Genome-wide association analysis for stripe rust resistance in spring wheat(Triticum aestivum L.) germplasm

Stripe rust is a continuous threat to wheat crop all over the world. It causes considerable yield losses in wheat crop every year. Continuous deployment of adult plant resistance(APR) genes in newly developing wheat cultivars is the most judicious strategy to combat this disease. Herein, we dissected the genetics underpinning stripe rust resistance in Pakistani wheat germplasm. An association panel of 94 spring wheat genotypes was phenotyped for two years to score the infestation of stripe rust on each accession and was scanned with 203 polymorphic SSRs. Based on D' measure, linkage disequilibrium(LD) exhibited between loci distant up to 45 c M. Marker-trait associations(MTAs) were determined using mixed linear model(MLM). Total 31 quantitative trait loci(QTLs) were observed on all 21 wheat chromosomes. Twelve QTLs were newly discovered as well as 19 QTLs and 35 previously reported Yr genes were validated in Pakistani wheat germplasm. The major QTLs were QYr.uaf.2 AL and QYr.uaf.3 BS(PVE, 11.9%). Dissection of genes from the newly observed QTLs can provide new APR genes to improve genetic resources for APR resistance in wheat crop.     

Assessment of cross‐protection to heterologous strains of Flavobacterium psychrophilum following vaccination with a live‐attenuated coldwater disease immersion vaccine

Bacterial coldwater disease, caused by Flavobacterium psychrophilum, remains one of the most significant bacterial diseases of salmonids worldwide. A previously developed and reported live‐attenuated immersion vaccine (F. psychrophilum; B.17‐ILM) has been shown to confer significant protection to salmonids. To further characterize this vaccine, a series of experiments were carried out to determine the cross‐protective efficacy of this B.17‐ILM vaccine against 9 F. psychrophilum isolates (representing seven sequence types/three clonal complexes as determined by multilocus sequence typing) in comparison with a wild‐type virulent strain, CSF‐259‐93. To assess protection, 28‐day experimental challenges of rainbow trout (Oncorhynchus mykiss) fry were conducted following immersion vaccinations with the B.17‐ILM vaccine. F. psychrophilum strains used in challenge trials were isolated from several fish species across the globe; however, all were found to be virulent in rainbow trout. The B.17‐ILM vaccine provided significant protection against all strains, with relative percent survival values ranging from 51% to 72%. All vaccinated fish developed an adaptive immune response (as measured by F. psychrophilum‐specific antibodies) that increased out to the time of challenge (8 weeks postimmunization). Previous studies have confirmed that antibody plays an important role in protection against F. psychrophilum challenge; therefore, specific antibodies to the B.17‐ILM vaccine strain appear to contribute to the cross‐protection observed to heterologous strain. The ability of such antibodies to bind to similar antigenic regions for all strains was confirmed by western blot analyses. Results presented here support the practical application of this live‐attenuated vaccine, and suggest that it will be efficacious even in aquaculture operations affected by diverse strains of F. psychrophilum.     

3D simulation of the permeability tensor in a soil aggregate on basis of nanotomographic imaging and LBE solver

Purpose  

The purpose of this hydropedological work is to investigate the feasibility of a method to calculate permeability of soil peds on the matrix pore scale resolution. This paper focuses on imaging of the intra-aggregate microstructure and, based on the three-dimensional (3D) images, quantification of the pore network connectivity and permeability tensor. Finally, lattice Boltzmann equation (LBE) simulations of Navier–Stokes flow in the thus derived pore network allow to compute the heterogeneous 3D flow velocity field.     

Chitosan-filled polypropylene composites: The effect of filler loading and organosolv lignin on mechanical,morphological and thermal properties

In this work, the effect of organosolv lignin on properties of polypropylene (PP)/chitosan composites was investigated. Mechanical and thermal properties of the composites were analyzed by means of ASTM D 638-91, ASTM D 256, thermogravimetry analysis (TGA) and differential scanning calorimetry (DSC). Tensile strength and elongation at break of the PP composites decreased upon the presence of chitosan filler, but Young’s modulus improved. Impact strength was found to increase with the maximum value at 30 php of filler loading. At a similar loading, treated PP/chitosan composites were found to have higher tensile strength, elongation at break, Young’s modulus as well as impact strength than untreated composites. Furthermore, the presence of organosolv lignin imparted a plasticizing effect. Thermal properties of the treated PP/chitosan composites were better as compared with the untreated PP/chitosan composites; although the chemical treatment did not alter the thermal degradation mechanism. In addition, the obtained results were comparable to results from previous studies. This finding implied that the organosolv lignin could be a potential reagent to replace its synthetic counterpart.     

运用简单线性水库模型计算Pothwar黄土平原（巴基斯坦）磷灰石损失情况

Apatite is the dominant phosphorus （P） mineral in early stages of soil development, and its redistribution as labile forms under pedogenesis controls terrestrial bioavailability. Quantitative distribution of labile forms of P and apatite-P was examined in Pothwar Loess Plain, Pakistan where the degree of pedogenesis varied with relief. Four soil types, Typic Ustorthents （Rajar）, Typic Calciustepts （Missa）, Udic Calciustepts （Basal）, and Udic Haplustalfs （Guliana）, were sampled from three replicated locations at genetic horizon level. With the exception of total P value at surface, the mean total and apatite-P decreased towards the surface in Udic Haplustalfs and Udic Calciustepts where dicalcium and octacalcium phosphate increased toward surface. Iron （oxides and oxyhydroxides） adsorbed and occluded P forms were also in greater quantities in Udic Haplustalfs and increased toward the surface, whereas they were lowest and uniform in the Typic Ustorthents. Aluminum- and organic P correlated with soil organic matter. Apatite-P decreased exponentially with an increase in the sum of iron adsorbed and occluded P fractions, and fitted the equation M（x） =M0[1 - exp（-wx）] with r^2=0.996, where M（x） is the mean apatite-P concentration in solum, M0 is the apatite-P content in the loess sediments, x is the cumulative iron adsorbed and occluded P, and w is an empirical factor indicating the change rate of apatite-P in the loess. From the calculated apatite-P of 740 mg kg^-1 at the time of deposition, mean apatite-P loss was 60% in Udic Haplustalfs, 33% in Udic Calciustepts, 23% in Typic Calciustepts, and 8% in Typic Ustorthents. The transformation of soil P to labile forms was faster and deeper in level or slight depressions followed by gently sloping areas in wide plains, and was the least in the gullied land.     

Limit of colour vision in dim light in larvae of the giant freshwater prawn <Emphasis Type="Italic">Macrobrachium rosenbergii</Emphasis>

Colour vision depends on sufficient ambient light and becomes ineffective at a particular low light intensity. It is not known how decapod crustaceans see colour in dim light. In the present study we investigated the colour vision threshold in larvae of the giant freshwater prawn Macrobrachium rosenbergii in a tank under natural illumination. Plastic beads of different colours (blue, red, yellow and white) in various combinations were suspended in the tank. The larvae swam straight toward the beads and gathered around them. The number of larvae was highest on the blue and white beads. The luminance in the tank was then gradually decreased by covering it with different numbers of layers of black cloth, and the response of the larvae to the beads was video-recorded under infrared illumination. The preference for blue and white beads remained manifest as the luminance was reduced from 418 to 0.07 cd/m², but not at 0.02 cd/m², indicating a colour vision threshold between 0.07 and 0.02 cd/m². The larvae have apposition compound eyes with large optical parameters, comparable to those of apposition eyes of nocturnal insects, which presumably capture more light and show enhanced sensitivity, enabling the larvae to see colour in dim light.     

Ethnoveterinary health management practices using medicinal plants in South Asia – a review

Animal rearing is the major occupation of most population of South Asian countries. Due to lack of resources and limited approach to modern medicine, most of the livestock raisers prefer to use plant-based traditional medicine also referred to as ethnoveterinary medicine (EVM). Indeed, the use of medicinal plants in South Asia dates back to several centuries with documented evidences. However, there is currently a dearth of documentation and compilation of use of medicinal plants for animal diseases in this part of the world. This review aims to provide an up-to-date compilation of common medicinal plants used for the treatment and/or management of common animal diseases in South Asian countries. Extensive literature search was conducted online and relevant data was retrieved from well-known scientific databases. A total of 276 plants belonging to 95 families have been documented to be in common use for managing 14 different categories of animal diseases. Solanaceae, Lamiaceae, Fabaceae, and Leguminosae were most common plant families in terms of their plant species used for EVM. Gastric diseases were commonly reported and accounted for 72 species of plants used for its treatment followed by the miscellaneous disorders category and skin diseases comprising of 65 and 39 plant species respectively. Herbs accounted for 46% of the total plant species, followed by trees (33%), and shrubs (18%). The EVM were applied through different routes of administration; oral administration accounted for 72% followed by topical application 27%, while burning of plant parts to create smoke around animals to repel insects was less common (1%). It is anticipated that the present review will stimulate further ethnoveterinary research among livestock disease management practices in South Asia.     

Challenges in organic component selection and biochar as an opportunity in potting substrates: a review

Plant production in potting substrates provides maximum profit on the applied inputs, and hence, directly improving the socio-economic condition of the grower/nurserymen. The main challenge in this industry is sourcing of materials for their potting substrates. Peat and perlite have been widely preferred materials. However, recently higher prices, more restrictive legislation of many countries and wetland ecosystem destruction through its extraction has limited peat use. Nowadays, producers focus towards peat alternatives that provide good performance, are readily available, inexpensive and environment friendly to attain sustainability in potted plant production. In an effort to grasp sustainability during the last few decades, many industrial and agricultural waste materials were reviewed for their use in potting substrates. In these studies, the major focus remained on material characterization, neglecting their economics, technical aspects and environmental impacts. Thus, switching from peat and perlite to alternatives requires material exploration. In the present review, we summarize a clearer and practical approach for substituting different materials especially biochar to fulfill the need of modern potting substrate industry. Biochar has the potential to sustain the substrate production on a long-term basis.     

Identification of <Emphasis Type="Italic">Fusarium</Emphasis> species associated with soybean root rot in Sichuan Province,China

Soybean root rot is a worldwide soil-borne fungal disease threatening soybean production, causing large loss in yield and quality of soybean. Fusarium species are well recognized as the important causal agent of Fusarium root rot, which are often distinct with respect to various factors in different soybean-producing regions around the world. Recently, Fusarium root rot has been frequently reported in Sichuan Province of China, where is unique in its climate and diverse cropping patterns, but it is still unclear about the predominant Fusarium species and their pathogenicity on soybean. In this study, diseased soybean roots were collected from three regions of Sichuan Province during 2014–2015. Based on morphological characteristics and phylogenetic analysis of nucleotide sequences of the ribosomal internal transcribed spacer region and the translation elongation factor 1-α gene, 78 isolates of Fusarium were identified as nine distinct species. Pathogenicity tests showed that seven species of Fusarium were able to infect soybean, but differed in pathogenicity. F. oxysporum, F. equiseti and F. graminearum were the most aggressive species to soybean, whereas F. fujikuroi and F. verticillioides were not pathogenic to soybean. There was a strong positive correlation of the pathogenicity of Fusarium species with seedling emergence and fresh root weight. In addition, the diversity of Fusarium species varied among soybean-growing regions. To our knowledge, this report on population and pathogenicity of Fusarium species, in particular, F. graminearum, associated with soybean root rot in Sichuan Province of southwest China, will be helpful to provide effective control strategies for the disease.