Pathotyping and antimicrobial susceptibility testing of Escherichia coli isolates from neonatal calves

Neonatal calf mortality is a major concern to livestock sector worldwide. Neonatal calf diarrhoea (NCD), an acute severe condition causes morbidity and mortality in calves. Amongst various pathogens involved in NCD, E. coli is considered as one of the major causes. The study was targeted to characterize E. coli isolates from neonatal calves for diarrhoeagenic Escherichia coli (DEC) types (pathotyping), antimicrobial resistance (AMR) profiling and to correlate with epidemiological parameters. From neonates, a total of 113 faecal samples were collected, out of that 308, lactose fermenting colonies were confirmed as E. coli. Pathotypable isolates (12.3%) were represented by STEC (6.1%), EPEC (2.9%), ETEC (1.9%), EAEC (0.9%) and EHEC (0.3%). Occurrence of STEC was more in non-diarrhoeic calves, whereas ETEC was observed more in diarrhoeic calves. EPEC occurrence was observed in both diarrhoeic and non-diarrhoeic calves. Fishers extract test showed no significant association for occurrence of DEC types to type of dairies, health status, species, breed, age and sex of neonatal calves. Two hundred and eighty isolates were tested for antimicrobial susceptibility. The isolates showed maximum resistance towards ampicillin (55.4%) followed by tetracycline (54.3%), while minimum resistance was observed towards meropenem (2.5%). Multidrug resistant E. coli isolates were found to be 139 (49.6%), and Extended-spectrum beta-lactamase (ESBL) producers were 120 (42.9%). DEC pathotypes like STEC, ETEC, EHEC and EAEC that are also multidrug resistant present in neonatal calves have zoonotic potential and hence are of public health significance.

     

Morpho-physio and anatomical characterization of the indigenous Himalayan crabapple: Malus baccata (L.) Borkh. (Rohru) and exotic Malus pumila Mill. for dwarfing traits

Genetic Resources and Crop Evolution - The wild Malus germplasm is considered as a gene reservoir for various biotic and abiotic stresses tolerance/resistance genes, including important novel...     

Increase in Growth,Productivity and Nutritional Status of Wheat (Triticum aestivum L.) and enrichment in Soil Microbial Population Applied with Biofertilizers Entrapped with Organic Matrix

To find effective alternatives to reduce the application of conventional urea (CU), a conventional biofertilizer (CB) preparation (charcoal mixed Azotobacter chroococcum and Bacillus subtilis) and the same biofertilizers entrapped in an organic matrix consisting of cow dung, rice bran, dried powder of neem leaves, and clay soil in 1:1:1:1 ratio and 25% (w/w) saresh (plant gum of Acacia sp.), named as super granules of biofertilizers (SGBF) were applied to cultivate wheat (Triticum aestivum L. cv. ‘WH-711’) in experimental plots. The results revealed that the efficacy of commercially available charcoal mixed biofertilizers could not prove as effective alternative to CU, whereas the same dose of biofertilizers entrapped in the organic matrix, SGBF, resulted in a significant increase in growth and productivity of wheat. It appears that SGBF prepared and applied in this study is an effective organic alternative to the urea for wheat cultivation in semi-arid subtropical agro-ecosystems.     

Increase in growth,productivity and nutritional status of rice (<Emphasis Type="Italic">Oryza sativa</Emphasis> L. cv. Basmati) and enrichment in soil fertility applied with an organic matrix entrapped urea

Field experiments were conducted to evaluate the effects of eco-friendly organic matrix entrapped urea (OMEU) on growth, productivity, and yield of rice (Oryza sativa L. cv. Basmati) and soil enrichment in the paddy field at Rohtak (Haryana) located near Delhi. The OMEU prepared in granular form contained cow dung, rice bran (grain cover of Oryza sativa), powder of neem leaves (Azadirachta indica), and clay soil (diameter of particles < 0.02 mm) in 1:1:1:1 ratios and saresh (plant gum of Acacia sp.) as binder along with half of the recommended dose of commercially available soluble urea (free urea; FU). Single basal application of OMEU showed an increase in plant growth in terms of fresh and dry weights, root length, root, leaf and tiller numbers, soluble protein, total N and ammonium in leaves, productivity in terms of grain and straw yield, and nutritional and microbial activities of field soil over free form of urea and no fertilizer application. Nutritional status of rice grains was also improved over the free urea and no fertilizer controls. Our data indicate that OMEU, which is low cost and based on bio-degradable, non-toxic, and locally available agro-waste, can be attempted to replace the conventional use of soluble urea in rice.     

Foliar fungal disease‐resistant introgression lines of groundnut (Arachis hypogaea L.) record higher pod and haulm yield in multilocation testing

Introgression lines (ILs) of groundnut with enhanced resistance to rust and late leaf spot (LLS) recorded increased pod and haulm yield in multilocation testing. Marker‐assisted backcrossing (MABC) approach was used to introgress a genomic region containing a major QTL that explains >80% of phenotypic variance (PV) for rust resistance and 67.98% PV for LLS resistance. ILs in the genetic background of TAG 24, ICGV 91114 and JL 24 were evaluated for two seasons to select 20 best ILs based on resistance, productivity parameters and maturity duration. Multilocation evaluation of the selected ILs was conducted in three locations including disease hot spots. Background genotype, environment and genotype × environment interactions are important for expression of resistance governed by the QTL region. Six best ILs namely ICGV 13192, ICGV 13193, ICGV 13200, ICGV 13206, ICGV 13228 and ICGV 13229 were selected with 39–79% higher mean pod yield and 25–89% higher mean haulm yield over their respective recurrent parents. Pod yield increase was contributed by increase in seed mass and number of pods per plant.     

Comparative Studies on the Role of Organic Biostimulant in Resistant and Susceptible Cultivars of Rice Grown under Saline Stress - Organic Biostimulant Alleviate Saline Stress in Tolerant and Susceptible Cultivars of Rice

Plants are sessile organisms that experience various abiotic stresses during their lifespan and try to adapt to these environmental stresses by manipulating their physiological, biochemical, cellular, and molecular mechanisms. Salinity is one of the important abiotic stress that affects the metabolism and physiology of plant cells that leads to serious damage to crops and productivity. We investigated the response of two contrasting (salt susceptible and tolerant) cultivars during saline stress by modulating its effect with the application of an important natural biostimulant panchagavya (PG). The results showed that the salinity stress greatly influenced and negatively affects the plant growth, biochemical attributes, and induces the expression of various genes in both cultivars. Furthermore, we assessed the effect of PG alone and by amending with NaCl to alleviate the saline stress which showed a significant enhancement of biochemical and physiological characteristics in both cultivars. Furthermore, we assessed the response of seven autophagy associated gene (ATG1, ATG3, ATG4, ATG6, ATG7, ATG8, and ATG9), BAX Inhibitor -1 (BI-1), Mitogen activated Protein Kinase–1 (MAPK-1), WRKY53, Catalase -1 (CAT-1), Superoxide Dismutase (SOD), and Glutathione Peroxidase (GPX) genes in rice that displayed the differential expression pattern during saline stress in both cultivars. We concluded that saline stress can be manipulated by the application of PG and positively regulate the physiological, biochemical, and gene expression response in salt-susceptible and -tolerant rice cultivars. Furthermore, the current study also suggested that salinity is a mutifactorial and multigenic response. Autophagy and programmed cell death regulated along with salinity and was helpful in adapting the tolerance against the stress condition.     

Improvement in the diagnosis of <Emphasis Type="Italic">Brucella abortus</Emphasis> infections in naturally infected water buffaloes (<Emphasis Type="Italic">Bubalus bubalis</Emphasis>) using an ELISA with a Protein-G-based indicator system

Brucellosis caused by Brucella abortus in domestic water buffaloes (Bubalus bubalis) raised under the traditional system of husbandry in northern India was diagnosed using an enzyme-linked immunosorbent assays (ELISA) with a Protein-G-based indicator system (Protein-G ELISA). A total of 1,551 animals that are positive (N = 61), negative (N = 243), and suspected (N = 1,247) for brucellosis were examined. Rose bengal test (RBT) was used to predict the disease, and accordingly, animals were dichotomized in positive and negative population for receiver operating characteristic (ROC) curve analysis to determine the sensitivity, the specificity, and the performance index of Protein-G ELISA. Taking all animals (N=1551) into account, the ROC curve analysis revealed cut off value of 29.6% positivity (%P) with 98.40% and 94.94%, sensitivity and specificity, respectively. The results were compared with ELISA in which anti-bovine conjugate was used. The cut off in ELISA was 37.9%P and sensitivity and specificity were 96.26% and 97.07%, respectively. The performance indexes of both the assays were almost equal and were 193.34 for Protein-G ELISA and 193.33 for ELISA. The cut off values of both the tests changed, if only known positive (N = 61) and known negative (N=243) animals were used for ROC curve analysis, and accordingly, changes in sensitivity and specificity were observed with significant decrease of performance indexes of both the tests. The high optical density (P<0.0001) background signal with negative serum control and high %P (P<0.0001) in sera from negative population were noticed in ELISA in comparison to Protein-G ELISA.     

Carbon and water footprints of major crop production in India

Scarcity of water and emission of greenhouse gases (GHGs) are the two key environmental issues affecting crop production in India.Reducing the carbon footprint (CF) and water footprint (WF) of crop production can help to mitigate the environmental hazards that stem from GHG emissions and water scarcity.The CFs and WFs of three major cereal crops,rice,wheat,and maize,were estimated for the year 2014 under the environmental conditions in India,based on national statistics and other data sources.To...     

Biodiversity, current developments and potential biotechnological applications of phosphorus-solubilizing and -mobilizing microbes: A review

As one of the most important and essential macronutrients next to nitrogen,phosphorus(P)is important for plant development,but it is the least mobile nutrient element in plant and soil.Globally,P is mined from geological sediments and added to agricultural soils so as to meet the critical requirements of crop plants for agronomic productivity.Phosphorus exists in soil in both organic and inorganic forms.The various inorganic forms of the element in soil are salts with calcium,iron,and aluminum,whereas the organic forms come from decaying vegetation and microbial residue.There is a huge diversity of plant microbiomes(epiphytic,endophytic,and rhizospheric)and soil microbiomes that have the capability to solubilize the insoluble P and make it available to plant.The main mechanism for the solubilization of inorganic P is by the production of organic acids,which lowers soil pH,or by the production of acid and alkaline phosphatases,which causes the mineralization of organic P.The P-solubilizing and-mobilizing microorganisms belong to all three domains,comprising archaea,bacteria,and eukarya.The strains belonging to the genera Arthrobacter,Bacillus,Burkholderia,Natrinema,Pseudomonas,Rhizobium,and Serratia have been reported as efficient and potential P solubilizers.The use of P solubilizers,alone or in combination with other plant growth-promoting microbes as an eco-friendly microbial consortium,could increase the P uptake of crops,increasing their yields for agricultural and environmental sustainability.