Real-time RT-qPCR assay to detect sequences in the Piscine orthoreovirus-1 genome segment S1 associated with heart and skeletal muscle inflammation in Atlantic salmon

During the last decade, Piscine orthoreovirus was identified as the main causative agent of heart and skeletal muscle inflammation (HSMI) in Atlantic Salmon, Norway. A recent study showed that PRV-1 sequences from salmonid collected in North Atlantic Pacific Coast (NAPC) grouped separately from the Norwegian sequences found in Atlantic Salmon diagnosed with HSMI. Currently, the routine assay used to screen for PRV-1 in NAPC water and worldwide cannot differentiate between the two groups of PRV-1. Therefore, this study aimed at developing a real-time polymerase chain reaction (RT-qPCR) assay to target the PRV-1 genome segments specific for variants associated with HSMI. The assay was optimized and tested against 71 tissue samples collected from different regions including Norway, Chile and both coast of Canada and different hosts farmed Atlantic Salmon, wild Coho Salmon and escaped Atlantic Salmon collected in British Columbia, West Coast of Canada. This assay has the potential to be used for screening salmonids and non-salmonids that may carry PRV-1 potentially causing HSMI.     

Cf-2/Rcr3pim番茄品系对南方根结线虫的抗性测定

Cf-2/Rcr3~(pim)基因型番茄不仅能够抵御番茄叶霉菌的侵染,而且对马铃薯金线虫的寄生也有一定的抑制效果。为挖掘根结线虫的新抗性资源,本研究采用室内人工接种法测定了Cf-0/Rcr3~(pim)、Cf-2/Rcr3-3和Cf-2/Rcr3~(pim)基因型番茄品系对南方根结线虫的抗感性。抗性评价结果显示,Cf-0/Rcr3~(pim)品系对南方根结线虫表现高感,Cf-2/Rcr3-3品系为中感,而Cf-2/Rcr3~(pim)品系则为感病。与Cf-0/Rcr3~(pim)和Cf-2/Rcr3-3基因型相比,Cf-2/Rcr3~(pim)基因型番茄品系虽然对南方根结线虫侵染的敏感性略低,但是不能阻止线虫在根系上的大量繁殖,不适于根结线虫的防控应用。     

Prevalence,geographic distribution and phenotypic differences of Piscirickettsia salmonis EM‐90‐like isolates

Early reports accounted for two main genotypes of Piscirickettsia salmonis, a fish pathogen and causative agent of piscirickettsiosis, placing the single isolate EM‐90 apart from the prototypic LF‐89 and related isolates. In this study, we provide evidence that, contrary to what has been supposed, the EM‐90‐like isolates are highly prevalent and disseminated across Chilean marine farms. Molecular analysis of 507 P. salmonis field isolates derived from main rearing areas, diverse hosts and collected over 6 years, revealed that nearly 50% of the entire collection were indeed typed as EM‐90‐like. Interestingly, these isolates showed a marked host preference, being recovered exclusively from Atlantic salmon (Salmo salar) samples. Although both strains produce undistinguishable pathological outcomes, differences regarding growth kinetics and susceptibility to the antibiotics and bactericidal action of serum could be identified. In sum, our results allow to conclude that the EM‐90‐like isolates represent an epidemiologically relevant group in the current situation of piscirickettsiosis. Based on the consistency between genotype and phenotype exhibited by this strain, we point out the need for genotypic studies that may be as important for the Chilean salmon industry as the continuous surveillance of antimicrobial susceptibility patterns.     

Comparative functional responses of native and high‐impacting invasive fishes: impact predictions for native prey populations

Comparative functional responses (FRs) can predict impacts of invasive species, including piscivorous fishes, via quantifying their depletion of native food resources as a function of prey density. The utility of FRs for predicting impacts on prey populations by invasive fishes of different trophic guilds was tested here by comparing the FRs of the invaders Cyprinus carpio and Carassius auratus, with three native, trophically analogous fishes, Barbus barbus, Squalius cephalus and Tinca tinca. Chironomid larvae and Gammarus pulex were used as prey items. Predictions, developed from studies on the foraging of C. carpio and C. auratus in the literature, were that the invaders would have significantly higher consumption rates for chironomids than the native fishes, but not for G. pulex. Mean consumption rates for chironomids were significantly lower for both invaders than B. barbus and S. cephalus, but were similar to T. tinca. Barbus barbus had a significantly lower consumption rate of G. pulex than both invaders, but there were no significant differences between S. cephalus, T. tinca and the invaders. All FRs were type II, with FR curves for the invaders preying upon chironomids never being significantly higher than the native fishes, contrary to predictions. For G. pulex, some significant differences were apparent between the invaders and native fishes, but again were contrary to predictions. These results indicated that when predation impacts of invasive fishes could also be a function of their population density and body sizes, these parameters should be incorporated into FR models to improve impact predictions.     

Screening of diverse cassava genotypes based on nitrogen uptake efficiency and yield

As one of the top three tuber crops of the world, cassava is a staple food and feed crop for tropical and subtropical regions. Because of its high drought resistance and tolerance to nutrient deficiency, cassava is usually cultivated on hilly areas that are nutrient-poor. Nitrogen(N) is one of the significant factors affecting cassava yield. A double factorial(N level×genotypes) split-plot field experiment was conducted to analyze differences in yield and N accumulation of 25 cassava genotypes under low-N conditions to screen for cassava genotypes with high-N efficiency. The two-year field experiment showed that cassava yield and N accumulation are determined by specific genotypes, soil N levels, and year. Among these factors, soil N levels are the main factors that are responsible for differences in cassava yield. When yield and relative N accumulation under low-N conditions were used as screening markers, we identified an efficient and responsive genotype(SC10), and two inefficient and non-responsive genotypes(SC205 and GR5). The efficient and responsive genotype and the inefficient and non-responsive genotype can be used as study materials to further reveal the mechanisms for high-N efficiency in cassava.     

A Comparison Investigation on Antioxidant Activities,Physicochemical Properties and Phytochemical Contents of Kiwifruit Genotypes and Cultivars

The present work was conducted to find the physicochemical properties, chemical components and antioxidant capacity of kiwifruit hydroalcoholic extracts (B-31, HO-1-14, J-242, Bruno, Greenlight, Hayward, Monty, Topstar) grown Yalova, Turkey. Phytochemical tests were performed to determine total phenolic, flavonoid and ascorbic acid. Moreover, the kiwifruit extracts were subjected to evaluate their antioxidant potential using different in vitro assays such as total antioxidant, inhibition of lipid peroxidation, reducing power, metal chelating, free radical, H₂O₂ and superoxide anion scavenging activities at 50–500 μg mL^?1, and also found EC₅₀ and IC₅₀ values. The soluble solid content (SSC), titratable acidity (TA) and pH were analyzed in all the genotypes and cultivars. The highest total phenolic, flavonoid and ascorbic acid content were found in J-242 (89.53 mg GAE/100 g), J-242 (109.13 mg QE/100 g) and HO-1-14 (64.15 mg/100 g), respectively. The linoleic, palmitic, stearic and oleic acid methyl esters were detected in all kiwifruit extracts by GC/MS. Significant differences were found between genotypes and cultivars in the antioxidant tests. The extracts showed high inhibition of lipid peroxidation and compared to standards, significantly (p < 0.05). The GC/MS analyses confirmed quantitative variability in the antioxidant profiles. The SSC, TA and pH of kiwifruit genotypes and cultivars showed a moderate level. The key parameters for the most active kiwifruit included the following: total antioxidant activity for B-31, H₂O₂ scavenging activity for J-242 and metal chelating activity for Topstar. In conclusion, this study exhibited the important role played by the genotypes and cultivars background on the chemical content and antioxidant profiles.     

苗期甘蔗氮高效基因型评价指标的筛选

本研究通过低氮压力选择,筛选出甘蔗氮高效种质,分析影响甘蔗氮高效的重要指标,为甘蔗氮高效育种及栽培提供理论依据。以58份甘蔗种质资源为材料,在苗期采用正常供氮（2 mmol/L N）和低氮（0.2 mmol/L N）处理,分析甘蔗植株形态、干重及氮素在各器官中累积分配的特征。通过主成分分析方法筛选影响甘蔗氮高效利用的重要指标,通过聚类分析对58份种质进行聚类。结果表明,低氮（0.2 mmol/L N）处理可以明显从植物形态区分不同种质的氮利用差异,58份种质低氮条件下的干重范围为0.64~14.75 g/株,氮累积量为5.53~63.00 mg/株,氮利用率范围为115.40~279.30 g/g。对低氮压力下甘蔗干重及氮累积等25个指标进行主成分分析后,提取出4个主要成分,总贡献率为92.35%。通过高、低氮条件下与氮利用效率有关的氮转移系数及基因潜力等19个指标分析后提取出5个主成分,总贡献率为82.21%。影响甘蔗氮高效的重要指标有甘蔗的干重（全株、叶、根）、氮累积量（全株、叶、茎）、氮利用率（全株、叶）、叶的相对氮利用率、茎的基因潜力、茎的相对干物质量和茎的相对氮累积量。经聚类分析后初步将58份甘蔗种质分为氮高效基因型、偏氮高效基因型、偏氮低效基因型和氮低效基因型。     

Variation and heritability of morphological and physiological traits among Leymus chinensis genotypes under different environmental conditions

Intraspecific trait variation and heritability in different environmental conditions not only suggest a potential for an evolutionary response but also have important ecological consequences at the population, community, and ecosystem levels. However, the contribution of quantitative trait variation within a grassland species to evolutionary responses or ecological consequences is seldom documented. Leymus chinensis is an important dominant species in semi-arid grasslands of China, which has seriously suffered from drought and high temperature stresses in recent decades. In the present study, we measured variation and heritability of 10 quantitative traits, namely the number of tillers, maximum shoot height, number of rhizomes, maximum rhizome length, rhizome mass, aboveground mass, root mass, maximum net photosynthetic rate(Pmax), specific leaf area(SLA), and leaf length to leaf width ratio(LL/LW), for 10 genotypes of L. chinensis under one non-stress(Ck) condition and three environmental stress conditions(i.e., drought(Dr), high temperature(Ht), and both drought and high temperature(DrHt)). Result indicated that(1) the interaction of genotype and environmental condition(G×E) was significant for 6 traits but not significant for the other 4 traits as shown by two-way analysis of variance(ANOVA), suggesting that different selection forces were placed for different traits on the factors dominating phenotypic responses to different environmental conditions. Moreover, these significant G×E effects on traits indicated significantly different phenotypic adaptive responses among L. chinensis genotypes to different environmental conditions. Additionally, individuals could be grouped according to environmental condition rather than genotype as shown by canonical discriminant analysis, indicating that environmental condition played a more important role in affecting phenotypic variation than genotype;(2) by one-way ANOVA, significant differences among L. chinensis genotypes were found in all 10 traits under Ck and Dr conditions, in 8 traits under Dr Ht condition and only in 4 traits under Ht condition; and(3) all 10 traits showed relatively low or non-measurable broad-sense heritability(H_2) under stress conditions. However, the lowest H_2 value for most traits did not occur under DrHt condition, which supported the hypothesis of 'unfavorable conditions have unpredictable effects' rather than 'unfavorable conditions decrease heritability'. Results from our experiment might aid to improve predictions on the potential impacts of climate changes on L. chinensis and eventually species conservation and ecosystem restoration.     

异色瓢虫两个单倍体基因型的生物学特性比较

势单倍型异色瓢虫生物学特性的差异，在室内条件下以豌豆修尾蚜Megoura japonica（Matsumura）为食物，观察这两个单倍型的幼虫期死亡率和发育历期、雌成虫终身产卵量和卵孵化率等生物学参数。结果表明，单倍型-I和单倍型-Ⅱ的幼虫发育历期差异显著，分别为14.38和13.75 d；单倍型-I在幼虫各龄期的死亡率均低于单倍型-Ⅱ，分别为13.33%和29.20%（1龄）、5.49%和13.75%（2龄）、1.16%和4.35%（3龄）、2.35%和10.61%（4龄）。单倍型-I和单倍型-Ⅱ的成虫终身产卵量无显著差异，分别为936粒和887粒；卵孵化率差异显著，单倍型-I的卵孵化率（64.53%）高于单倍型-Ⅱ（60.99%）。综合来看，异色瓢虫的两个单倍型在自然界存在数量差异的原因可能是其在生殖和发育上的差异造成的。