Comparison of morphological and DNA-based techniques for stomach content analyses in juvenile chum salmon <Emphasis Type="Italic">Oncorhynchus keta</Emphasis>: a case study on diet richness of juvenile fishes

To identify the stomach contents of marine organisms, morphological observations are commonly conducted. However, the results obtained by this traditional method are frequently biased, as it is difficult to detect partially digested, soft-bodied organisms. To resolve this, recent studies have used DNA-based (DNA barcoding) analyses to examine the diet breadth of marine organisms. Here, we compared the prey richness of juvenile fishes using morphological observations and DNA-based analyses, with a focus on juvenile chum salmon Oncorhynchus keta. A higher number of prey taxa were successfully identified using DNA-based analyses than morphological observations. However, we also noticed several shortcomings of the DNA-based analyses, as reported in other diet-analysis studies that used molecular techniques. For example, the degree of digestion among prey taxa might have resulted in differential sensitivity to DNA detection. Additionally, several prey taxa could not be precisely identified, as the sequence data for some of the targeted organismal groups are unavailable in public gene databases. Remarkably, it is also possible that DNA-based analyses detected secondary prey, and therefore, the richness of prey taxa was likely overestimated. Thus, dietary analyses of juvenile fishes need to be carefully conducted, considering the respective advantages and disadvantages of DNA-based and morphological techniques.     

Availability of potato protein concentrate as an alternative protein source to fish meal in greater amberjack (Seriola dumerili) diets

Potato protein concentrate (PPC) is a promising candidate as a fish meal (FM) substitute because it has high protein and essential amino acid content. In the present study, we replaced FM in greater amberjack diets with PPC to investigate the effect on growth and feed utilization. Four isonitrogenous, isolipidic and isocaloric experimental diets were prepared by substituting 0, 20, 40 and 60% of FM protein with PPC (Control, P20, P40 and P60 respectively). The in vitro protein digestibility of protein in PPC was 88.8%, relative to 100% protein in the FM. The in vitro protein digestibility of protein in the experimental diets also decreased with increasing PPC and was lowest at 84.2% in P60. After the 7‐week feeding trial, final body weight, weight gain and thermal growth coefficient tended to decrease with increasing PPC and were significantly lower in P60 than in the control (p < .05). Further, fish fed with diets P40 and P60 showed significantly lower feed conversion and protein efficiency ratios than the control group (p < .05). In conclusion, the results suggest that PPC can replace up to 20% of FM in the diet of greater amberjack without compromising the growth performance or feed efficiency.     

Lipopolysaccharide induces expression of collagen VI in the rat lung

The involvement of the lung during the septic systemic inflammatory response elicited by administration of lipopolysaccharide (LPS) was investigated. Eight-week-old male Sprague–Dawley rats were injected i.p. with 15 mg/kg LPS. After 24 h, the lungs were excised to evaluate the cellular responses to LPS. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF) analysis revealed that type VI collagen (ColVI) was extremely upregulated during sepsis in the rat lung within the first 24 h of LPS administration. Upregulation of ColVI protein and its mRNA was demonstrated by Western blot analysis, real time PCR, and immunohistochemistry. To the best of our knowledge, this is the first report demonstrating the activation of ColVI in the rat lung at the early stage of systemic inflammation. Activation of ColVI might be involved in sepsis-mediated lung fibrosis at an early stage.     

Positional strategy of trunk muscles among aquatic,semi-aquatic and terrestrial species in Urodela

Clarification of the trunk structure in Urodela is important in understanding the locomotive evolution of basal tetrapods. The components of the muscular trunk wall among Urodela using different modes of locomotion were compared. Since the whole trunk may be used for swimming and the effect of limbs may be small in the more aquatic species, they showed smaller differences in the trunk muscles among anterior, middle and posterior sections of the trunk. By contrast, in the more terrestrial species, the dorsal and abdominal muscles are larger in the middle section than those in the anterior and posterior sections. High compressive stresses occur in the supporting limbs and their insertion at the trunk on the ventral side, and spread from the forelimbs along the back to the supporting hindlimbs on the dorsal side. Tensile stresses occur in the middle ventral part. The components of the trunk muscles among the three sections may reflect differences in stresses occurring in the trunk of the more terrestrial species. The findings also suggest that in the middle section, larger dorsal muscles for stiffening the back to maintain posture and larger abdominal muscles are responsible for balancing the body weight while it is supported by the limbs in the more terrestrial species.     

Observation of three‐dimensional flow structures and effluent transport around fish cages using a towed ADCP and free‐fall multi‐parameter profiler

A field campaign was conducted around salmon cages, using a combination of a towed ADCP and a free‐fall multi‐parameter profiler, in order to investigate flow structures and the possible distribution of effluent materials. Two transect observations showed that hydrographic conditions changed dramatically within 5 days, from highly stratified open water conditions to weak stratification. Three‐dimensional observation revealed that flow was blocked behind the cages and that the blockage was reduced as the distance from the cages increased. The flow speed was positively correlated with the intensity of the backscattering signal. The R² value was high immediately behind the cages and decreased with distance from the cages. The flow time series behind the cages exhibited a k^–2 power law spectrum that was consistent with a typical internal wave spectrum. This suggests that eddies shed from the cages were highly influenced by stratification. We estimated the rate of kinetic energy dissipation, , from YODA Profiler data based on the Thorpe scale approach. We also estimated the eddy diffusivity coefficient, . Both and followed a lognormal probability density function. The mean was consistent with a one‐dimensional diffusion model assessed from the R² values of flow speed and backscatter intensity.     

Persimmon breeding in Japan for pollination-constant non-astringent (PCNA) type with marker-assisted selection

Oriental persimmon (Diospyros kaki) originated in Eastern Asia, and many indigenous cultivars have been developed in China, Japan, and Korea. These cultivars are classified into four groups based on their natural astringency loss on the tree and seed formation: pollination-constant non-astringent (PCNA), pollination-variant non-astringent (PVNA), pollination-constant astringent (PCA), and pollination-variant astringent (PVA). PCNA is the most desirable type because the fruit can be eaten without any postharvest treatment; therefore, one of the goals of our persimmon breeding programs is to release superior PCNA cultivars. The PCNA genotype is recessive to the other three non-PCNA genotypes, and PCNA-type F₁ offspring are obtained exclusively from crosses among PCNA genotypes. Moreover, the number of superior PCNA cross-parents have been limited. In the late 1980s, inbreeding depression became obvious, especially in terms of fruit size, tree vigor, and productivity. To mitigate the inbreeding, a backcross program using PCNA [(non-PCNA × PCNA) × PCNA] was started in 1990. This process, however, was inefficient because only 15% of the offspring were PCNA, and all offspring had to be grown to the fruiting stage. Therefore, molecular markers linked to the PCNA locus were developed for discriminating PCNA offspring. A molecular marker linked to Chinese PCNA has also been developed.     

Protective effect of floor cover against soil erosion on steep slopes forested with <Emphasis Type="Italic">Chamaecyparis obtusa</Emphasis> (hinoki) and other species

 We evaluated the protective effects of floor cover against soil erosion in three types of forest located on steep slopes under a humid climate: 22- and 34-year-old Chamaecyparis obtusa (hinoki), 34-year-old Cryptomeria japonica (sugi), and 62-year-old Pinus densiflora (red pine) stands. We measured sediment transport rates (sediment mass passing through one meter of contour width per millimeter of rainfall), using sediment traps, before and after removing floor cover. Raindrop splash erosion was dominant in the experimental stands. Floor cover percentage (FCP) during the preremoval stage varied from 50% to 100% among the four stands, and sediment transport rates ranged from 0.0079 to 1.7 g m⁻¹ mm⁻¹. The rates increased to 1.5–5.6 g m⁻¹ mm⁻¹ immediately after removing floor cover, and remained high throughout the experiment. The presence of physical cover near the ground has a crucial effect on sediment transport on forested slopes. The protective effect ratio (the ratio of the sediment transport rate in a control plot to that in the removal plot) in a young hinoki stand, in which the FCP decreased markedly, was 0.3 at most, which is close to the rate for bare ground. The protective effect ratio in the red pine stand was ≤0.003. We concluded that the protective effect of floor cover in undisturbed forests in Japan differs by over two orders of magnitude, based on comparisons with previous studies. Received: March 11, 2002 / Accepted: August 16, 2002 Present address: Department of Forest Site Environment, Forestry and Forest Products Research Institute, Ibaraki 305-8687 Japan Tel. +81-298-73-3211; Fax +81-298-74-3720 e-mail: miura@affrc.go.jp Present address: Department of Forest Site Environment, Forestry and Forest Products Research Institute, Ibaraki 305-8687 Japan Tel. +81-298-73-3211; Fax +81-298-74-3720 e-mail: miura@affrc.go.jp Acknowledgments This study was supported by the Research Council of the Ministry of Agriculture, Forestry, and Fisheries, of Japan. We thank H. Ujihara, S. Ujihara, and M. Ogasawara in Otoyo, Kochi, who provided the experimental stands used in this study. We also thank K. Hirai, S. Kuramoto, E. Kodani, and the rest of the staff at the Shikoku Research Center, Forestry and Forest Products Research Institute, for their help in conducting the experiments. Correspondence to:S. Miura