How does the landscape context of occurrence data influence models of invasion risk? A comparison of independent datasets in Massachusetts,USA

The spatial distribution of non-native, invasive plants on the landscape is strongly influenced by human action. People introduce non-native species to new landscapes and regions (propagule pressure) as well as increase ecosystem invasibility through disturbance of native ecosystems. However, the relative importance of different landscape drivers of invasion may vary with landscape context (i.e., the types and amounts of surrounding land cover and land use). If so, data collected in one context may not be appropriate for predicting invasion risk across a broader landscape. To test whether independent occurrence datasets suggest similar landscape drivers of invasion, we compared landscape models based on data compiled by the Invasive Plant Atlas of New England (IPANE), which are contributed opportunistically by trained citizen scientists, to models based on Forest Stewardship plans (FSPs), which are located in privately owned and relatively undisturbed forests. We evaluated 16 landscape variables related to propagule pressure and/or disturbance for significant predictors of invasive plant presence based on presence/absence and count regression models. Presence and richness of invasive plants within FSPs was most influenced by proportion of open land and proximity to residential areas, which are both sources of propagules in forest interiors. In contrast, IPANE invasive plant presence and richness for the same area was influenced by distance to roads and streams. These results suggest that landscape drivers of invasion vary considerably depending on landscape context, and the choice of occurrence dataset will strongly influence model results.     

Machine learning highlights the importance of primary and secondary production in determining habitat for marine fish and macroinvertebrates

1. Species distribution models for marine organisms are increasingly used for a range of applications, including spatial planning, conservation, and fisheries management. These models have been constructed using a variety of mathematical forms and drawing on both physical and biological independent variables; however, what might be called first-generation models have mainly followed the form of linear models, or smoothing splines, informed by data collected in the context of fish surveys.
2. The performance of different classes of variables were tested in a series of species occurrence models built with machine learning methods, specifically evaluating the potential contribution of lower trophic level data. Random forest models were fitted based on the classification of the absence/presence for fish and macroinvertebrates surveyed on the US Northeast Continental Shelf.
3. The potential variables included physical, primary production, secondary production, and terrain variables. For accepted model fits, six variable importance measures were computed, which collectively showed that physical and secondary production variables make the greatest contribution across all models. In contrast, terrain variables made the least contribution to these models.
4. Multivariable analyses that account for all performance measures reinforce the role of water depth and temperature in defining species presence and absence; however, chlorophyll concentration and some specific zooplankton taxa, such as Metridia lucens and Paracalanus parvus, also make important contributions with strong seasonal variations.
5. Our results suggest that lower trophic level variables, if available, are valuable in the creation of species distribution models for marine organisms.

     

Insights into an undescribed high-elevation lake (6,170 m a.s.l.) on Volcán Llullaillaco: A physical and microbiological view

1. High elevation lakes are extreme ecosystems and serve as sentinels of various global changes.
2. An expedition to Volcán Llullaillaco in 1996 discovered an unstudied high-elevation lake (6,170 m a.s.l.) that probably was formed as a result of the past eruptive events or climatic processes such as glacial retreat in the lake basin.
3. This article describes an initial physical characterization of the lake and its microbial communities derived from two sampling expeditions in 2013 and 2016.
4. The microbial community in the lake, with an area between 1.2 and 1.4 ha and a depth of 6.8 m, was dominated by Proteobacteria, Actinobacteria and Haloarchaea. In addition, 26 bacterial isolates were identified within the genera Subtercola, Xylophilus, Rhodanobacter, Mesorhizobium and Pseudomonas.
5. Lago Llullaillaco is one of the highest recorded lakes in the world, and this study highlights the unique microbial diversity of this aquatic ecosystem and the importance of its preservation to understand the complex biological processes under polyextreme conditions.

     

Connectivity,habitat, and flow regime influence fish assemblage structure: Implications for environmental water management in a perennial river of the wet–dry tropics of northern Australia

1. Environmental water management seeks to balance competing demands between the water needed to sustain human populations and their economic activities and that required to sustain functioning freshwater ecosystems and the species they support. It must be predicated on an understanding of the environmental, hydrological, and biological factors that determine the distribution and abundance of aquatic species.
2. The Daly River of the wet–dry tropics of northern Australia consists of a perennially flowing main stem and large tributaries, as well as many small to large naturally intermittent tributaries, and associated off‐channel wetlands. Increased groundwater abstraction to support irrigated agriculture during the dry season threatens to reduce dry‐season flows that maintain perenniality and persistence of freshwater fishes.
3. Fish assemblages were surveyed at 55 locations during the dry season over a 2‐year period with the goal of establishing the key landscape‐scale and local‐scale (i.e. habitat) drivers of fish species distribution.
4. Longitudinal (upstream/downstream) and lateral (river/floodplain) gradients in assemblage structure were observed with the latter dependent on the position in the river landscape. Underlying these gradients, stream flow intermittency influenced assemblage composition, species richness, and body size distributions. Natural constraints to dispersal were identified and their influence on assemblage structure was also dependent on position within the catchment.
5. Eight distinct assemblage types were identified, defined by differences in the abundance of species within five groups differing in functional traits describing body size, spawning requirements, and dispersal capacity. These functional groups largely comprised species widely distributed in northern Australia.
6. The results of the study are discussed with reference to the environmental flow needs of the Daly River and other rivers of northern Australia. The findings may also be applied to environmental flow management in savannah rivers elsewhere.

     

Contrasting intraspecific dietary shifts in two terapontid assemblages from Australia’s wet‐dry tropics

Abstract – This study assessed the size‐related patterns of dietary resource use in terapontid assemblages from two north Australian wet‐dry tropical river systems exhibiting contrasting long‐term flow regimes. Substantially higher size‐related dietary divergence in the form of additional trophic guilds and lower levels of dietary overlap were evident among terapontids from the comparatively stable Daly River system, particularly during the dry season. Relatively restricted expression of size‐related dietary shifts in conjunction with higher levels of dietary overlap and no significant seasonal effects on dietary overlap were features of assemblage interaction in the highly variable Burdekin River. Results highlight size‐related dietary shifts as a complex aspect of terapontid trophic habits, and one that can exhibit considerable spatial dynamism.     

Aetiology of clinical mastitis in six Somerset dairy herds.

Clinical mastitis was monitored in six Somerset dairy herds for one year. The herds all had three-month geometric mean bulk milk somatic cell counts of less than 250,000 cells/ml. Escherichia coli was the predominant pathogen isolated on all the farms and in all months of the year. Environmental pathogens accounted for 61.4 per cent of all cases of clinical mastitis and for 79.3 per cent of the mastitis cases in which an aetiological agent was identified. The mean annual incidence was 41.6 cases per 100 cows (range 14 to 75). Affected cows suffered a mean of 1.5 cases and 16.4 per cent of quarters suffered at least one repeat case. Mastitis due to E. coli was more severe than mastitis due to other causes and it tended to be more severe in early lactation and during the housing period. Mastitis was significantly more severe (grades 2 and 3) in the herd with the lowest bulk milk somatic cell count and in the herd which was kept indoors throughout the year than in the other four herds. Mastitis was fatal in 2.2 per cent of cases and resulted in the death of 0.6 per cent of the lactating cows.     

Carbon sequestration and saving potential associated with changes to the management of agricultural soils in England

Abstract. The potential for soil organic carbon sequestration, energy savings and the reduction of the emission of greenhouse gases were investigated for a range of changes in the management of tilled land and managed grassland. These parameters were modelled on a regional basis, according to local soils and crop rotations in England, and avoided the use of soil related indices. The largest carbon sequestration and saving contribution possible comes from an increase in the proportion of permanent woodland, such that a 10% change in land use could amount to 9 Mt C yr⁻¹ in the initial years (arable and grassland). Changes in arable management could make a significant contribution to an abatement strategy if carried out in concert with greater use of permanent conservation field margins, increased returns of crop residues and reduced tillage systems, contributing 1.3 Mt C yr⁻¹ in the initial years. It should be noted, however, that true soil carbon sequestration would be only a minor component of this (125 kt C yr⁻¹), the main part being savings on CO₂ emissions from reduced energy use, and lower N₂O emissions from reduced use of inorganic nitrogen fertilizer.     

Bat activity on riparian zones and upper slopes in Australian timber production forests and the effectiveness of riparian buffers

Unlogged buffers are used to ameliorate impacts to riparian areas in timber production forests. One function of these buffers is to protect the biodiversity of riparian areas. We measured bat activity in buffered streams with ultrasonic detectors across four different stream orders in logged, regrowth and mature forests (60 sites). Bat activity, foraging rates and species richness were similar in buffered streams surrounded by logged, regrowth and mature forests, suggesting that riparian areas effectively provide habitat for foraging and commuting bats in selectively logged forests. Vespadelus pumilus was the only species that responded to logging history, with decreased activity in mature forests. We found higher activity on larger rather than smaller order streams, a pattern also not affected by logging history. Bat activity along paired forest trail flyways on upper slopes (60 sites) was measured simultaneously with riparian flyway activity (for a total of 120 sites) to determine the importance of riparian areas relative to other available flyways. Activity was higher on upper slopes than on small streams, but similar to levels on larger streams. Total foraging activity was similar between riparian zones and upper slopes. Upper slopes contained higher species diversity, with Chalinolobus gouldii, Miniopterus schreibersii, Mormopterus norfolkensis, Scotorepens sp., Vespadelus pumilus and, to a lesser extent, Vespadelus darlingtoni detected more often than along streams. Other species (Rhinolophus megaphyllus, Nyctophilus spp. and Miniopterus australis) were not affected by topography. Estimates of total vegetation cover and, in particular, rainforest cover, were negatively associated with bat activity, highlighting the need for management of forest ‘clutter’ in regrowth forests for a suite of bat species. Streams and forest trails provide areas of lower clutter, which assist in maintaining high species diversity in regrowth forests. Our results support the use of riparian buffers, and point to the need for greater recognition of tracks on upper slopes as important habitat.