Contributions to the leafminer fauna (Diptera: Agromyzidae) from Turkey, with four new records

In a study carried out during 2002 and 2004 in Diyarbakıir and Mardin provinces, southeast Turkey, specimens were collected twice a month from cultivated and non-cultivated plants. Sixteen leafminer (Diptera: Agromyzidae) species were identified. Among them,Agromyza abiens Zetterstedt, 1848;Napomyza elegans (Meigen, 1830);Phytoliriomyza dorsata (Siebke, 1864); andPhytomyza aquilonia Frey, 1964 are new records for the Turkish leafminer http://www.phytoparasitica.org posting July 24, 2005.     

Histology of corpuscles of Stannius in Lake Van fish (Alburnus tarichi Güldenstädt, 1814) (Cyprinidae)

In the present study, the location, histology and number of corpuscles of Stannius (Sc), which are endocrine glands associated with the kidneys of teleost fish, were investigated for the first time in Lake Van fish (Alburnus tarichi), an anadromous and endemic inhabiting Turkey's Lake Van Basin. The Sc, which were ovoid or spheroid and white or cream in colour, were found to vary in number between three and five among the examined fish. The glands were located in the caudal part of the kidney, and either partially or completely embedded, and found to be present on both the ventral and dorsal surface of either side of the caudal part of the kidney. The Sc were surrounded by a connective tissue capsule that penetrated and divided the gland into incomplete lobules. Two types of cells were determined in the parenchyma of the gland. Type-I cells were predominant throughout the parenchyma and larger than the second (type-II). In the type-I cells, the cytoplasm was observed as weakly or moderately eosinophilic with haematoxylin and eosin staining and weakly or moderately acidophilic with Mallory's triple staining. In the type-I cells, the cytoplasm exhibited weak to moderate periodic acid-Schiff staining and slight or uniform staining with aldehyde fuchsin. The type-II cells were round, had a darkly stained spherical nucleus and were dispersed among the type-I cells. They displayed no cytoplasmic staining with the abovementioned stains.     

Some Physicochemical Characteristics,Bioactive Content and Antioxidant Characteristics of Non-Sprayed Barberry (Berberis vulgaris L.) Fruits from Turkey

Increasing consumer demands for indigenous, non-sprayed with pesticides and less-known or “forgotten” fruits necessitate knowledge on their breeding, cultivation, biochemical content, harvesting and marketing. Anatolia is rich for wild edible fruit species and barberry is abundant throughout Anatolia. The aim of this study was to determine some important physicochemical characteristics, bioactive content and antioxidant capacity of fruits from nineteen promising barberry (Berberis vulgaris L.) genotypes grown in the Coruh valley, Northeastern Anatolia. The results indicated genotype-specific differences for most of the physicochemical characteristics, antioxidant capacity and the content of some bioactive compounds. Fruit mass ranged from 0.073 (‘Coruh-7’) to 0.267 g (‘Coruh-11’). Total phenolic content ranged from 2532 (‘Coruh-’) to 3719 mg GAE per liter fruit juice (‘Coruh-11’). The genotype ‘Coruh-12’ had the highest total monomeric anthocyanin content (1004 mg per liter fruit juice) as cyanidin-3-glucoside. The highest total antioxidant capacity was observed in fruits of ‘Coruh-8’ and ‘Coruh-9’ genotypes with all three antioxidant-determining methods. We conclude that the barberry fruits represent a good source of bioactive phytochemicals because of their high phenolic and anthocyanin contents.     

Determining home range,changes in habitat use with time,and the threats to an endangered freshwater turtle (Rafetus euphraticus) in Turkey

1. The Euphrates softshell turtle (Rafetus euphraticus) is the most threatened chelonian species in the Middle East, where it is endemic to the Tigris and Euphrates basins. Since the ecology of this species is little known, it is difficult to plan any reliable action for its correct management and conservation.
2. To enhance the scientific knowledge on R. euphraticus, and to establish a science-based management strategy, a detailed investigation was undertaken on the distribution, habitat, activity and home range of R. euphraticus in Turkey. The previous distribution records in Turkey are for the 1990s; thus, this study is the first comprehensive field research on the species after nearly 3 decades.
3. There was a significant sexual size dimorphism in the Turkish population, with males larger than females.
4. Four individuals were radiotracked for 1 year. The mean home range was highly variable depending on how it was calculated, but that of males was considerably greater than that of females by all methods used.
5. A quantitative evaluation was made of habitat change with time. The land cover classes potentially available to turtles in the Euphrates River basin increased by more than 100% between the 1990s and 2018: 92% of this enhancement was derived from water bodies and coastal lands.
6. Fifteen dams have been built in the lower part of the basins in the last 30 years. In addition, continuing human interactions have caused the fragmentation or destruction of suitable habitats for R. euphraticus.
7. The factors threatening R. euphraticus were assessed and a conservation action plan was developed. Some objectives such as monitoring and creating awareness of this action plan have been met while others are still waiting to be achieved.

     

Genetic and morphologic diversity of <Emphasis Type="Italic">Echinochloa crus-galli</Emphasis> populations from different origins

Echinochloa crus-galli (L.) P. Beauv. (barnyardgrass) is an annual weed that is native to Asia and found throughout the world. The broad ecological tolerance and competitive ability of E. crus-galli makes it the most important weed species in rice. Genetic studies of plants are becoming increasingly common because reliable information is necessary to better understand population dynamics, occurrence of herbicide resistance, and demographic data. Echinochloa crus-galli populations from 34 different locations in Turkey were compared with respect to morphological differences and genetic variation. For morphological variation, five seeds of each population were sown in pots and grown in a screenhouse using a randomized block design. Morphological parameters such as germination speed, flowering time, leaf area, plant height, spikelet length, above-ground biomass, root dry weight and number of seeds were measured. Distinct differences among populations with respect to hierarchical cluster analysis were observed. Genetic variations among populations were performed using random amplified polymorphic DNA (RAPD) markers. The seven RAPD primers amplified 55 bands whose molecular weight varied between 200 and 4000 bp. The percentage of polymorphic bands was 74.54%. Results showed high morphological and genetic variability among individual genotypes within geographic locations. Phenotypic and genetic variability among E. crus-galli populations would be influenced by agricultural practices, crop characteristics, geographic location and herbicide pressure. Differences between weed populations may affect response to chemical or biological control.     

In vitro and in vivo antifungal activity of synthetic pure isothiocyanates against Sclerotinia sclerotiorum

BACKGROUND: Isothiocyanates (ITCs) released by the enzymatic hydrolysis of glucosinolates in the Brassicaceae are potentially useful for controlling fungal pathogens. In vitro activity of pure ITCs against Sclerotinia sclerotiorum (Lib.) de Bary was studied by adding them to glass filters in petri dishes and dissolving them in the growing media. RESULTS: Methyl, allyl and benzyl ITCs were the most fungitoxic of the compounds in bioassays with S. sclerotiorum isolate Ss31. In the volatile phase, mycelial growth was completely inhibited by these three compounds. Aromatic ITCs were less toxic in the petri dishes but were more toxic than aliphatic ITCs when dissolved in the agar. Benzyl ITC exhibited the highest inhibitory effect on sclerotial germination, with an EC₅₀ value of 75.1 µmol L^?1. Butyl and benzyl ITCs reduced apothecial production of S. sclerotiorum by 92.5% at the highest concentration. In in vivo assay, only allyl and 2‐phenylethyl ITCs reduced disease incidence (by 76.7 and 70% respectively) at low concentrations. CONCLUSION: Sclerotinia sclerotiorum in the soil might be suppressed by the higher concentrations of allyl and benzyl ITCs released from decomposition of Brassica juncea, B. carinata, B. nigra and Sinapis spp. Copyright © 2011 Society of Chemical Industry     

Rates of decomposition of plant residues and available nitrogen in soil, related to residue composition through simulation of carbon and nitrogen turnover

The dynamics of inorganic N in soil following the application of plant residues depends on their composition. We assumed that all plant materials are composed of similar components, each decomposing at a specific rate, but differ in the proportions of the various components. The NCSOIL model that simulates C and N turnover in soil was used to link the rates of residue decomposition to their composition, defined as soluble, cellulose-like and lignin-like C and N, and thereby integrate short and long-term effects of residues on available N dynamics in soil. Five plant residues in a wide range of C:N ratios were incubated in soil for 24 weeks at 30 °C, during which C and N mineralization were measured. The materials with large C:N ratios (corn, rice hulls and wheat straw) were also incubated with NH₄⁺-N to avoid N deficiency. The residues were analyzed for total and soluble C and N. The partitioning of insoluble C and N between cellulose- and lignin-like pools was optimized by best fit of simulated C and N mineralization to measured results. The decomposition rate constants of the soluble and lignin-like pools were assumed to be 1.0 and 10⁻⁵ d⁻¹, respectively, and that of the cellulose-like pool, obtained by model optimization against mineralization of cellulose with NH₄⁺-N in soil, was 0.051 d⁻¹. The optimized, kinetically defined lignin-like pool of all residues was considerably larger than lignin contents normally found in plant residues by the Van Soest procedure. Gross N mineralization of tobacco and rape residues was similar, but N recovery from tobacco was larger, because a larger fraction of its C was in the lignin-like pool. N in rice hulls, corn and wheat residues was mostly recalcitrant, yet rice hulls did not cause N deficiency, because most of its C was recalcitrant too. The soluble components of the residues had strong short-term effects on available N in soil, but the cellulose-like pool was equally important for short and medium-term effects. Soluble and cellulose-like C were 29 and 42% of total C, respectively, in corn and 7 and 50% in wheat. Maximal net inorganic N losses, measured in both residue treatments after 2 weeks, were 42 mg g⁻¹ C applied as corn and 31 mg g⁻¹ C applied as wheat, or 84 and 110 mg g⁻¹ decomposed C of corn and wheat, respectively. Rice hulls immobilized N slowly, but by the end of 24 weeks all three residues immobilized 26-27 mg N kg⁻¹ C applied. The different dynamics of N immobilization demonstrated the need to determine the decomposability of C and N rather than their total contents in plant residues.     

Closing the nitrogen use efficiency gap and reducing the environmental impact of wheat-maize cropping on smallholder farms in the Guanzhong Plain,Northwest China

A high crop yield with the minimum possible cost to the environment is generally desirable. However, the complicated relationships among crop production, nitrogen (N) use efficiency and environmental impacts must be clearly assessed. We conducted a series of on-farm N application rate experiments to establish the linkage between crop yield and N₂O emissions in the Guanzhong Plain in Northwest China. We also examined crop yield, partial factor productivity of applied N (PFPN) and reactive N (Nr) losses through a survey of 1 529 and 1 497 smallholder farms that grow wheat and maize, respectively, in the region. The optimum N rates were 175 and 214 kg ha^–1 for winter wheat and summer maize, respectively, thereby achieving the yields of 6 799 and 7 518 kg ha^–1, correspondingly, with low N₂O emissions based on on-farm N rate experiments. Among the smallholder farms, the average N application rates were 215 and 294 kg ha^–1 season^–1, thus producing 6 490 and 6 220 kg ha^–1 of wheat and maize, respectively. The corresponding PFPN values for the two crops were 36.8 and 21.2 kg N kg^–1, and the total N₂O emissions were 1.50 and 3.88 kg ha^–1, respectively. High N balance, large Nr losses and elevated N₂O emissions could be explained by the overdoses of N application and low grain yields under the current farming practice. The crop yields, N application rates, PFPN and total N₂O for wheat and maize were 18 and 24% higher, 42 and 37% less, 75 and 116% higher, and 42 and 47% less, correspondingly, in the high-yield and high-PFPN group than in the average smallholder farms. In conclusion, closing the PFPN gap between the current average and the value for the high-yield and high-PFPN group would increase crop production and reduce Nr losses or the total N₂O emissions for the investigated cropping system in Northwest China.     

A Comparison Investigation on Antioxidant Activities,Physicochemical Properties and Phytochemical Contents of Kiwifruit Genotypes and Cultivars

The present work was conducted to find the physicochemical properties, chemical components and antioxidant capacity of kiwifruit hydroalcoholic extracts (B-31, HO-1-14, J-242, Bruno, Greenlight, Hayward, Monty, Topstar) grown Yalova, Turkey. Phytochemical tests were performed to determine total phenolic, flavonoid and ascorbic acid. Moreover, the kiwifruit extracts were subjected to evaluate their antioxidant potential using different in vitro assays such as total antioxidant, inhibition of lipid peroxidation, reducing power, metal chelating, free radical, H₂O₂ and superoxide anion scavenging activities at 50–500 μg mL^?1, and also found EC₅₀ and IC₅₀ values. The soluble solid content (SSC), titratable acidity (TA) and pH were analyzed in all the genotypes and cultivars. The highest total phenolic, flavonoid and ascorbic acid content were found in J-242 (89.53 mg GAE/100 g), J-242 (109.13 mg QE/100 g) and HO-1-14 (64.15 mg/100 g), respectively. The linoleic, palmitic, stearic and oleic acid methyl esters were detected in all kiwifruit extracts by GC/MS. Significant differences were found between genotypes and cultivars in the antioxidant tests. The extracts showed high inhibition of lipid peroxidation and compared to standards, significantly (p < 0.05). The GC/MS analyses confirmed quantitative variability in the antioxidant profiles. The SSC, TA and pH of kiwifruit genotypes and cultivars showed a moderate level. The key parameters for the most active kiwifruit included the following: total antioxidant activity for B-31, H₂O₂ scavenging activity for J-242 and metal chelating activity for Topstar. In conclusion, this study exhibited the important role played by the genotypes and cultivars background on the chemical content and antioxidant profiles.     

Effects of recombinant interferon-gamma on cytokine secretion from monocyte-derived macrophages infected with Salmonella typhi

Salmonella typhi (S. typhi) is an important pathogen which causes typhoid fever. The cytokines released from the macrophages, playing a role in the host defense against Salmonella infection, are crucial in the defense against the infection. IFN-γ provides a protection against Salmonella infection by developing macrophage activation in different mechanisms. This study was designed to investigate the effect of the recombinant IFN-γ (rIFN-γ) on the cytokines secreted from S. typhi stimulated macrophages. Macrophage isolation was done in the heparinized blood samples obtained from healthy people, and following the priming with rIFN-γ for 72 h the cells were stimulated by S. typhi and then the cytokine levels in culture supernatants were determined by enzyme-linked immunosorbent assay. It was observed that rIFN-γ reversely increased the levels of IL-1, IL-2 the levels of which were decreased by S. typhi and that it increased TNF-α levels while suppressing the levels of antiinflammatory cytokines such as IL-10 and TGF-β the levels of which were increased by S. typhi. Consequently, rIFN was observed to increase protective Th1 response by affecting the secretion of cytokine during S. typhi infection and it was considered to be a good target especially to prevent and treat invasive Salmonella infections.