抗条纹叶枯病基因STV11的功能性分子标记建立及粳型抗源筛选

条纹叶枯病是水稻(Oryza sativa L.)上最严重的病害之一。STV11是从籼稻Kasalath中鉴定的条纹叶枯病抗性基因,根据Kasalath型条纹叶枯病基因STV11 KAS6个碱基缺失的功能性多态性序列差异,设计基于PCR的功能性分子标记qstv11。利用此标记对299份试验材料[5份抗病品种、5份感病品种、41份辽宁省育种材料、17份日本粳型材料、142份秋光/七山占重组自交系(群体A)、85份笹锦/Habataki//笹锦回交重组自交系(群体B)、群体亲本4份]进行基因型分析并进行抗病性鉴定。结果表明,qstv11能够较好区分抗感基因型,而且在测试材料中与条纹叶枯抗性整体呈现共分离。41份辽宁材料中鉴定出含有STV11-R(抗)材料1份;日本粳型材料该位点均为STV11-S(感);群体A和B中分别筛选出粳稻背景STV11-R型材料24份和6份。     

Analysis on Target Genes with Mutation in microRNA of Blue-shelled Chicken and White Leghorn

The study was conducted to explore the potential different characters between Blue-shelled chicken and White leghorn.Global genome microRNA was combined the identified microRNA with complementary lab-predicted microRNA.Then the two breed chicken's SNP data got by GGRS were mapped to the microRNA and focused on SNP that deliberately located in mature-microRNA.Bioinformatics method was adopted for target prediction on microRNA which had SNPs.By further gene enrichment analysis,the study found these genes enriched in 22 GO terms,10 KEGG pathways,and 3 IPA important networks.And they enriched in traits which associated with growth,such as mTOR signaling pathways,Wnt signaling pathways,growth hormone receptor networks and insulin-like growth factor Ⅰ receptor networks.And they also enriched in some laying traits,such as oocyte meiotic signaling pathways and progesterone mature oocytes signaling pathways.The methods and the results might provide references for further studies.     

转Pi9抗稻瘟病基因水稻株系的比较转录组分析

【目的】在转录水平上解析Pi9基因介导的稻瘟病抗性调控机理,为培育抗病水稻品种提供理论依据。【方法】向水稻品种日本晴(NPB)及其转Pi9抗稻瘟病基因株系(NPB/Pi9)接种稻瘟菌。分别于接种后0 h、12 h、24 h、36 h提取叶组织样品,选取12503个水稻基因定制基因芯片,进行水稻基因转录组分析,并通过qRT-PCR对部分差异表达基因进行验证。【结果】NPB/Pi9在接种后12 h、24 h和36 h的基因表达量分别与其接种0 h表达量比较,共检测到7754个差异表达基因;相应地,感病水稻NPB在以上时间点共检测到7385个差异表达基因;在接种后36 h,NPB/Pi9的差异表达基因数目显著多于NPB。比较NPB/Pi9和NPB相同时间点的基因表达量,共获得4065个差异表达基因,其中接种后36 h的差异表达基因显著多于接种后0 h、12 h或24 h。因此,NPB/Pi9的稻瘟病防御反应更强烈。对NPB/Pi9与NPB相同时间点的差异表达基因进行GO和KEGG分析,细胞外区域、植物对刺激应答、转录调控、氧化还原、离子结合、次生代谢和植物激素相关的GO分类在接种后呈显著富集,苯丙氨酸代谢、类黄酮生物合成和植物激素信号途径的KEGG通路在接种后显著富集。与效应分子触发的免疫反应(ETI)相关的水杨酸信号途径、几丁质酶,以及与病原相关分子模式触发的免疫反应(PTI)相关的胞外区域、对刺激的应答、木质素合成等,均在抗感水稻之间差异表达。而且PTI/ETI共有的WRKY转录因子、MAPK激酶、茉莉酸和乙烯信号途径等发生差异表达。综上所述,NPB/Pi9和NPB的差异表达模式与ETI和PTI相关,两者相互联系并在Pi9介导的稻瘟病抗性中发挥作用。【结论】与日本晴比较,抗病基因型NPB/Pi9对稻瘟病防御反应更强烈。转录因子、激酶、NBS-LRR基因、几丁质酶、水杨酸、茉莉酸和乙烯信号途径,以及植物次生代谢在Pi9介导的稻瘟病抗病反应中发挥重要作用。     

油料作物油脂合成调控研究进展

植物油脂不仅是人类可食用油的主要来源,也是人类生产生活中重要的可再生原料。本文概述了植物油脂的生物合成途径,从母体效应、QTL、GWAS等多个方面总结了油料作物油脂合成的遗传学研究进展,同时探讨了已知的油脂合成调控相关基因的功能。本文综述了该领域的研究现状,为深入了解油料作物油脂合成调控网络提供了参考,也为油料作物的分子改良和遗传育种提供了理论基础。     

施肥对复垦土壤微生物代谢功能与苗期玉米生长的影响

利用Biolog-ECO技术、WinRHIZO扫描仪及其图像分析技术，研究了对照CK（施肥量为0）、施复合肥F（施肥量为600 kg·hm^-2）、施有机肥O（施肥量为7 500 kg·hm^-2）、有机无机肥配施OF（施肥量为复合肥300 kg·hm^-2+有机肥3 750 kg·hm^-2）处理下煤矸石复垦区土壤微生物群落代谢功能及苗期玉米根系形态等特征，结果表明：不同施肥处理下煤矸石复垦区土壤微生物群落功能多样性差异显著，OF处理下土壤微生物多样性Shannon-wiener指数与Simpson指数最高，分别为3.22和0.96， Eveness指数最低，为0.21，而CK处理与之相反，Shannon-wiener指数与Simpson指数最低，分别为3.07和0.95，Eveness指数最高，为0.23；影响该区域土壤微生物群落代谢功能多样性的关键碳源包括6种氨基酸（L-精氨酸、L-天冬酰胺酸、L-苯基丙氨酸、L-丝氨酸、L-苏氨酸、甘氨酰-L-谷氨酸)、4种酯（D-半乳糖酸γ内酯、丙酮酸甲酯、吐温40、吐温80）、1种胺（腐胺）、5种酸（D-半乳糖醛酸、2-羟苯甲酸、4-羟基苯甲酸、r-羟基丁酸、D-苹果酸）、3种糖（-甲基D-葡萄糖苷、葡萄糖-1-磷酸盐、a-环状糊精）、3种醇（I-赤藻糖醇、D,L-a-甘油、D-甘露醇）；OF处理下玉米根系形态参数如根长、根体积、根系分形维数及玉米生物性状如生物量、茎粗、株高等与CK处理差异最为显著，说明OF处理有利于煤矸石复垦土壤质量的恢复与提高，利于煤矸石复垦区玉米生长。     

Regional and temporal differentiation of virulence phenotypes of Puccinia triticina from common wheat in Russia during the period 2001–2018

Leaf rust, caused by the fungus Puccinia triticina, is one of the most damaging rust diseases of wheat in Russia. Populations of P. triticina were monitored in seven regions of Russia from 2001 to 2018, with a total of 5,191 single urediniospore isolates from bread wheat (Triticum aestivum) being analysed. Populations have changed significantly in all regions since 2012, after 2 years of drought (2010–2011). Regional collections of P. triticina were also significantly different between the two periods 2001–2009 and 2012–2018, with changes along two geographic gradients from West Siberia to the north-west and south-west (North Caucasia) of the European part of Russia. All tested isolates were avirulent to resistance gene Lr9 in 2001–2009 but, since 2010, virulence to Lr9 has occurred and annually increased in the Asian part of Russia (Ural and West Siberia) due to deployment of cultivars with the Lr9 gene. Virulence to Lr2a and Lr15 was considerably lower in Dagestan (6%–33%) and all European regions (35%–67%) than in Asian regions (84%–96%). During 2001–2009, virulence on Lr1 was also lower in Dagestan (33%) and the European regions (50%–77%) than in Asia (91%–96%); however, by 2012–2018, nearly all isolates were virulent on Lr1. Remarkable changes were observed in frequencies of P. triticina races defined by their virulence/avirulence to Lr1 and Lr2a genes. We postulate the P. triticina population in Dagestan is specific to that area and pathogen populations in European and Asian parts of Russia are distinct.     

基于森林功能分区的经营小班划分研究

基于湖南省慈利县二类调查数据，根据森林主导功能的差异、森林林种种类和坡度的不同，将慈利县森林划分成不同的森林功能区，并基于森林功能区按照树种的不同将其进一步划分成不同的经营小班。最后，在地理信息系统的支持下绘制出森林功能分区图和经营小班划分图。结果表明，公益林的面积多于商品林的面积，其中特殊公益林区和一般公益林区面积为1 290 hm²，限制性商品林和一般性商品林面积为1 144 hm²，马尾松和杉木是主要的经济树种。划分经营小班有利于森林的分类经营，为实现林业从传统的以木材生产为主向发挥森林的多功能、多效益的经营方式转变提供条件，进而实现森林的可持续经营，并为促进森林经营单位的可持续发展提供数据支持。     

密度泛函法研究金丝桃素的结构特性与光活性

采用密度泛函法（Density functional theory method,DFT）在6-31G＊基组水平上对金丝桃素（Hypericin,4,4′,5,5′,7,7′-六羟基-2,2′M甲基-中位-萘骈二蒽酮,化学式为C30H16O8）的分子结构、轨道能量、电荷布居、红外图谱等进行了研究,并对分子中的不同氢键类型以及光活性的本质特性进行了讨论;同时对部分计算结果与实验数据进行了对比分析.结果表明,金丝桃素易于与生物分子发生作用从而破坏病变分子;理论计算的数据与一些已知的实验数据具有较好的吻合性,说明计算结果有效.     

Genetic potential for residual feed intake and diet fed during early- to mid-gestation influences post-natal DNA methylation of imprinted genes in muscle and liver tissues in beef cattle

Discovery of epigenetic modifications associated with feed efficiency or other economically important traits would increase our understanding of the molecular mechanisms underlying these traits. In combination with known genetic markers, this would provide opportunity to improve genomic selection accuracy in cattle breeding programs. It would also allow cattle to be managed to improve favorable gene expression. The objective of this study was to identify variation in DNA methylation between beef cattle of differential pre-natal nutrition and divergent genetic potential for residual feed intake (RFI). Purebred Angus offspring with the genetic potential for either high (HRFI) or low (LRFI) RFI were prenatally exposed to either a restricted maternal diet of 0.5 kg/d average daily gain (ADG) or a moderate maternal diet of 0.7 kg/d ADG from 30 to 150 d of gestation. We performed DNA methylation analysis of differentially methylated regions (DMR) of imprinted genes (Insulin-like growth factor 2 (IGF2) DMR2, IGF2/H19 imprinting control region (ICR) and IGF2 receptor (IGF2R) DMR2) using post-natal samples of longissimus dorsi (LD) muscle taken from male and female calves at birth and weaning, and of LD muscle, semimembranosus (SM) muscle, and liver samples collected from steers at slaughter (17 months of age). Interestingly, for all three DMR investigated in liver, LRFI steers had higher levels of methylation than HRFI steers. In LD muscle, IGF2/H19 ICR methylation differences for heifers at birth were due to pre-natal diet, while for steers at birth they were mostly the result of genetic potential for RFI with LRFI steers again having higher levels of methylation than HRFI steers. While results from repeated measures analysis of DNA methylation in steers grouped by RFI revealed few differences, in steers grouped by diet, we found higher methylation levels of IGF2 DMR2 and IGF2R DMR2 in LD muscle of restricted diet steers at weaning and slaughter than at birth, as well as increased methylation in LD muscle of restricted diet steers compared with moderate diet steers at weaning and/or slaughter. Our results suggest that differential pre-natal nutrition, and divergent genetic potential for RFI, induces tissue- and sex-specific alterations in post-natal IGF2 and IGF2R methylation patterns and that these patterns can vary with age in Angus beef cattle.