Quantifying sponge erosions in Western Australian pearl oyster shells

This paper describes several methods to estimate the amount of sponge erosion in pearl oyster shells (Pinctada maxima Jameson, 1901). Internal erosion can be calculated from non‐destructive surface area estimates because a clear relationship was found between the eroded area on the surface of the shells and internal erosions. Grading shells into three different categories, according to the severity of erosion, also proved to be a suitable method to quickly assess the amount of sponge erosions. All methods were more accurate in shells with larger amounts of erosions. Using the described methods, the Lacepedes fishing ground was more diverse in bioeroding sponge species compared with sites at the 80‐Mile fishing ground locations. Pione velans Hentschel, 1909 was the dominant bioeroding sponge species but Cliona dissimilis Ridley and Dendy, 1886 eroded more shell material than P. velans. Observed patterns suggest that P. velans had a more recent recruitment than C. dissimilis. We suggest that visual grading together with estimates from the shell surface will be sufficient to determine the general long‐term trends in bioeroding sponge severity. However, results of monitoring programmes need to be supplemented by histological examination to confirm sponge activity and species identity.     

Distribution and status of medicinal leeches (genus Hirudo) in the Western Palaearctic: anthropogenic,ecological, or historical effects?

1. Distribution and status of medicinal leeches were re‐considered in the light of the new taxonomy recognizing four Western Palaearctic species: Hirudo medicinalis, Hirudo verbana, Hirudo orientalis and Hirudo troctina. 2. Recent records and new data obtained on expeditions to Ukraine, Russia, Azerbaijan, Kazakhstan, Uzbekistan and the Western Balkans were mapped to obtain an up‐to‐date overview of the distribution. 3. Three hypotheses explaining the current ranges of all Hirudo species were tested. The ecological hypothesis, suggesting a strong impact of large‐scale environmental factors, received the highest support, while anthropogenic influence was minimal, and no historical patterns of refugia and colonization were detected. 4. Mapped localities of all Hirudo species show extensive, belt‐shaped ranges extending from east to west. H. medicinalis is distributed from Britain and southern Norway to the southern Urals and probably as far as the Altai Mountains, occupying the deciduous arboreal zone. H. verbana has been recorded from Switzerland and Italy to Turkey and Uzbekistan, which largely corresponds to the Mediterranean and sub‐boreal steppe zone. H. orientalis is associated with mountainous areas in the sub‐boreal eremial zone and occurs in Transcaucasian countries, Iran and Central Asia. H. troctina has been found in north‐western Africa and Spain in the Mediterranean zone. 5. Based on the data gathered, and considering real and potential threats, global IUCN category Near Threatened is proposed for H. medicinalis, H. verbana, and H. orientalis, while H. troctina can only be assigned to category Data Deficient. Copyright © 2010 John Wiley & Sons, Ltd.     

Molecular evidence for cosmopolitan distribution of platyhelminth parasites of tunas (Thunnus spp.)

Global distribution of platyhelminth parasites and their host specificities are not well known. Our hypothesis was that platyhelminth parasites of large pelagic fishes are common around the world. We analysed molecular variation in three different taxa of platyhelminth parasites infecting four species of tunas: yellowfin tuna (Thunnus albacares, Scombridae) from Western Australia, southern bluefin tuna (Thunnus maccoyii, Scombridae) from South Australia, Pacific bluefin tuna (Thunnus orientalis, Scombridae) from Pacific Mexico and northern bluefin tuna (T. thynnus, Scombridae) from two localities in the Mediterranean (Spain and Croatia). Comparisons of ITS2 and partial 28S rDNA demonstrated two congeneric species of blood flukes (Digenea: Sanguinicolidae) from multiple hosts and localities: Cardicola forsteri from southern bluefin and northern bluefin tunas, and Cardicola sp. from Pacific bluefin and northern bluefin tunas; and a gill fluke, Hexostoma thynni (Polyopisthocotylea: Hexostomatidae), from yellowfin, southern bluefin and northern bluefin tunas. Partial 28S rDNA indicates that a second type of fluke on the gills, Capsala sp. (Monopisthocotylea: Capsalidae), occurs on both southern bluefin and Pacific bluefin tunas. This appears to be the first report of conspecific platyhelminth parasites of teleosts with a wide‐ranging geographical distribution that has been confirmed through molecular approaches. Given the brevity of the free‐living larval stage of both taxa of flukes on the gills (H. thynni and Capsala sp.), we conclude that the only feasible hypothesis for the cosmopolitan distribution of these flatworms is migrations of host tunas. Host migration also seems likely to be responsible for the widespread occurrence of the two species of blood flukes (Cardicola spp.), although it is also possible that these were translocated recently by the spread of infected intermediate hosts.     

Current knowledge and new assumptions on the evolutionary history of the African lungfish,Protopterus, based on a review of its fossil record

Lungfish have a large fossil record that started over 400 Ma ago and a relict modern diversity within Australia, Africa and South America. Their study mostly concentrates on their sister‐group relationship with the tetrapod vertebrates, on their early evolution and on the physiology of their air breathing and of the ability of certain species to aestivate. Conversely, little is known about the evolutionary history of modern taxa. In this study, the focus is on the single polytypic extant genus, Protopterus. Four species and seven subspecies are currently present in African freshwater. As fossils, Protopterus are recognized by their heavy tooth plates. Indeed, the review of the diagnostical characters shows that so far we are not able to confidently distinguish fossil species. The fossil record is thus explored through the analysis of the distribution of the genus. A comprehensive scenario for their evolutionary history is built by including also knowledge of the ecology, distribution and phylogeny of modern Protopterus, in the context of the environmental changes that affected Africa over the last 100 Ma. The genus has been present in Africa for at least 100 Ma when the continent separated from South America. Northern Africa might be the cradle for the African lineage, but other regions of Africa cannot be ruled out. During the Paleogene, lungfish disappeared from northern Africa, whereas modern Protopterus arose in a peri‐equatorial area with dispersal from this area late in the Pliocene. This correlates with great environmental change that occured during the last 25 Ma in eastern Africa.     

Evaluating candidate wetlands for the assisted colonization of the western swamp turtle Pseudemydura umbrina in a changing climate: Macro-invertebrate food resources and turtle diet

1. The natural habitat of the western swamp turtle (Pseudemydura umbrina Siebenrock, 1901) – the ephemeral, winter wet swamps north of Perth, Australia – is in danger owing to climate change and habitat fragmentation. The decline in rainfall in this area over the last five decades is predicted to continue, shortening the annual activity period for the turtles and potentially shifting their optimal climate zone to the south.
2. Assisted colonization to wetlands in the cooler far south west of the state is one management response. As a contribution to such a measure, the diversity and abundance of food resources and consumption by turtles were evaluated at two potential and one existing colonization site.
3. Thirty-five captive-bred juvenile P. umbrina were temporarily released into three sites: Moore River Nature Reserve north of Perth (into which the species had already been successfully translocated) and Meerup and East Augusta in the cooler far south of Western Australia.
4. Food resources were assessed using sweep nets to sample invertebrates on two occasions at each wetland. Separate samples were collected for biomass determination and for assessing invertebrate diversity. Feeding by turtles was assessed by stomach flushing.
5. Neither biomass nor biodiversity differed significantly between the southern sites and the reference site north of Perth. Stomach contents varied greatly, from 0 to 62 animals per turtle. The main prey items were beetles, ostracods, isopods and tadpoles.
6. Each candidate wetland provided adequate food resources, indicating that assisted colonization to the cooler south coast of Western Australia has the potential to become a reasonable conservation tool to ensure the long-term survival of P. umbrina.

     

Genotyping of Tenacibaculum maritimum isolates from farmed Atlantic salmon in Western Canada

Mouthrot infections (bacterial stomatitis) have a significant impact on the Atlantic salmon aquaculture industry in Western Canada due to economic losses and fish welfare. Bacteria isolated from lesions in the field have been identified as Tenacibaculum maritimum. Mouthrot is different to classical tenacibaculosis, which is most commonly associated with ulcerative lesions, frayed fins and tail rot. The marine fish pathogen T. maritimum is found worldwide; however, in Western Canada, the knowledge of the genetic profile of T. maritimum is limited. This study looked at increasing this knowledge by genotyping T. maritimum isolates collected from Atlantic salmon from farms in Western Canada. These genotypes were compared to other species of the genus Tenacibaculum, as well as other known sequence types within the species. The Western Canadian isolates belong to two new sequence types within the T. maritimum species. Phylogenetic analysis shows that the isolates form a distinct branch together with T. maritimum NCIMB 2154^T separate from other Tenacibaculum type strains, and they are most closely related to strains from Norway and Chile.     

Reproductive dynamics and nursery habitat preferences of two commercially important Indo-Pacific red snappers <Emphasis Type="Italic">Lutjanus erythropterus</Emphasis> and <Emphasis Type="Italic">L. malabaricus</Emphasis>

Red snappers were examined for reproductive biology and age-0 habitat preferences. Spawning in red snappers occurred throughout the year in northern Australia and eastern Indonesia; at least 10–30% of females and 40–80% of males were in ripe or spawning condition in most months. Northern Australian populations showed a spawning peak from July to December (L. erythropterus) and September to March (L. malabaricus). Eastern Indonesian L. malabaricus had a less defined pattern with two peaks: January–March and October. Size at first maturity was 240 mm for males and 250–300 mm for females. L ₅₀ estimates were similar between species in northern Australia: 270–280 mm (males) and 350–370 mm (females). Maximum batch fecundity was 676,100 oocytes for L. erythropterus and 997,000 oocytes for L. malabaricus. Higher mean abundances of age-0 L. erythropterus were found in silty and coarse sand/rubble estuarine habitats of northern Australia (456 ± 119 fish/km²) compared with sandy coastal habitats (5 ± 3 fish/km²). Most age-0 snapper caught at Sape (eastern Indonesia) were L. malabaricus (91%) with mean abundances of 312 ± 14 fish/km². The similarities in the reproductive characteristics of red snappers suggest that successful management approaches adopted in northern Australia should be considered in eastern Indonesia.     

Young of the Midas cichlid get biologically active nonnutrients by eating mucus from the surface of their parents

Fry (first mobile offspring) of the Midas cichlid,Cichlasoma citrinellum, feed on the epidermal mucus of their parents. Ingesting mucus increased at first then fluctuated during the four-week period of parental care of swimming young (fry). Total protein in the mucus was assessed using Bio-Rad-Protein-assays. Western blots revealed prolactin (tiPRL 177 and traces of tiPRL 188) and growth hormone (tiGH). Thyroxine (T₄) was also detected quantitatively by RIA. Fry with parents grew faster initially than those raised without. The growth rate of fry isolated from parents increased, however, when fed daily about 0.01 mg ovine PRL or ovine GH. Museum of Vertebrate Zoology The genus Cichlasoma, sensu lato, has been thrown into uncertainty by the restriction of the name to some South American species; until the generic allocations of the many Central American species in this nominal genus are resolved, Stiassny (1991) recommends retaining the generic name for them but enclosing it in a single quote.     

Anaesthesia, sedation and transportation of juvenile Menidia estor (Jordan) using benzocaine and hypothermia

Anaesthesia, sedation and transportation of the Atherinopsid, Menidia estor, were investigated using benzocaine, hypothermia and combinations of the two. The optimum dose rates of benzocaine for sedation of juvenile Chirostoma estor were 15 and 18 mg L⁻¹. When hypothermia was used alone, stable sedation of C. estor was induced at 15 and 12°C, with no mortalities and full recovery after about 8 min. There was synergism when benzocaine and hypothermia were combined, with the optimal combination being at 15°C and 12 mg L⁻¹ benzocaine. Successful transportation was conducted over 3.5 and 8.5 h using combined benzocaine and hypothermia. Aloe vera extract used in the transportation medium reduced scale loss. This work has, for the first time, defined a systematically derived system of safe, long distance, live transportation of this species and others of the genus Menidia.     

Historical DNA as a tool to genetically characterize the Mediterranean sand tiger shark (Carcharias taurus,Lamniformes: Odontaspididae): A species probably disappeared from this basin

1. The sand tiger shark (Carcharias taurus) is a coastal species distributed in temperate and sub‐tropical waters, classified as ‘Vulnerable’ at global level and ‘Critically endangered’ in eastern Australia, south‐western Atlantic Ocean, and Mediterranean Sea. Six populations (north‐western Atlantic, Brazil, South Africa, Japan, eastern Australia, and western Australia) with low genetic diversity and limited gene flow were identified worldwide, but genetic information for many other geographic areas are still missing. Specifically, this species is listed in several reports as part of the Mediterranean fauna, even if there has been a lack of catches and sightings in recent years in this basin. To clarify the origin of C. taurus individuals caught in the past in the Mediterranean Sea, historical samples were genetically analysed.
2. Nine samples with certain Mediterranean origin were collected from different European museums. DNA was extracted and ~600 bp of the mitochondrial DNA control region were amplified using eight overlapping species‐specific primer pairs. Sequences obtained were aligned with all the haplotypes globally known so far.
3. Genetic analysis revealed the misidentification of one museum specimen. Among the remaining Mediterranean historical samples, three different haplotypes were recovered. Two of them previously observed only in South Africa and one described in both South African and Brazilian populations.
4. Results suggest a genetic relationship between Mediterranean sand tiger sharks and those from the western Indian Ocean. According to previous studies, we hypothesized that, during the Pleistocene, the cold Benguela upwelling barrier was temporarily reduced allowing the passage of C. taurus individuals from the Indian to Atlantic Ocean. After the restoration of this phylogeographic barrier some individuals were trapped in the Atlantic Ocean and probably migrated northward colonizing the western African coasts and the Mediterranean Sea.

     

A Comparison of the Effects of Two Prey Enrichment Media on Growth and Survival of Pacific Bluefin Tuna,Thunnus orientalis,Larvae

Three experiments were conducted to investigate the growth, survival, and standardized cohort biomass of Pacific bluefin tuna, Thunnus orientalis, larvae fed nutritionally enhanced prey during the first week of feeding using two commonly used, commercially available enrichment media, AlgaMac Enrich and Marine Glos. T. orientalis larvae exhibited exponential growth in standard length and dry weight. The daily specific growth rates in length and weight are the first reported for T. orientalis larvae and the averages ranged from 3.8 to 4.1% and 27.5%, respectively, for larvae in the AlgaMac treatment and from 4.1 to 6.1% and 31.5%, respectively, in the Marine Glos treatment. Average daily growth rates in length ranged from 0.16 to 0.23 mm/d for larvae in the AlgaMac treatment and from 0.17 to 0.27 mm/d for those in the Marine Glos treatment. Daily growth rates in length were similar to those reported for other tuna larvae reared in the laboratory but slower than most published estimates for larval tunas in situ at similar water temperatures. Mean prey number per gut was positively associated with mean prey level in the tank. Both enrichment media appear to be good sources of nutritional improvement of planktonic prey for T. orientalis larvae.     

An amoeba associated with gill disease in turbot,Scophthalmus maximus (L.)

An amoeba associated with a severe gill disease affecting farmed turbot, characterized by pronounced hyperplasia of the branchial epithelia and accumulation of mucus between the secondary lamellae, is described for the first time. The amoeba was isolated, cloned and cultured on Bactoagar. Light microscopy showed that trophozoites had a mean length of 12 μm (range 8–20 μm), with a nucleus 3–5 μm in diameter containing a large central nucleolus 1–3 μm in diameter. Transmission electron microscopy showed that the mitochondria, Golgi bodies, rough endoplasmic reticulum, microfilaments, cytoplasmic microtubules and glycocalyx were similar to those previously reported for the genus Platyamoeba. These and other findings strongly suggest that the amoeba isolated is of the genus Platyamoeba, while its morphometric characteristics suggest that it may represent a new species. This is the first report of a species of the genus Platyamoeba in association with gill disease in turbot.     

First‐year survival of North East Atlantic mackerel (Scomber scombrus) from 1998 to 2012 appears to be driven by availability of Calanus,a preferred copepod prey

Mackerel (Scomber scombrus) is one of the ecologically and economically most important fish species in the Atlantic. Its recruitment has, for unknown reasons, been exceptional from 1998 to 2012. The majority (75%) of the survivors in the first winter were found north of an oceanographic division at approximately 52°N, despite the fact that mackerel spawns over a wide range of latitudes. Multivariate time series modelling of survivor abundance in the north revealed a significant correlation with the abundance of copepodites (stage I–IV) of Calanus sp. in the spawning season (April to June). The copepodites were a mix of C. helgolandicus (dominating) and C. finmarchicus. The growth of mackerel larvae is known to be positively related to the availability of nauplii and copopodites of preferred prey species, namely, large calanoid copepod species such as Calanus. The statistical relationship between mackerel survivors and abundance of Calanus, therefore, most likely, reflected a causal relationship: high availability of Calanus probably reduced starvation, stage‐specific predation and cannibalism (owing to prey switching). The effects of other abundant, but less preferred zooplankton taxa, (Acartia sp., Branchiopoda spp. and Echinodermata spp. larvae), as well as stock size, temperature and wind‐induced turbulence were not found to be significant. However, stock size was retained in the final model because of a significant interaction with Calanus in oceanic areas west of the North European continental shelf. This was suggested to be a consequence of a density driven expansion of the spawning area that increased the overlap between early life stages of mackerel and food (Calanus) in new areas.     

Dispersal ability determines the genetic effects of habitat fragmentation in three species of aquatic insect

• 1. The dispersal ability of species and the geographic scale of habitat fragmentation both may influence the extent of gene flow between fragments, but their interactions have rarely been tested, particularly among co‐occurring species.
• 2. Population genetic structures of three species of aquatic insect were compared in streams fragmented by reservoirs and in unfragmented streams in north‐eastern Japan, using 52, 37, and 58 RAPD markers. The three species studied included a strong disperser Cincticostella elongatula (Ephemeroptera: Ephemerellidae), an intermediate disperser Stenopsyche marmorata (Trichoptera: Stenopsychidae), and a weak disperser Hydropsyche orientalis (Trichoptera: Hydropsychidae).
• 3. The patterns of genetic isolation by distance (IBD) supported a priori hypotheses of dispersal ability. The strong disperser (C. elongatula) exhibited significant IBD only at the largest spatial scale studied (among drainages, r=0.50, P<0.01). The intermediate disperser (S. marmorata) showed IBD both within (r=0.22, P<0.01) and among (r=0.45, P<0.01) drainages. The weak disperser (H. orientalis) did not exhibit significant IBD at any scale.
• 4. Pairwise genetic differentiation (θ) indicated that neither the weak disperser nor the strong disperser were genetically differentiated above and below reservoirs when compared with reference sites. This was in contrast to previous results for S. marmorata, for which subpopulations were genetically fragmented across larger (>4.1 km), but not smaller (<2.9 km) reservoirs.
• 5. We suggest that intermediate dispersers, i.e. those at equilibrium between migration and genetic drift within drainages, are more likely to be affected by fragmentation than either strong or weak dispersers. Intermediate dispersers could therefore be used as indicator species in studies aimed at detecting the effects of distance between habitat fragments (e.g. reservoir size) for conservation planning. Copyright © 2010 John Wiley & Sons, Ltd.

     

The application of recreational fishing survey data for ecological research,a case study from Western Port,Australia

There is a world‐wide need for information on the ecology and habitat dependencies of important fish species. Recreational fishing surveys represent a potential source of data to increase our knowledge of fish distribution and habitat relationships. Here, a case study is provided on two key recreational species, King George Whiting Sillaginodes punctatus (Cuvier) and Snapper Chrysophrys auratus (Forster). The data came from a recreational fishing survey where 10,978 interviews were conducted from 1998 to 2013 in Western Port, Victoria, Australia. Spatial mapping of catch rate in relation to depth and habitat showed that S. punctatus distribution was related to seagrass cover while C. auratus distribution was related to deeper reef habitat. Juveniles of both species were more abundant in the south‐eastern section of the bay, where water quality is affected by catchment inputs. Overall, the study showed that the inclusion of spatial and habitat information in the design of recreational fishing surveys can significantly increase understanding of the ecology of key species.     

Experiments to assess the suitability of nine species of prawns for intensive cultivation

This paper describes experiments in which nine species of prawns were compared for their suitability for intensive culture in closed systems. The species tested were: Macrobrachium rosenbergii, Penaeus aztecus, P. indicus, P. japonicus, P. monodon, P. occidentalis, P. orientalis, P. schmitti and P. setiferus. Tanks with a bottom area of 0.6 m² and water depth 20 cm were stocked with juvenile prawns (0.2–0.5 g mean live-weight) of each species at two stocking densities, equivalent to 25 and 166 prawns/m². Water conditions were maintained at 28±2°C and 28–30‰ (M. rosenbergii was reared in fresh water), and growth and survival were monitored during 16 weeks.Fastest growth was recorded for P. monodon and P. orientalis, which reached mean live-weights of 25.43 g and 22.80 g respectively at the low stocking density and 12.95 g and 14.63 g at the high stocking density. Best survival was recorded for P. monodon, which was considerably better than any of the other species. It was concluded that P. monodon and P. orientalis merit further consideration as candidates for intensive culture.     

基于RAG2基因序列分析仿石鲈科鱼类及其相关种类系统进化关系

为探讨仿石鲈科鱼类目前存在的分类争议问题,测定了仿石鲈科(Haemulidae),金线鱼科(Nemipteridae),眶棘鲈属(Scolopsis)等相关科属共33种鱼类RAG2基因部分序列,利用最大简约法(MP法)和贝叶斯分析法(BI法),并以黄鹦嘴鱼作为外类群构建分子系统进化树.结果显示,33种鱼类共形成三大类群,其中仿石鲈科8个属聚成一类群,金线鱼属和眶棘鲈属的种类聚成另一类群,眶棘鲈属未能与仿石鲈科形成单系.同时,基于属间遗传距离比较,眶棘鲈属与金线鱼科的遗传距离比其与仿石鲈科各属的遗传距离要小得多,表明眶棘鲈属与金线鱼科有更近的亲缘关系,支持眶棘鲈属隶属于金线鱼科的观点.此外,传统分类资料中归类于仿石鲈科的髭鲷属(Hapalogenys)也没有与仿石鲈科聚成单系,而是独自形成一支,位于进化树基部,显示出髭鲷属与仿石鲈科关系较远,与近年来认为髭鲷属应该从仿石鲈科中划分出去的结果一致.在仿石鲈科内部,少棘胡椒鲷属(Diagramma)中的少棘胡椒鲷与胡椒鲷属(Plectorhinchus)的种类关系很近.在进化树上,少棘胡椒鲷位于胡椒鲷属的内部,花尾胡椒鲷最先分化出来,位于该分支基部,支持少棘胡椒鲷归为胡椒鲷属,名称沿用原来的学名胡椒鲷的观点.     

Two epizootic Perkinsus spp. events in commercial oyster farms at Santa Catarina,Brazil

Perkinsus spp. have been detected in various bivalve species from north‐east Brazil. Santa Catarina is a South Brasil state with the highest national oyster production. Considering the pathogenicity of some Perkinsus spp., a study was carried out to survey perkinsosis in two oyster species cultured in this State, the mangrove oyster Crassostrea gasar and the Pacific oyster Crassostrea gigas. Sampling involved eight sites along the state coast, and oyster sampling was collected during the period between January 2013 and December 2014. For the detection of Perkinsus, Ray's fluid thioglycollate medium (RFTM) and histology were used, and for the identification of the species, PCR and DNA sequencing were used. Perkinsus spp. was found by RFTM in C. gigas and C. gasar from São Francisco do Sul. This pathology was also detected in C. gasar from Balneário Barra do Sul both, by RFTM and histology. Perkinsus marinus was identified in C. gigas and C. gasar from São Francisco do Sul and Perkinsus beihaiensis in C. gasar from Balneário Barra do Sul. This is the first report of P. marinus in C. gigas from South America. Results of this preliminary study suggest that both oyster species tolerate the species of Perkinsus identified, without suffering heavy lesions.     

Assessing the status of a disjunct population of the endangered crayfish Euastacus bispinosus in a karst rising‐spring habitat in southern Australia

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