Prioritizing aquatic conservation areas using spatial patterns and partitioning of fish community diversity in a near‐natural temperate basin

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Quantifying ichthyofaunal zonation and species richness along a 2800‐km reach of the Rio Chama and Rio Grande (USA)

Abstract – Ichthyofaunal zonation occurs when lotic fishes are partitioned into distinct assemblages, usually in response to longitudinally distributed habitats. Several studies have documented zonation within the Rio Grande, but this is the first to quantitatively test the zonation hypothesis along a continuous 2800‐km river profile, extending from the Rio Chama headwaters to the Gulf of Mexico. Using a large, multi‐source dataset, I detected three ichthyofaunal zones: a high gradient (～1.5%) ‘upper’ zone, a moderate gradient (～0.2%) ‘middle’ zone and a low gradient (<0.1%) ‘lower’ zone. Species richness was lowest in the upper zone and highest in the lower zone, and all zones contained large numbers of nonnative species. However, species richness did not accumulate in a consistent, downstream manner. Instead, it tracked local‐scale changes in mean annual discharge. This demonstrates the strong effect of river regulation and irrigation withdraws on fish diversity in the Rio Grande.     

Beaver dams shift desert fish assemblages toward dominance by non‐native species (Verde River,Arizona, USA)

The reintroduction of beaver (Castor canadensis) into arid and semi‐arid rivers is receiving increasing management and conservation attention in recent years, yet very little is known about native versus non‐native fish occupancy in beaver pond habitats. Streams of the American Southwest support a highly endemic, highly endangered native fish fauna and abundant non‐native fishes, and here we investigated the hypothesis that beaver ponds in this region may lead to fish assemblages dominated by non‐native species that favour slower‐water habitat. We sampled fish assemblages within beaver ponds and within unimpounded lotic stream reaches in the mainstem and in tributaries of the free‐flowing upper Verde River, Arizona, USA. Non‐native fishes consistently outnumbered native species, and this dominance was greater in pond than in lotic assemblages. Few native species were recorded within ponds. Multivariate analysis indicated that fish assemblages in beaver ponds were distinct from those in lotic reaches, in both mainstem and tributary locations. Individual species driving this distinction included abundant non‐native green sunfish (Lepomis cyanellus) and western mosquitofish (Gambusia affinis) in pond sites, and native desert sucker (Catostomus clarkii) in lotic sites. Overall, this study provides the first evidence that, relative to unimpounded lotic habitat, beaver ponds in arid and semi‐arid rivers support abundant non‐native fishes; these ponds could thus serve as important non‐native source areas and negatively impact co‐occurring native fish populations.     

基于河流网络体尺度的皖河河源溪流鱼类群落的空间格局

2013年7-8月对大别山皖河河源1～3级溪流的鱼类进行了调查,着重从河流网络体空间尺度研究了鱼类多样性及群落结构的空间格局,探讨了局域栖息地条件和支流空间位置对鱼类群落的影响.1～3级溪流间,鱼类物种数随溪流级别增大显著增多,但个体数无显著变化(P＞0.05);长河、潜水和皖水3条支流间鱼类物种数和个体数均无显著差异(P＞0.05).鱼类物种数受局域栖息地条件(海拔)和支流空间位置(河流级别和下游量级)的联合影响,但鱼类个体数仅受局域栖息地条件(海拔)的影响.不同溪流级别和不同支流间的群落结构均无显著差异(P＞0.05).同物种数类似,鱼类群落结构也受局域过程(海拔)和空间过程(汇合量级和下游量级)的联合影响.本研究表明,总体上皖河河源溪流网络体中的鱼类群落是局域过程和空间过程联合作用的产物.因此,为合理保护和管理皖河河源的溪流鱼类物种,有必要兼顾局域栖息地条件与河流网络连通性的保护和恢复.     

Patterns of fish movement at a desert river confluence

Quantifying fish movements in river networks helps identify critical habitat needs and how they change with environmental conditions. Some of the challenges in tracking fish movements can be overcome with the use of passive integrated transponder (PIT) tagging and antennas. We used PIT technology to test predictions of movement behaviour for four fish species at a mainstem–tributary confluence zone in an arid‐land river system. Specifically, we focused on the McElmo Creek tributary confluence with the San Juan River in south‐western Utah, USA. We quantified variation in species occurrences at this confluence zone from May 2012 to December 2015 relative to temporal and environmental conditions. We considered occurrences among species relative to tagging origins (tributary versus mainstem), season and time of day. Generally, fishes tagged in the focal tributary were more likely to be detected compared to fish tagged in the mainstem river or other tributaries. Additionally, adults were most likely to be detected across multiple years compared to subadults. Based on a Random Forests model, the best performing environmental variables for predicting seasonal detections included mainstem discharge during run‐off season (razorback sucker Xyrauchen texanus), tributary discharge during monsoon season (Colorado pikeminnow Ptychocheilus lucius) and mainstem water temperature (flannelmouth sucker Catostomus latipinnis and channel catfish Ictalurus punctatus). The variable responses by endemic and introduced fishes indicate tributary habitats provide several key functions within a fish community including spawning, rearing, foraging and refuge.     

Niche processes and conservation implications of fish community assembly in a rice irrigation system

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Long‐term changes in unionid assemblages in the Rio Grande,one of the World's top 10 rivers at risk

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Effects of small dam condition and drainage on stream fish community structure

Low‐head dams are ubiquitous in eastern North America, and small dam removal projects seek to improve habitat conditions for resident and migratory fishes. Effects of small dams of varying status on local fish communities are poorly documented, and recent work suggests benefits of maintaining fragmentation. We sampled fish at 25 dams (9 breached, 7 relict, 9 intact) in three river basins in North Carolina, USA. Fishes were sampled at three reaches/dam from 2010 to 2011. Study reaches were located upstream (free‐flowing reaches), downstream (tailrace) and >500 m downstream of dams (n = 75 reaches). Analyses revealed significantly elevated fish CPUE, taxa richness and percentage intolerant taxa in intact dam tailraces suggesting small dams may improve conditions for resident taxa. Breached dam tailrace reaches exhibited lower fish CPUE, taxa richness and percentage intolerant taxa relative to upstream reference reaches. Relict dams exhibited no between‐reach differences in fish community metrics. Nonmetric multidimensional scaling revealed drainage‐specific stream fish responses across study drainages. Tar and Roanoke drainage streams with intact and relict dams supported fish assemblages indicative of natural communities, whereas Neuse Drainage streams with intact and breached dams contained disturbed habitats and communities. These data demonstrate fish community responses to dam condition are drainage specific but communities in streams with intact and relict dams are largely similar. Additionally, breached dams may warrant higher removal priorities than intact dams because they negatively influence fish communities. The variability in response to some dams indicates managers, regardless of region or country, should consider holistic approaches to dam removals on a case‐by‐case basis.     

Variation in fish assemblages across dry-season pools in a Mediterranean stream: effects of pool morphology, physicochemical factors and spatial context

Pires DF, Pires AM, Collares-Pereira MJ, Magalhães MF. Variation in fish assemblages across dry-season pools in a Mediterranean stream: effects of pool morphology, physicochemical factors and spatial context. Ecology of Freshwater Fish 2010: 19: 74–86. © 2009 John Wiley & Sons A/S
Abstract –  Knowledge of patterns of refuge use by fish is critical for maintaining biodiversity in drought-prone streams. In this study, the fish assemblages of 21 dry-season pools in a Mediterranean stream were characterised and related to three sets of factors reflecting pool morphology, physicochemistry and spatial context. Fish were associated with the three sets of variables, with variation partitioning indicating that overall species richness and abundance were primarily related to pool morphology but relative species abundances were mainly associated with physicochemical contexts. In general, species richness was the highest but overall fish abundance was the lowest in large pools. Pools well shaded by riparian canopy held the highest richness and abundance of native fish, but relative species abundances and assembly structure varied among pools contingent on canopy cover, substrate composition and spatial location. These results suggested that conservation of fish diversity in Mediterranean streams requires networks of pools with diverse sizes and physicochemical contexts.     

Metapopulation analysis indicates native and non‐native fishes respond differently to effects of wildfire on desert streams

Ash flows and flooding associated with wildfires represent important but understudied sources of disturbance for fish populations. Knowledge concerning these disturbances is especially limited for larger streams where warm water species dominate. Fire‐related disturbances have been hypothesised to differentially affect native and non‐native fishes, although this hypothesis has only been tested for salmonids. The objective of our research was to contrast effects of uncharacteristically large wildfires followed by flooding on metapopulations of native and non‐native fishes in the Gila River of southwest New Mexico. Probabilities of occupancy, colonisation and local extinction of fishes were calculated across sites before and during disturbance and were also measured across a broader spatial scale during disturbance to identify potential refuge locations. Occupancy was higher for native fishes than non‐natives, but multiple wildfire and flood events increased extinction probabilities of native species. Responses of non‐native species to wildfires were mixed; extinction of non‐native salmonids increased during disturbance, while extinction of several warm water species remained unchanged or decreased. Several undisturbed sites were poor refugia for natives as they were impacted by non‐native piscivores, dewatering, and fragmentation. However, despite exposure to multiple disturbances, sites located in large tributary and valley reaches were consistently occupied by native species, suggesting these habitats provided refugia. We suggest that management actions (forest thinning; prescribed burning) that restore a more natural disturbance regime of small and less severe fires coupled with habitat remediation activities (non‐native removal; decreased water withdrawal; improved connectivity) might diminish extinction risk for native fishes exposed to wildfire disturbance.     

Seasonal changes in spatial patterns of Oncorhynchus mykiss growth require year‐round monitoring

Growth and movement of juvenile salmonids influence the expression of individual life history traits and production of adults at the population scale. We individually marked and recaptured juvenile Oncorhynchus mykiss over the course of a year in Murderers Creek, a semi‐arid tributary to the South Fork John Day River in Northeast Oregon. We tagged O. mykiss in three reaches with differing stream gradient, stream temperature and fish density. Mean growth rates differed significantly among reaches and seasons with a significant interaction between reach and season. Reaches with high growth rates shifted across Murderers Creek among seasons. Stream reaches with high growth during the winter had low growth during summer and vice‐versa. The proportion of individuals moving at the reach scale during summer was low (≤2.6%), suggesting that individuals did not track resources at the reach scale. The spatio‐temporal variation in growth indicates that monitoring stream salmonids across multiple seasons is necessary to accurately characterise the production of different stream reaches.     

Spatial scale effects on habitat associations of the Ashy Darter,Etheostoma cinereum,an imperiled fish in the southeast United States

Abstract – The ashy darter, Etheostoma cinereum, is an imperiled fish within the Cumberland and Tennessee drainages of the southeast United States. An understanding of habitat associations and the relationship of habitat use across multiple spatial scales are critical elements in its conservation. Our objectives were to quantify habitat associations at the stream reach and microhabitat scales for adult and juvenile darters, and to understand the linkage between the two scales based on gradients of habitat use. We focused our efforts within the Rockcastle River, Kentucky (Cumberland River drainage), because the watershed was known to contain a relatively large ashy darter population. Three hundred twenty‐two individuals were collected from 21 reaches. The species was restricted to the mainstem of the river and the lower reaches of the larger tributaries. The distribution and abundance of adult and juvenile darters differed significantly at each spatial scale, and both groups demonstrated non‐random use of the available habitat. Gradients of stream size and substrate size were identified as important factors. A threshold of environmental quality was determined based on the habitat use patterns among the two scales. Habitat use between the two scales was independent within the threshold, indicating that the specific quality of the microhabitats did not necessarily matter within a stream reach. However, beyond the threshold, a decrease of at least 48% in adult and juvenile darter abundance was seen, indicating that a sufficient network of suitable microhabitats is needed to support a good population of darters within a stream reach.     

Longitudinal distribution of uncommon fishes in a species‐rich basin

1. The spatial organization of fishes in a river system was investigated to evaluate the longitudinal distribution of uncommon species. It was anticipated that overall richness of the fish community would increase in a downstream direction together with habitat extent, but that more uncommon species would occur upstream owing to greater heterogeneity among sites.
2. Fish were collected between 1995 and 2014 at 85 sites distributed throughout the Duck River Basin, Tennessee, USA. A site usually consisted of four habitat types: riffles, runs, pools and shoreline. Each habitat type was sampled with a multipass electrofishing protocol.
3. In all, 136 native fish species were collected. Of these, 71% were classified as uncommon but represented only 16% of the total count of fish collected. As expected, overall species richness increased downstream, but contrary to expectation, uncommon species did too. Some uncommon species were restricted exclusively to tributaries and headwaters, some to tributaries and mainstem, many to mainstem only, but the largest fraction of uncommon species occurred throughout the basin, but even this last group increased in richness downstream.
4. Conservation often focuses on uncommon species. This study suggests that a greater number of uncommon species can be conserved with an emphasis on large downstream reaches, which not only include more aquatic habitat to support larger concentrations of fish, but also shelter the uncommon species that tend to require the most protection.

     

Multiple watershed alterations influence fish community structure in Great Plains prairie streams

Stream fish distributions are commonly linked to environmental disturbances affecting terrestrial landscapes. In Great Plains prairie streams, the independent and interactive effects of watershed impoundments and land cover changes remain poorly understood despite their prevalence and assumed contribution to declining stream fish diversity. We used structural equation models and fish community samples from third‐order streams in the Kansas River and Arkansas River basins of Kansas, USA to test the simultaneous effects of geographic location, terrestrial landscape alteration, watershed impoundments and local habitat on species richness for stream‐associated and impoundment‐associated habitat guilds. Watershed impoundment density increased from west to east in both basins, while per cent altered terrestrial landscape (urbanisation + row‐crop agriculture) averaged ~50% in the west, declined throughout the Flint Hills ecoregion and increased (Kansas River basin ~80%) or decreased (Arkansas River basin ~30%) to the east. Geographic location had the strongest effect on richness for both guilds across basins, supporting known zoogeography patterns. In addition to location, impoundment species richness was positively correlated with local habitat in both basins; whereas stream‐species richness was negatively correlated with landscape alterations (Kansas River basin) or landscape alterations and watershed impoundments (Arkansas River basin). These findings suggest that convergences in the relative proportions of impoundment and stream species (i.e., community structure) in the eastern extent of both basins are related to positive effects of increased habitat opportunities for impoundment species and negative effects caused by landscape alterations (Kansas River basin) or landscape alterations plus watershed impoundments (Arkansas River basin) for stream species.     

Movement dynamics of smallmouth bass (Micropterus dolomieu) in a large river‐tributary system

Smallmouth bass, Micropterus dolomieu Lacepède, movement dynamics were investigated in a connected mainstem river‐tributary system. Smallmouth bass moved large distances annually (n = 84 fish, average = 24.6 ± 25.9 km, range = 0.03 to 118 km) and had three peak movement periods (pre‐spawn, post‐spawn and overwintering). Movement into and out of tributaries was common, but the movement between mainstem river and tributary habitats varied among tagging locations and season. In general, a large proportion of fish that were tagged in tributaries moved out of the tributaries after spawning (22/30 fish). Because of the importance of fish movement patterns on population dynamics, the observed individual variability in movement, quantified using a hierarchical model, and the potential for long‐distance movements are important considerations for smallmouth bass conservation and management. In addition, mainstem river‐tributary connectivity appears to play an important role for smallmouth bass during key life history events.     

Influences of local habitat and stream spatial position on fish assemblages in a dammed watershed,the Qingyi Stream,China

Abstract – Identifying the underlying mechanisms that explain the spatial variation in stream fish assemblages is crucial for the protection of species diversity. The influences of local habitat and stream spatial position on fish assemblages were examined from first‐order through third‐order streams within a dammed watershed, the Qingyi Stream, China. Based on linear regression models, the most important environmental variables influencing fish species richness were water temperature and wetted width, but stream spatial position variables were less important. Using canonical correspondence analysis, five environmental variables were identified to significantly influence fish assemblages, including three habitats (elevation, substrate and water depth) and two spatial variables (C‐link and Link). Our results suggest that, in a heavily dammed watershed, by blocking the migration routes of fishes, dams weaken the influence of stream spatial position on fish species richness. However, fish species compositions are significantly influenced by both local habitat environment and stream spatial position, which is perhaps owing to the distribution of fish species according to ecological requirements not related to spatial processes.     

Mixed stream channel morphologies: implications for fish community diversity

• 1. Stream classification systems are widely used in stream management and restoration. Whereas the principal morphological types of these classification systems are increasingly recognized for their ecological connections, the roles of intermediate and mixed morphologies are still poorly understood, yet may be biologically significant.
• 2. Twenty‐five stream reaches in north‐western Vermont were classified by channel morphology to determine whether fish community diversity differed among pool‐riffle, mixed (i.e. pool‐riffle/cascade, pool‐riffle/other) and forced pool‐riffle stream morphological groups. Stream reach surveys included cross‐sectional surveys, longitudinal profiles, bed substrate characterization, and fish surveys.
• 3. Three fish community diversity measures were calculated: (1) species richness (S); (2) Shannon–Weaver Index (H′); and (3) Simpson's Index (1/D). Multivariate analysis of covariance (MANCOVA) followed by analysis of variance (ANOVA) were used to explore potential differences in fish diversity among stream morphological groups. Fish diversity was significantly different for all three community diversity measures (P?0.05), with pool‐riffle/cascade morphology consistently exhibiting the greatest fish diversity and forced pool‐riffle the lowest.
• 4. These results suggest that fish community diversity is significantly associated with distinct channel morphologies. Generally, pool‐riffle/cascade and pool‐riffle/other stream morphological groups supported habitats that fostered greater species diversity than more homogeneous and uniform pool‐riffle reaches. The observed patterns of diversity are likely to be the result of habitat patches created by variations in flow and other physical characteristics in reaches of mixed morphologies.
• 5. These results support fish sampling schemes that incorporate morphological heterogeneity, such as proportional‐distance designation. Sampling strategies that focus on homogeneous reaches may underestimate diversity, and misrepresent stream condition when fish community data are used in indices of biological integrity (IBIs). Reaches of mixed stream morphologies should be recognized as areas of biological importance in stream and catchment management and in conservation efforts.

Copyright © 2008 John Wiley & Sons, Ltd.     

长江芜湖江段鱼类多样性及其群落结构的时空格局

为制定合理的渔业资源保护措施与管理对策,2009年按季度共4次调查了长江芜湖江段鱼类多样性及其群落结构。结果显示:该江段现有鱼类54种,其中以似鳊(Parabramis pekinensis)、油(Hemiculter bleekeri bleek-eri warpacho)、短颌鲚(Coilia brachygnathus Kreyenberg et Pappenheim)、鲫(Carassius auratus)等中小型鱼类为常见种和优势种,表明了该江段的鱼类组成存在明显的小型化特点。长江干流沿岸浅水区的鱼类多样性最高,江心深水区最低,而青弋江支流、漳河支流和漳河河口的居中,青弋江的鱼类种数和个体数都显著低于沿岸浅水区,但漳河的鱼类数量与沿岸浅水区无明显差异。江心深水区的鱼类群落与其它样点明显不同,而青弋江的鱼类群落与沿岸浅水区、漳河及其河口的鱼类群落也存在部分差异。鱼类群落结构的季节动态无显著性。     

Integration of ecology,demography and genetics to reveal population structure and persistence: a mini review and case study of stream‐dwelling Dolly Varden

Abstract – Spatial structures can drive population dynamics and persistence. The roles of space and dispersal on dynamics, however, remain largely unknown in wild populations, mainly because of the difficulty in extensive/intensive field surveys at multiple locations. Here, I integrate results of ecological, demographic and genetic studies to elucidate detailed population structure and to identify the mechanisms of population persistence in a stream fish. Spatial structures, such as habitat size and connectivity, are particularly important in river and freshwater networks because such ecosystems are highly vulnerable to human activities. These issues are explored by examining results from a decadal research on the stream‐dwelling Dolly Varden charr in the Sorachi River basin, Japan. More than 100 local habitats (i.e. tributaries) were examined for spatial structure of populations by, such as, species presence, population census, redd counts, analysis of population synchrony and microsatellite DNA analysis. The results indicate that (i) population demography is largely independent in each tributary, (ii) some large tributaries support self‐sustaining populations, (iii) despite small population sizes in most tributaries (<30 spawning females), local extinction is rare, except in human‐influenced areas and (iv) probabilities of extinction are likely reduced by immigration of fish from neighbouring tributaries. The evidence suggests that Dolly Varden in this river system function as a source‐sink or mainland‐island metapopulation structure and that processes influencing these structures vary within the stream network. Overall, local populations may be highly persistent as long as local populations are well connected. I also discuss the vulnerability of stream fishes to habitat alterations.     

Water diversion reduces abundance and survival of two Mediterranean cyprinids

Water flow is a fundamental characteristic required for the ecological integrity of stream ecosystems. However, populations of many freshwater fishes in the Mediterranean region are threatened by man‐induced drought due to water diversion. Mark‐recapture methodology is an effective tool for estimating fish abundance and survival probability, but it has been seldom used with Mediterranean freshwater fish. We tagged over 2,400 individuals of two threatened cyprinids (Mediterranean barbel Barbus meridionalis and Catalan chub Squalius laietanus) inhabiting an Iberian stream affected by water diversion, and used mark‐recapture methods to evaluate the effects of flow, temperature and depth on their apparent survival and abundance at hydrologically altered and perennial reaches. Based on estimates over the summer drying season, survival of Mediterranean barbel was more than six times higher in an upstream reach with permanent flow than a middle reach impacted by water diversion. Water depth was the most important habitat feature accounting for differences in survival, with both barbel and chub exhibiting higher survival and abundance at permanent sites farther downstream where flow had been restored and in an unaltered tributary. Our results show clear negative impacts of water diversion on fish populations. Both species, but particularly barbel, have life‐cycle characteristics that may allow populations to recover quickly if natural streamflow was restored by conserving water and reducing water diversion.