolysaccharide from Porphyridium marinum to Contend with Bacterial Proliferation,Biofilm Formation,and Breast Cancer

Exopolysaccharide (EPS) from marine microalgae are promising sources of a new generation of drugs. However, lot of them remain to be discovered and tested. In this study, EPS produced by Porphyridium marinum and its oligomers prepared by High Pressure Homogenizer have been tested for different biological activities, i.e., antibacterial, anti-fungal and antibiofilm activities on Candida albicans, as well as for their effects on the viability of murine breast cancer cells. Results have shown that all EPS samples present some biological activity. For antibacterial and antibiofilm activities, the native EPS exhibited a better efficiency with Minimum Inhibitory Concentration (MIC) from 62.5 µg/mL to 1000 µg/mL depending on the bacterial strain. For Candida albicans, the biofilm formation was reduced by about 90% by using only a 31.3 µg/mL concentration. Concerning breast cancer cells, lower molar masses fractions appeared to be more efficient, with a reduction of viability of up to 55%. Finally, analyses of polymers composition and viscosity measurements were conducted on all samples, in order to propose hypotheses involving the activities caused by the intrinsic properties of polymers.     

Abiotic factors affecting the larvicidal activity of the Bacillus thuringiensis Vip3Aa16 toxin against the lepidopteran pest Ephestia kuehniella

Journal of Plant Diseases and Protection - BUPM95 is a Bacillus thuringiensis subsp. kurstaki strain producing the Vip3Aa16 protoxin with an interesting insecticidal activity against the...     

Using economic incentives and regulations to reduce seawater intrusion in the Batinah coastal area of Oman

Excessive groundwater abstraction is a major problem in Oman, primarily in the Batinah coastal area where it results in seawater intrusion. The Government began to address the problem in the 1990s by encouraging the use of more efficient irrigation systems, replacing date palms with winter vegetable crops and using treated wastewater for municipal irrigation. However, 15 years later, seawater intrusion in the Batinah aquifers is still advancing at an alarming pace. This paper analyses the relative merits of strategies to control groundwater pumping based on water quotas, electricity quotas and electricity pricing. A cost benefit approach is used to evaluate the feasibility of three strategies over a period of 25 years and to compare them to the “business as usual” option. Results show that the net present loss to the community when no active policy is implemented amounts to (−$288) million. Imposing water quotas on tubewells would give a net present benefit of $153 million. However, such quotas would give the lowest present benefit and create inequity among farmers. Other possible approaches would be to control the pumping of groundwater from all wells - tubewells and dug wells - by enforcing energy quotas and by increasing the price of electricity used to pump water. The net present benefits would be greater and the costs to farmers would be more fairly spread. The results of cost-benefit analysis show that enforcing an electricity quota, coupled with removal of the subsidy on the electricity price, is the easiest and most equitable solution to implement.     

Bioactive Compounds and Pharmacological Potential of Pomegranate (Punica granatum) Seeds - A Review

Plant Foods for Human Nutrition - The use of complementary medicine has recently increased in an attempt to find effective alternative therapies that reduce the adverse effects of drugs....     

<Emphasis Type="Italic">Carica papaya</Emphasis> Lipase: A Naturally Immobilized Enzyme with Interesting Biochemical Properties

Triacylglycerol (TAG) lipases have been thoroughly characterized in mammals and microorganisms, whereas very little is known about plant TAG lipases. The lipolytic activity occurring in all the laticies is known to be associated with sedimentable particles, and all attempts to solubilize the lipolytic activity of Carica papaya latex have been unsuccessful so far. However, some of the biochemical properties of the lipase from Carica papaya latex (CPL) were determined from the insoluble fraction of the latex. The activity was optimum at a temperature of 37°C and a pH of 9.0, and the specific activities of CPL were found to be 2,000 ± 185 and 256 ± 8 U/g when tributyrin and olive oil were used as substrates, respectively. CPL was found to be active in the absence of any detergent, whereas many lipases require detergent to prevent the occurrence of interfacial denaturation. CPL was inactive in the presence of micellar concentrations of Triton X-100, sodium dodecyl sulfate (SDS) and tetradecyl trimethylammonium bromide (TTAB), and still showed high levels of activity in the presence of sodium taurodeoxycholate (NaTDC) and the zwitterionic Chaps detergent. The effects of various proteases on the lipolytic activity of CPL were studied, and CPL was found to be resistant to treatment with various enzymes, except in the presence of trypsin. All these properties suggest that CPL may be a good candidate for various biotechnological applications.