Assessing landscapes: a case study of tree and shrub diversity in the seasonally dry tropical forests of Oaxaca, Mexico and southern Honduras

Tropical dry forests, with their distinct and economically important diversity, are acknowledged conservation priorities because of alarming rates of forest conversion. Whilst it is realised that terrestrial conservation requires an understanding of landscape level patterns of diversity, forests are rarely assessed accordingly. Here we demonstrate that, in the case of the seasonally dry tropical forests of the Pacific watershed of Mesoamerica, landscape level assessment of woody diversity can inform decision making relevant to both between-landscape and within-landscape prioritisation. We report floristic surveys of dry forest landscapes in Oaxaca, Mexico and southern Honduras. It is noted that these forests are floristically similar to other seasonally dry tropical forests in the neotropics. By calculation of Genetic Heat Indices, a relative measure of the concentration of restricted range species in a sample, we determine that the conservation of the tree diversity of the coastal lowlands of Oaxaca should be prioritised over that of southern Honduras. The current conservation status of forested areas in Oaxaca is briefly described. We suggest that the greater degree of anthropogenic disturbance in southern Honduras may explain the relative lack of restricted range species there. We argue that some forest fallows can act as analogues of mature forest and therefore landscape elements other than mature forest need to be included in forest conservation assessments. We conclude that diversity sampling of any forest type should not be limited to mature forests, but extended to other elements of forested landscapes.     

Correlación Anatomo-radiológica de la Cabeza en la Cabra de Raza Canaria (Capra hircus L.)

A radiologic and tomographic study was made of the cranioencephalic topography of canary goats of medium weight and size. In a first step, the exocranialis references corresponding to an axis designed at the level of the meatus acusticus externus and parallel to the basicranial axis were anatomically and radiologically defined. Conventional stereotaxic techniques were then used to reach the standard position of the head in order to obtain macroscopical cross sections at different levels perpendicular to the base of the cranium. In a second step, a tomographic study was made to confirm the design of the axis.     

Nitrogen loading of Eucalyptus globulus seedlings: nutritional dynamics and influence on morphology and root growth potential

New Forests - Achieving successful outplanting of trees on increasingly harsher sites is a global concern. In Chile, for example, new Eucalyptus globulus plantations are being targeted to poorer,...     

Local and remote physical processes driving variability of the planktonic system in the Juan Fernández Archipelago: A multidisciplinary framework providing conservation insights

1. The Juan Fernandez Ridge, a vulnerable marine ecosystem located far off the coast of central Chile and formed by several seamounts, guyots and three islands (Robinson Crusoe, Santa Clara and Alejandro Selkirk), has recently been declared a Coastal Marine Protected Area of Multiple Uses with several National Parks embedded in it.
2. Recent studies have highlighted the influence of remote and local oceanographic structures on the hydrographic dynamics of this ridge. However, there is still a gap in understanding how they affect the structure and dynamics of the surrounding insular planktonic communities.
3. A hydroacoustic and oceanographic survey was conducted during the austral spring (October 2016), including hydrographic and zooplankton sampling around Robinson Crusoe Island. Oceanographic features were identified and tracked using satellite data (chlorophyll-a (Chl-a) and sea surface temperature) and modelling results.
4. Two events of Chl-a increase relative to a threshold (>0.45 mg m⁻³) were forced by different physical processes, both affecting the western side of Robinson Crusoe Island. In event A during the cruise period, Chl-a subsurface maxima were associated with the arrival of a coastal meander originating on the continental shelf off Chile (remote process); the zooplankton was dominated by copepods and salps, with an evident coastal–oceanic gradient. In event B, Chl-a maxima were linked to a local upwelling forced by the intensification of a localized SSW wind. No influence of remote eddies or local Von Kármán vortices on Chl-a distribution was observed.
5. These findings highlight the influence of remote and local physical processes on the structure of planktonic communities around Robinson Crusoe Island. Understanding the variability of these mechanisms and their effects at the base of the pelagic food web is critical in adopting an ecosystem-level approach.

     

PRENATAL SONOGRAPHIC DIAGNOSIS OF FETAL DEATH AND HYDRANENCEPHALY IN TWO CHIHUAHUA FETUSES

Hydranencephaly and fetal death was diagnosed in two of three fetuses during the abdominal sonographic examination of a 2.5-year-old, intact female Chihuahua that had clinical signs of dystocia 63 days after mating. A cesarean section was performed and one live normal puppy was present. Two dead puppies, each with a markedly enlarged and fluid filled skull were removed.     

Persistence and molecular evolution of Mycobacterium bovis population from cattle and wildlife in Doñana National Park revealed by genotype variation

The role of wildlife in tuberculosis epidemiology is being widely studied since it can affect the effectiveness of eradication campaigns in cattle. The health problem is enhanced when it concerns also wildlife welfare and biodiversity conservation. This study was performed to understand the epidemiology of Mycobacterium bovis population affecting livestock and wild animals in the Do?ana National Park using bacteriology and molecular characterisation techniques. Tuberculosis research was performed on 1209 cattle and wild animals (artiodactyla and carnivore) collected over 6 years in the Park. One hundred and sixty-three animals were found to be infected with M. bovis, comprising 7.96% of the cattle and 20.53% of the wild animals tested. Spoligotyping revealed nine patterns, being SB1232 and SB1230 the most prevalent (77.30% and 15.34% of infected animals, respectively). MIRU-VNTR analysis of a selected panel of 92 isolates showed eight different profiles, including several spoligotypes within the same MIRU-VNTR profile. The discriminatory capacity of both techniques in this panel was similar. The results obtained by combination of both techniques corroborate that wildlife species are infected with the M. bovis strains which are more prevalent in cattle and reveal their persistence. Genotype variation between isolates strongly suggests micro-evolutionary events in the M. bovis population in the same area. This study in the Do?ana National Park exposes the risk of introduction of domestic animals into wildlife areas when there is not a warranty of disease freedom, appropriate diagnostic techniques and control measures.     

Applying biofloc technology in the culture of juvenile of Piaractus brachypomus (Cuvier, 1818): Effects on zootechnical performance and water quality

The aim of this study was to assess the zootechnical performance and water quality of a cachama blanca (Piaractus brachypomus) culture using biofloc technology (BFT) versus a system with daily water exchange (DWE). To do this, 180 juveniles (mean initial weight: 5.40 ± 0.19 g) were distributed in 12 circular plastic tanks with stocking densities of 20 or 40 individuals m³; then, they were cultured for 91 days. BFT treatments kept a C:N ratio approximately of 15:1. Temperature, pH and oxygen were monitored daily, while the other variables were measured weekly. Most productive variables were significantly influenced by both culture system and stocking density with significantly higher values of daily weight gain, total weight gain and total length for fish kept in DWE 20. However, only minor differences were observed within the BFT system. With the exception of the toxic nitrogen compounds (NH₄⁺ and NO₂^?), all the other water quality parameters were within the acceptable ranges for the cultivation of tropical fish. Microorganisms started to settle from the first week. A total of 23 genera were present, the most outstanding of which being seven genera of ciliates and three rotifers, rhizopods and chlorophytes. In conclusion, both systems BFT and DWE are useful for increasing the production of P. brachypomus in captivity. Additionally, the BFT system can potentially be applied for growing juveniles of this specie in regions with scarce water resources.     

Growth‐promoting bacteria for the green seaweed Ulva clathrata

Seaweed production represents one of the rising activities in the aquaculture industry. This study explores the impact of bacteria associated with the growth of Ulva clathrata, a promising alga in the field of food and bioremediation. Fifty‐six bacteria isolated from four seaweed (Caulerpa sp., Gracilaria sp., Ulva lactuca and U. clathrata) were tested to evaluate their effect on U. clathrata growth. Eight of them showed a significant growth‐promoting effect (p < .05). Isolates Ul‐11 and Ul‐12 from U. lactuca induced an increase of 73 and 81% of growth respectively. They were classified as Reugeria sp. and Alteromonas sp. based on 16S DNA sequencing (>95.0% sequence identity). Multiple combinations of the growth‐promoting bacteria were also tested on U. clathrata, and the best result was achieved by combining Ca‐3/Uc‐18/Ul‐12 isolates with a significant increase in seaweed growth of up to 76%; however, no synergistic effect was observed compared to Ul‐12 alone. Scanning electron microscopy revealed no alteration in the cell wall of U. clathrata when inoculated with selected bacteria, showing an average increase of bacterial density on U. clathrata.     

Development of an Isavirus minigenome system to study the function of the pocket RNA-binding domain of the viral nucleoprotein (NP) in salmon cells

The Isavirus is an orthomyxovirus with a genome composed of eight segments of negative single-strand RNA (−ssRNA). It has been proposed that the eight genomic segments of the Isavirus are organized as a ribonucleoprotein (RNP) complex called a minigenome, which contains all the viral RNA segments, a viral heterotrimeric polymerase and multiple copies of the viral nucleoprotein (NP). Here, we develop an Isavirus minigenome system and show the importance of the formation of active RNPs and the role of viral NP R189, R194, R302 and K325 residues in the NP RNA-binding domain in the context of RNPs. The results indicate it is possible to generate a minigenome in salmon cells, a composite ISAV RNPs with EGFP-based chimeric vRNA with heterotrimeric polymerase (PB1, PB2, PA) and NP protein using CMV-based auxiliary plasmids. It was also shown that NP R189, R194, R302 and K325 residues are important to generate viral mRNA from the constituted RNPs and a detectable reporter protein. This work is the first salmon cell-based minigenome assay for the Isavirus, which was evaluated by a bioinformatic and functional study of the NP protein in viral RNPs, which showed that correct NP-vRNA interaction is key to the functioning of RNPs.     

Exploring soil databases: a self‐organizing map approach

A soil quality database (SQDB) is a collection of soil samples described by a given set of parameters, allowing farmers, scientists and other stakeholders to make informed decisions about practices, processes and policies for soil use and management. If each parameter is considered as a dimension of the space spanned by the SQDB, extracting information becomes a difficult task when the number of parameters is >3. A widely used approach to explore multidimensional data sets is the self‐organizing map (SOM) method, which is suitable for clustering, visualization and extraction of information from multidimensional data. We applied the SOM method as an exploratory technique to an unlabelled SQDB to extract knowledge – data patterns and data associations – from the data set (the time and location of each sample were unknown). The SQDB used in this study is a set of 1240 unlabelled samples within the Central Valley of Chile, covering ca 7500 km². The predominant soils are Andisols with a large organic matter content (7–12%), small bulk densities (0.6–1.0 g/cm³) and large water‐holding capacity. We identified three patterns: (i) isolated region within the map with close neurons (smooth transitions), (ii) two or more regions with predominantly large or small values and (iii) homogeneous map with small values with an isolated region of large values. These patterns show that the data set represented more than two groups that were not necessarily related. For pH, no important associations with other investigated parameters were observed. Previous studies carried out by the local agricultural research station showed that pH values below 5.5 constrain nutrient uptake. Thus, locations presenting pH<5,5 should be subject to seasonal monitoring to assess management practices that mitigate soil acidity. The component plane for organic matter indicates that ca. 50% of the soil samples had contents <8% related to soil series characteristics and management practices. As the k‐means is initialized by random partitions, the two‐step approach (clustering the map representing the input data) is less sensitive to variations in the input data (subsamples) than is the direct application of k‐means to the input data, but it also reduces the computational cost. The ability of SOMs to visualize multidimensional data sets helps gain an understanding of the data in the exploratory phase, such as the association and integration of physical, chemical and biological parameters.