Real-time RT-qPCR assay to detect sequences in the Piscine orthoreovirus-1 genome segment S1 associated with heart and skeletal muscle inflammation in Atlantic salmon

During the last decade, Piscine orthoreovirus was identified as the main causative agent of heart and skeletal muscle inflammation (HSMI) in Atlantic Salmon, Norway. A recent study showed that PRV-1 sequences from salmonid collected in North Atlantic Pacific Coast (NAPC) grouped separately from the Norwegian sequences found in Atlantic Salmon diagnosed with HSMI. Currently, the routine assay used to screen for PRV-1 in NAPC water and worldwide cannot differentiate between the two groups of PRV-1. Therefore, this study aimed at developing a real-time polymerase chain reaction (RT-qPCR) assay to target the PRV-1 genome segments specific for variants associated with HSMI. The assay was optimized and tested against 71 tissue samples collected from different regions including Norway, Chile and both coast of Canada and different hosts farmed Atlantic Salmon, wild Coho Salmon and escaped Atlantic Salmon collected in British Columbia, West Coast of Canada. This assay has the potential to be used for screening salmonids and non-salmonids that may carry PRV-1 potentially causing HSMI.     

Do lethal trap devices threaten foot-hold trap capture efficacy?

Foot-hold trapping is an important tool used in pest management programs in countries such as Australia, New Zealand and in North America. Research on humane trapping methods including the addition of sedatives (Tranquilizer Trap Device) and toxins (Lethal Trap Device) to foot-hold traps to improve the welfare of trapped pest animals is important. Lethal Trap Devices (LTD) are being tested in Australia to determine if deploying a toxin with a foot-hold trap is effective at delivering a lethal dose of toxin to trapped predators. This study aimed to test whether fitting an LTD to two different foot-hold jaw traps (Victor Soft catch #3 and Bridger #5) would affect the jaw closure time and as such affect capture rates. We found that two spring Victor Soft catch traps were faster (20.91, SD 0.72 ms) than four spring Bridger #5 traps (26.79, SD 0.48 ms) even when fitted with a Lethal Trap Device. Fitting a Lethal Trap Device to either of these trap models did not affect closure time and as such would not have any effect on capture efficacy.     

EARLY POSTOPERATIVE MAGNETIC RESONANCE IMAGING FINDINGS IN FIVE DOGS WITH CONFIRMED AND SUSPECTED BRAIN TUMORS

Early postoperative neuroimaging has been performed in people for over 20 years to detect residual brain tumor tissue and surgical complications. The purpose of this retrospective study was to describe characteristics observed using early postoperative magnetic resonance imaging in a group of dogs undergoing craniotomy for brain tumor removal. Two independent observers came to a consensus opinion for presence/absence of the following MRI characteristics: residual tumor tissue; hemorrhage and ischemic lesions; abnormal enhancement (including the margins of the resection cavity, choroid plexus, meninges) and signal intensity changes on diffusion‐weighted imaging. Five dogs were included in the study, having had preoperative and early postoperative MRI acquired within four days after surgery. The most commonly observed characteristics were abnormal meningeal enhancement, linear enhancement at margins of the resection cavity, hemorrhage, and a thin rim of hyperintensity surrounding the resection cavity on diffusion‐weighted imaging. Residual tumor tissue was detected in one case of an enhancing tumor and in one case of a tumor containing areas of hemorrhage preoperatively. Residual tumor tissue was suspected but could not be confirmed when tumors were nonenhancing. Findings supported the use of early postoperative MRI as a method for detecting residual brain tumor tissue in dogs.     

The ecological sustainability of tropical forest management: evaluation of the national forest management standards of Costa Rica and Nicaragua, with emphasis on the need for adaptive management

From a conceptual point of view, national forest management standards in Latin American countries have progressed significantly in recent years. Examples include the Costa Rican Standards and Procedures for Sustainable Forest Management and Certification, developed by the National Commission for Forest Certification and in Nicaragua, the National Institute of Forestry proposal of principles, criteria and indicators for sustainable forest management. In line with general approaches worldwide, these national standards primarily focus on the fulfillment of sound forest practice. There is comparatively little emphasis on the assessment of management outcomes or changes in key components of the eco- and social-systems that result from management impacts. Essentially, there is little emphasis on adaptive management, though arguments that management cannot be sustainable if it is not adaptive are persuasive. This study sought to contribute to the development of standards that include elements for adaptive management that define, communicate and evaluate sustainable forest management in Costa Rica and Nicaragua. Elements from the national standards and the CIFOR generic C&I template (predominantly focused on forest management outcomes) were used as a starting point. The basic research process consisted of three phases of evaluation (in-office, desk and field). The evaluations were carried out by multidisciplinary, international groups of experts in forest ecology, management and policy. This study demonstrated the value of forums and workshops that facilitate exchange between forest scientists and policymakers; the innovation and application of a practical, applicable and scientifically based methodology for developing national level C&I; and acceptance of this methodology by key players in the fields of forest management and policy. These experiences and the resulting proposals of C&I for the evaluation of ecologically sustainable forest management are expected to be used as points of reference for future development of forest policy in Costa Rica and Nicaragua, and to contribute to the overall understanding of C&I development processes in the region.     

Effect of Nitrogen Rate and the Environment on Physicochemical Properties of Selected High‐Amylose Rice Cultivars

Genetic marker haplotypes for the Waxy and alk genes are associated with amylose content and gelatinization temperature, respectively, and are used by breeders to develop rice cultivars that have physicochemical properties desired by the parboiling and canning industries. Cultivars that provide consistent processing quality across diverse production environments are important to the industry. This study determined if measures of processing quality differed among cultivars, fertility treatments, and production environments. Nine cultivars having high amylose content (>23.0%) but with different Waxy and alk haplotypes were evaluated in three environments and using three nitrogen fertility levels. Although environment and fertility levels significantly (P < 0.05) impacted protein content, gelatinization temperatures, and peak, trough, and final paste viscosities, cultivars performed consistently across production environments and fertility applications. Differences were observed among cultivars in paste viscosity measures and gelatinization temperatures that corresponded with their Waxy and alk haplotypes. However, discriminant analysis revealed subgroupings within the same Waxy and alk haplotypes that were primarily differentiated by trough paste viscosity. The results of this study demonstrated that although these high‐amylose cultivars had consistent ranking across environments and nitrogen fertility regimes, there were differences in rice processing quality traits that were not apparent from their Waxy and alk haplotypes.     

Intra-varietal variation for in vitro plant regeneration in the genus Trifolium

Summary Seedlings of Trifolium repens showed considerable variation with regard to the morphology and growth of their calli, and their ability for in vitro differentiation of shoots. One of the lines selected for regeneration in primary callus cultures also showed shoot formation from protoplasts. Somatic embryogenesis in callus cultures of T. pratense and T. arvense occurred only in selected seedling lines. This paper highlights the importance of screening a large number of plants within a cultivar of outbreeding species to achieve reproducible plant regeneration from tissue culture.     

Modified full-sib selection and best linear unbiased prediction of progeny performance in a European F2 maize population

Four cycles of modified recurrent full‐sib (FS) selection were conducted in an intermated F₂ population of European flint maize. The objectives of our study were to monitor trends across selection cycles in the estimates of population mean, inbreeding coefficients and variance components, and to investigate the usefulness of best linear unbiased prediction (BLUP) of progeny performance under the recurrent FS selection scheme applied. We used a selection rate of 25% for a selection index, based on grain yield and dry matter content. A pseudo‐factorial mating scheme was used for recombination. In this scheme, the selected FS families were divided into an upper‐ranking group of parents mated to the lower‐ranking group. Variance components were estimated with restricted maximum likelihood (REML). Average grain yield increased 1.2 t/ha per cycle, average grain moisture decreased 20.1 g/kg per cycle, and the selection index relative to the F₂ check entries decreased 0.3% per cycle. For a more precise calculation of selection response, the four cycles should be tested together in multi‐environmental trials. We observed a significant decrease in additive variance in the selection index, suggesting smaller future selection response. Predictions of FS family performance in Cn + 1 based on mean performance of parental FS families in Cn were of equal precision as those based on the mean additive genetic BLUP of their parents, and corresponding correlations were of moderate size for grain moisture and selection index.