Rhithronic and potamonic fishes coexist in wadeable streams under distinct metacommunity processes

Recent metacommunity ecology research has demonstrated that local communities can be divided into different guilds. We hypothesised that wadeable streams are occupied by fishes that follow distinct metacommunity processes. The mainstem is a river corridor for the potamonic fish guild (PFG) but represents a nonhabitat matrix for the rhithronic fish guild (RFG). Accordingly, the PFG should be filtered out from the headwaters by dispersal limitations or environmental filtering along the longitudinal gradient, and the guild should have a nested pattern of beta diversity. The RFG should be structured by the local species sorting, and the species turnover component should prevail. We sampled fishes in 42 streams distributed in four subbasins that were separated by at least one mainstem channel. We modelled the influences of spatial and environmental predictors using a partial redundancy analysis and variance partitioning and by quantifying the components of beta diversity that were associated with species turnover and nestedness. Both environment and space affected the structure of the RFG, owing to the influence of substrate type, riparian cover and presence of downstream barriers. The PFG was structured by only the influence of downstream barriers. Species turnover predominated within the RFG, and species nestedness dominated within the PFG. Our results support the hypothesis that potamonic and rhithronic guilds coexist in wadeable streams and follow distinct metacommunity assembly mechanisms. Potamonic guilds are structured by regional dispersal from the mainstem channels, whereas rhithronic guilds are sorted by local filtering along the longitudinal gradient in a spatially structured environment.     

Relative influences of environmental and spatial factors on stream fish assemblages in Brazilian Atlantic rainforest

Understanding the role of local and spatial factors in the structuring of aquatic communities is a goal in ecology. The hierarchical structure of stream systems provides opportunities to test the hypothesis that fish assemblages that are more isolated in headwaters are structured by local and/or regional variables. Fishes and abiotic data were collected in 18 stream reaches from two hydrographic basins in the Brazilian Atlantic rainforest. The variance of species composition was partitioned into fractions explained by environmental and spatial factors. The pure environmental fraction explained ≈17% of variance and was represented by regional, habitat availability/heterogeneity and perturbation gradient. The pure spatial fraction explained ≈15% of the individual fraction. Environmental data revealed a species sorting process, and the spatial effect might be a result of different dispersal routes that fish performed during the formation of the hydrographic basins, actual land use and water resources management. The importance of maintaining connectivity in these systems was emphasised because it cannot be guaranteed that the dispersion ability of species is still occurring under current land use change.     

Effects of life‐history traits on stream fish abundances across spatial scales

Identifying cross‐scale patterns of ecological processes is imperative, especially in hierarchically structured riverine ecosystems. The role of abiotic factors in determining cross‐scale spatial structure of stream fish populations and communities is well studied, but less is known about how species traits drive cross‐scale patterns. We investigated the role of species traits for explaining autocorrelation of stream fish abundance at spatial scales ranging from local stream reaches to major basins. We calculated intraclass correlation coefficients (ICCs) representing abundance autocorrelation within species (N = 47) at each of five spatial scales. A hierarchical Bayesian regression then modelled ICCs against spatial scale with the resulting regression coefficients modelled as functions of species traits. Finally, we ordinated the scale‐by‐species ICC matrix to calculate an overall metric describing species whose abundances were autocorrelated along a gradient of large to small scales, and modelled this metric as a function of species traits. Abundances of most species were autocorrelated at smaller spatial scales. Maximum fecundity had a significant positive relationship with abundance patterns across spatial scales. Species habitat affinities and body forms were significantly associated with overall abundance patterns across spatial scales: populations of upland/lotic‐affiliated species adapted to streams with high flow correlated at small (≤10 km²) spatial scales. Lowland/lacustrine species with laterally compressed bodies showed little correlation across scales. The appropriate spatial scale for modelling abundance is determined not only by exogenous (e.g. environmental) factors, but also endogenous factors, like traits. Careful consideration of traits and life history will aid researchers in designing more effective and efficient surveys and analyses.     

Hydrological connectivity in coastal inland systems: lessons from a Neotropical fish metacommunity

de Macedo-Soares PHM, Petry AC, Farjalla VF, Caramaschi EP. Hydrological connectivity in coastal inland systems: lessons from a Neotropical fish metacommunity.
Ecology of Freshwater Fish 2010: 19: 7–18. © 2009 John Wiley & Sons A/S
Abstract –  We assessed the influence of hydrological connectivity in structuring fish communities through seasonal samplings of environmental variables and fishes in a coastal lagoon and associated pools in the Restinga de Jurubatiba National Park, Brazil. Community structure attributes such as species richness, numerical density and biomass, Shannon–Wiener diversity index and evenness were compared between periods of the lowest and highest hydrological connectivity, while the environmental gradient and fish zonation were explored through ordination techniques. The greater hydrological connectivity established in the rainy season promoted the homogenisation of most environmental variables and fish species, which differed markedly from the arrangement observed in the dry season. Despite variation in fish species composition, community attributes showed non-significant differences between the dry and rainy seasons. The patterns of composition and numerical density in pools were strongly influenced by local factors, especially salinity, dissolved oxygen, total phosphorous concentration and water colour in the dry season, in addition to total nitrogen concentration and depth in the rainy season. Comparable to the role played by flood pulses in river-floodplain systems, the hydrological connectivity in these tropical coastal waterbodies seems to strongly influence fish community structure, and, therefore to determine regional biodiversity.     

Inferring spatial structure from population genetics and spatial synchrony in demography of Baltic Sea fishes: implications for management

The spatial structure of species is important for their dynamics and evolution, but also for management and conservation. There are numerous ways of inferring spatial structures, and information from multiple methods is becoming more common to examine how different processes shape the spatial structures of species to improve fish management. Here, we investigate the spatial structure of a suite of Baltic Sea fish species based on the following: (i) spatial (presumably neutral) genetic differentiation, reviewed from the literature, and (ii) spatial synchrony in abundance changes from time series of fishery‐independent surveys, which we currently find to be underused given the amount of data available. For each of these two methods, species were classified as having a distinct, continuous or no/weak spatial structure. In addition, based on each source of information, we estimated the spatial scale of management units for species. The results show that only among species confined to the coastal zone the two sources of information yielded a congruence of the spatial structure (displaying a continuous spatial structure). In contrast, offshore species show weak spatial genetic structure but stronger spatial structure of synchrony in abundance. Based on this, we suggest that population genetic structure and synchrony in abundance should be used as complementary information as they reflect different spatial processes and suggest that management actions should differ with respect to scale depending on the management targets applied. We propose similar analysis should be applied to areas outside the Baltic Sea, and other stock identification methods, to improve management of fish resources.     

基于河流网络体尺度的皖河河源溪流鱼类群落的空间格局

2013年7-8月对大别山皖河河源1～3级溪流的鱼类进行了调查,着重从河流网络体空间尺度研究了鱼类多样性及群落结构的空间格局,探讨了局域栖息地条件和支流空间位置对鱼类群落的影响.1～3级溪流间,鱼类物种数随溪流级别增大显著增多,但个体数无显著变化(P＞0.05);长河、潜水和皖水3条支流间鱼类物种数和个体数均无显著差异(P＞0.05).鱼类物种数受局域栖息地条件(海拔)和支流空间位置(河流级别和下游量级)的联合影响,但鱼类个体数仅受局域栖息地条件(海拔)的影响.不同溪流级别和不同支流间的群落结构均无显著差异(P＞0.05).同物种数类似,鱼类群落结构也受局域过程(海拔)和空间过程(汇合量级和下游量级)的联合影响.本研究表明,总体上皖河河源溪流网络体中的鱼类群落是局域过程和空间过程联合作用的产物.因此,为合理保护和管理皖河河源的溪流鱼类物种,有必要兼顾局域栖息地条件与河流网络连通性的保护和恢复.     

海州湾及邻近海域春夏季典型断面鱼类浮游生物群落的结构特征

根据2015年5―7月在海州湾及邻近海域存在空间异质性的南北两个典型断面进行的鱼卵、仔稚鱼水平拖网调查数据,采用多元统计分析等方法研究了该海域春、夏季鱼类浮游生物群落的空间变化。结果表明,本次调查共获得鱼卵33587粒,仔稚鱼713尾。出现鱼卵25种(未定种1种),隶属于14科25属,仔稚鱼13种(未定种1种),隶属于13科13属。鱼卵优势种主要是鳀(Engraulis japonicus)、多鳞鱚(Sillago sihama)、(魚銜)属(Callionymus spp.)、皮氏叫姑鱼(Johnius belengerii)、江口小公鱼(Stolephorus commersonni)和短吻红舌鳎(Cynoglossus joyneri);仔稚鱼优势种主要是(魚銜)属和斑鰶(Konosirus punctatus)。鱼类浮游生物种类组成年代际变化明显,目前以生命周期短、个体小、资源更新节律快的小型鱼种为主;研究表明,鱼类浮游生物的优势种在不同月份和断面之间存在一定变化,5、6月南北两断面优势种组成不同,7月开始出现共同优势种。从鱼类浮游生物的空间分布来看,近岸海域的丰度较高,5、6月鱼类浮游生物的平均丰度均为北面断面1高于南面断面2,7月反之。鱼类浮游生物群落在两个典型断面随月份呈现出不同特征,水深、温度和盐等海洋环境因子综合影响着春、夏季海州湾及邻近海域鱼类浮游生物群落结构。     

Influences of local habitat and stream spatial position on fish assemblages in a dammed watershed,the Qingyi Stream,China

Abstract – Identifying the underlying mechanisms that explain the spatial variation in stream fish assemblages is crucial for the protection of species diversity. The influences of local habitat and stream spatial position on fish assemblages were examined from first‐order through third‐order streams within a dammed watershed, the Qingyi Stream, China. Based on linear regression models, the most important environmental variables influencing fish species richness were water temperature and wetted width, but stream spatial position variables were less important. Using canonical correspondence analysis, five environmental variables were identified to significantly influence fish assemblages, including three habitats (elevation, substrate and water depth) and two spatial variables (C‐link and Link). Our results suggest that, in a heavily dammed watershed, by blocking the migration routes of fishes, dams weaken the influence of stream spatial position on fish species richness. However, fish species compositions are significantly influenced by both local habitat environment and stream spatial position, which is perhaps owing to the distribution of fish species according to ecological requirements not related to spatial processes.     

Modelling stream fish species distribution in a river network: the relative effects of temperature versus physical factors

Abstract – The relative influence of temperature versus local physical factors on the spatial distribution of riverine fish species was investigated in a large watershed of south-western France. Using generalised additive models and hierarchical partitioning, we modelled the ecological responses of 28 fish species to a set of five environmental predictors, and we quantified the independent effect of each predictor. The spatial distribution of fish species was primarily determined by both mean temperature and position along the upstream–downstream gradient. However, responses to these environmental factors varied according to the species considered. Fish species with strong thermal requirements (e.g., common carp, black bullhead, Atlantic salmon) were mainly sensitive to temperature whereas longitudinal gradient was of primary importance for downstream species (e.g., common bream, largemouth bass, pike perch). Both the statistical methods used gave concordant results and appeared complementary. This dual-approach, quantifying the relative contribution of each environmental factor, appears particularly useful to understand the spatial distribution of stream fish species. Separating the effects of temperature versus habitat factors is crucial to accurately predict species distribution modifications in the current context of global change.     

长江中游鱼类群落结构及多样性

为了解长江中游鱼类群落结构、多样性及其与环境因子的关系,2021年6月和11月在长江中游5个江段(宜昌、石首、嘉鱼、武汉、湖口)开展了鱼类和环境调查。定量分析了鱼类群落结构特征、时空分布格局及其与环境因子的关系。研究期间共采集到鱼类16 335尾,隶属6目13科50属76种,其中鲤形目鱼类最多(52种),占总种数的70%。在3种生活习性类型中,定居性鱼类物种数最多(80%);在3种摄食类型中,肉食性鱼类物种数最多(46%);在3种产卵类型中,产黏性卵鱼类的物种数最多(50%)。相对重要性指数(IRI)显示,瓦氏黄颡鱼、银鲴、三角鲂、铜鱼等中小型鱼类为优势种。平均Margalef丰富度指数为5.11、平均Pielou均匀度指数为0.63、平均Shannon-Wiener多样性指数为3.23、平均Simpson优势度指数为0.26。丰度/生物量比较曲线表明,宜昌和湖口江段鱼类群落受人类活动干扰严重,石首、嘉鱼和武汉江段鱼类群落相对稳定。Cluster和NMDS分析结果表明,长江中游的鱼类群落可划分为3个类群,宜昌为一类群;石首、嘉鱼和武汉为一类群;湖口为一类群。RDA分析结果显示,NH     

Fish assemblages of an African river floodplain: a test of alternative models of community structure

In the Oueme River, a lowland river in Benin, Africa, artificial ponds constructed in the floodplain (whedos) are colonised during the high‐water period by a presumably random sample of fishes from the river channel. As water slowly recedes from the floodplain, fishes are isolated in whedos until they are harvested near the end of the dry season. We surveyed fishes in whedos and adjacent main‐channel and floodplain habitats during two low‐water periods (2008 and 2009) and one falling‐water period (2010–2011) to evaluate the relevance of four alternative metacommunity models to these systems. In 2010–2011, we also measured a suite of physicochemical variables including dissolved oxygen, temperature, specific conductivity and per cent cover of aquatic vegetation. Whedos were covered with dense growth of aquatic vegetation, and dissolved oxygen concentrations were lower in whedos and a natural floodplain depression compared with the main channel. Multivariate analyses revealed that habitat types were distinct with regard to assemblage structure and abiotic conditions. Assemblages in whedos and natural floodplain depressions were differentiated from those of the river channel, with the floodplain habitats being dominated by piscivorous fishes that tolerate aquatic hypoxia. Dispersal, aquatic hypoxia and predation act in concert to shape local community structure. Patch dynamics, species sorting and mass effect models all were consistent with patterns in fish assemblage structure in this system. We conclude that the underlying mechanisms of drift, speciation, selection and dispersal ultimately may be more useful for explaining patterns in ecological communities than alternative metacommunity models.     

Spatial distribution pattern and physical – biological interactions in the larval notothenioid fish assemblages from the Bransfield Strait and adjacent waters

The Bransfield Strait and adjacent waters represent one of the most important areas of larval retention off the Antarctic Peninsula. The species composition of larval fish assemblages has been described in detail in previous surveys carried out in the area, but the role of environmental parameters influencing the spatial distribution of early life stages was poorly known. By applying generalized additive models and multivariate analyses, we evaluated the role of environmental variables in shaping the small‐scale distribution of larval fish and investigated the spatial structure of the larval assemblage. It consisted of a few dominant notothenioid species, such as Champsocephalus gunnari, Lepidonotothen squamifrons, Lepidonotothen larseni, Pleuragramma antarctica and Trematomus scotti, and several other rarely caught species. Sea water temperature, salinity and sampling depth were the most important factors determining the spatial distribution of fish with different relative contributions, together explaining more than 80% of total deviance observed. Species richness was mostly affected by salinity, probably due to the narrow range of salinity preference by the species. Cluster analysis of abundance and presence data identified six and five distinct groups, respectively, each of them with substantial contributions of single or rarely two species. Differences in reproductive strategies of adult populations and spatial distribution of early life stages driven by different larval behaviour in response to environmental factors contribute to maintaining a well‐structured larval fish assemblage, ensuring spatial and food niche partitioning.     

Seasonal and spatial variation in a prairie stream-fish assemblage

Abstract – Stream-fish assemblage and environmental data for 13 sites in the upper Brazos River, Texas, USA during 1997 and 1998 were used to assess the relationship between environmental conditions, and seasonal and spatial variation in fish species abundance and distribution patterns. There was considerable spatial variation in environmental conditions among sites. Spatial variation in species diversity and species composition was related to variation in conductance (salinity), depth and current velocity among sites and streams. Species diversity increased downstream and species composition shifted from primarily cyprinodontids upstream to cyprinids downstream. Among all dominant species, spatial components of variation in fish abundance were greater than seasonal components, suggesting that assemblage structure is determined more by average or persistent differences in environmental conditions among sites than by seasonal variation in environmental conditions.     

Fish assemblages in Atlantic Forest streams: the relative influence of local and catchment environments on taxonomic and functional species

Streams are under environmental pressures acting at different scales that influence the ecological organisation of their fish assemblages. However, the relative influence of the different scale‐related variables on assemblage composition and function is poorly understood. We evaluated the importance of local‐ and catchment‐scale environmental variables, as well as the spatial structure of the sampling sites, in shaping fish assemblages in Atlantic Forest streams. Local‐scale variables were those measured at the sampling sites, describing the local habitat conditions (e.g. depth, substrate type, altitude). Catchment‐scale variables were those integrating the upstream landscape of the sampling sites (e.g. catchment land use). Spatial distances were calculated from watercourse distance using principal coordinates of neighbour matrices. Altogether, 28 local and seven catchment variables were initially subjected to two processes of eliminating co‐linearity. Redundancy analysis was applied to the three matrices (spatial, local and catchment) to quantify the variance in the structure of the fish assemblages explained by each matrix. Local variables explained more variability in both taxonomic and functional assemblage structure, than catchment and spatial variables. Local variables also changed along the longitudinal gradient, which consequently influenced fish assemblage structure. This pattern was also influenced by anthropogenic alteration and non‐native species, which were more abundant in downstream sites. These results highlight the need to assess Atlantic Forest streams under different environmental scales, especially through the use of quantitative local‐scale metrics, and to consider the effects of longitudinal patterns in structuring fish assemblages when developing and implementing monitoring programmes, impact studies and conservation plans.     

太子河河流等级对鱼类群落结构及环境因子的影响

在河流生态学研究中河流等级是一种用于评价河流生物多样性及环境特征的重要分类标准。有研究表明不同河流等级中鱼类群落结构具有明显的差异性,但鱼类群落结构是否与河流等级及其影响的环境因子有明显的内在关联性还有待深入研究。本文以太子河流域为研究区域探究河流等级与鱼类群落分布之间的关系以及鱼类群落分布特征与环境因子之间的响应关系,并将太子河主要支流作为独立流域单元进行相同等级河流之间鱼类群落分布差异的比较。对太子河流域125个点位鱼类群落和水环境理化特征的调查结果显示,太子河流域鱼类群落结构在不同河流等级之间有显著差异,而且鱼类多样性与丰富度在三级河流最高,指示种分析表明洛氏鱥与北方条鳅是上游河段的指示种,短须颌须鮈与东北雅罗鱼是中游河段的指示种,?、大鳞副泥鳅及鰕虎鱼类是下游河段的指示种;摄食功能群在各级河流也有显著差异,杂食性鱼类的比例及物种数在三级河流和五级河流较高,昆虫食性的鱼类在一级河流和二级河流比例较高,昆虫食性鱼类的物种数在五级河流较高。 各等级河流之间总氮和氨氮有显著差异;相同等级河流之间鱼类群落结构也有显著的差异性,其电导率、水温和氨氮等环境因子具有显著差异性。本研究结果表明,太子河流域不同河流等级鱼类群落结构有显著的差异,相同等级河流的鱼类分布特征也有显著差异,但这种鱼类群落结构的空间差异性不受水环境理化因子的影响。     

Spatiotemporal patterns of fish community composition in Great Lakes drowned river mouths

Freshwater river mouths in large lakes are centres of biological activity, yet little is understood about the spatial and temporal dynamics of fish communities in these systems. In the Laurentian Great Lakes, we sampled littoral fishes over 3 years in six drowned (i.e., protected) river mouths to: (i) quantify spatial (among river mouths) and temporal (among years) variation, (ii) evaluate associations with environmental conditions and (iii) assess spatial patterns of community similarity. We sampled 6787 fish representing 43 species over the course of the study. Multivariate analyses indicated that variation in fish species composition was more strongly partitioned among river mouths than among years. Fish communities across the six river mouths were partitioned into three groups, a pattern we attribute to variability in anthropogenic disturbance and environmental conditions. Canonical correspondence analysis showed that fish species composition was associated with specific conductivity, vegetation cover, turbidity and pH, suggesting species–environment relationships are similar to those shown for Great Lakes coastal wetlands. Finally, we found a negative relationship between geographic distance and community similarity, suggesting that dispersal and/or environmental gradients play a role in shaping these river mouth fish assemblages. We conclude that Great Lakes drowned river mouths can harbour diverse and spatially variable fish assemblages that are driven by a combination of local and regional factors.     

Spatio‐temporal patterns of fish assemblage structure in a coastal plain stream: appropriate scales reveal historic tales

Quantifying assemblage structure across spatio‐temporal scales is ecologically important and further aids in the understanding of community organisation processes. Currently, few studies have assessed assemblage structure across generous magnitudes of scale, and influences of processes (biotic and abiotic) responsible for structuring assemblages are still questioned. Using community and hydrologic data collected over a 22‐year period from a stretch of river nearing 150 km, we examined spatio‐temporal fish assemblage structural patterns in a temperate coastal plain stream. Results indicated that significant changes in assemblage structure across time were influenced by environmental disturbances, including drought and hurricane events. Assemblages were restructured in a punctuated manner directly following these events, and complete recovery of initial assemblage structure did not occur across the study period. Additionally, we found spatial differentiations between upstream and downstream assemblages, which were driven by greater abundances of several species in downstream sites. Our results suggest that assemblage structure is influenced by environmental variation, specifically, extreme disturbance events and spatial habitat heterogeneity.     

山东琵琶岛海域人工鱼礁区鱼类群落物种及功能多样性

为了解山东琵琶岛海域人工鱼礁区鱼类群落物种及功能多样性的时空变化特征,于2020年7月—2021年4月在富瀚国家级海洋牧场示范区开展4个季度的渔业资源和环境因子调查,采用物种多样性指数和基于12个功能性状的功能多样性指数分析了鱼类群落多样性的时空变化及其与环境因子的关系。结果表明,鱼礁区鱼类物种和功能多样性指数均呈现显著的季节变化,而对照区仅功能多样性指数呈现显著的季节变化;Pielou均匀度指数、Simpson多样性指数、功能均匀度指数和功能离散度指数在空间上存在显著差异;Spearman相关性分析结果显示,功能丰富度与物种数和Margalef丰富度具有显著相关关系,功能均匀度与物种数和Pielou均匀度具有显著相关关系;群落特征加权平均数指数(CWM)表明,鱼类群落优势性状组成呈现一定的时空变化特征;冗余分析结果显示,透明度和无机氮对物种多样性指数具有显著影响,而酸碱度、无机氮、溶解氧和透明度则对功能多样性指数影响显著。以上结果说明,鱼类群落物种和功能多样性具有明显的时空变化特征,但变化趋势不一致,表明物种和功能多样性指数在解释鱼类群落差异时存在一定的互补性。     

Fish reproductive activity reveals temporal variations predominating spatial heterogeneity in maintaining high functional diversity of a Neotropical reservoir

The reproductive activity of the fish assemblage in a large Neotropical reservoir was evaluated by surveying the occurrence of ichthyoplankton in response to spatial and temporal variation in environmental factors. Fish reproduction was investigated by capturing larvae along representative spatial gradients in the main body (longitudinal) and arms (lateral) of the reservoir. After identification, the captured larvae were classified into different groups according to the functional traits of their parental stock. Sampling occurred monthly at night from October to March over five reproductive periods between 2009 and 2016, using conical-cylindrical plankton nets with flowmeter. Water samples were taken simultaneously allowing the measurement of environmental factors related to reproductive activity. The relationship between the environmental factors and the functional traits was assessed using RLQ and fourth-corner analyses. An evaluation of 51,995 larvae revealed there was greater larval abundance in the lacustrine and transition zones of both longitudinal and lateral gradients. Occurrences often correlated with temporal instead of spatial gradients. Higher rainfall correlated with abundances of detritivorous and migratory species. Higher water levels correlated with higher abundances of non-native species, species without parental care, with external fecundation, and partial spawning. Dry periods, with lower water and higher dissolved oxygen, correlated with higher abundances of insectivores and sedentary species. Although the presence of a dam-free stretch of river upstream of the reservoir had a positive influence on fish larvae in the fluvial zone, the results did not show differentiation along either gradient. Thus, the composition of the functional groups of fish species that reproduce in the Itaipu Reservoir appears to be predominantly influenced by the temporal variation in environmental factors rather than the formation of spatial gradients.     

Fish species incidence patterns in naturally fragmented Chihuahuan Desert streams

We investigated how stream fragmentation affects local fish species persistence and extinction from three Rio Grande systems (Texas, USA) stream reaches with different levels of natural fragmentation. We examined species–volume (SV) relationships of fish assemblages in 42 pools across the watersheds and predicted greater fragmentation would correspond to an increase in the slope of the SV relationship due to decreased within‐reach rescue effects. In addition, we examined relationships among tributary‐specific nested subset patterns, local habitat features and spatial position of the reaches relative to the Rio Grande mainstem to better understand the importance of local and regional processes on fish species richness patterns in the stream reaches. Slopes of the SV curves did not differ among the stream reaches, but the intercepts of the SV curves were significantly different. These results indicated rescue effects among habitats within a stream reach were not apparent; however, rescue effects from the mainstem largely determined the species richness of a given stream reach. The nested subset patterns in all stream reaches were related to several local environmental factors, and large, deep pools provided important aquatic refugia in all three systems. We suggest declines in mainstem and tributary flows will likely continue to impact local and regional fish assemblage attributes. High flow events are important for dispersal and can reset tributary fish communities for the next extinction‐driven, successional cycle.