Ecological drivers of fish metacommunities: Environmental and spatial factors surpass predation in structuring metacommunities of intermittent rivers

Metacommunity theory is a new approach for explaining how local and regional processes contribute to community organisation and integrative studies are needed to fully characterise the processes underlying its structure and function. We analysed, through variation partitioning and distance decay relationships, how metacommunities of fish in pools of intermittent rivers are structured by environmental, species interaction and spatial factors. The results indicate that both species sorting and dispersal limitation (spatial factors) were important in shaping fish metacommunities. Species sorting was the most influential driver within fish metacommunities, but predation was much less relevant and did not show any pure effect in metacommunity structure. However, environmental factors were determinant among metacommunity patches.     

Fish assemblages of an African river floodplain: a test of alternative models of community structure

In the Oueme River, a lowland river in Benin, Africa, artificial ponds constructed in the floodplain (whedos) are colonised during the high‐water period by a presumably random sample of fishes from the river channel. As water slowly recedes from the floodplain, fishes are isolated in whedos until they are harvested near the end of the dry season. We surveyed fishes in whedos and adjacent main‐channel and floodplain habitats during two low‐water periods (2008 and 2009) and one falling‐water period (2010–2011) to evaluate the relevance of four alternative metacommunity models to these systems. In 2010–2011, we also measured a suite of physicochemical variables including dissolved oxygen, temperature, specific conductivity and per cent cover of aquatic vegetation. Whedos were covered with dense growth of aquatic vegetation, and dissolved oxygen concentrations were lower in whedos and a natural floodplain depression compared with the main channel. Multivariate analyses revealed that habitat types were distinct with regard to assemblage structure and abiotic conditions. Assemblages in whedos and natural floodplain depressions were differentiated from those of the river channel, with the floodplain habitats being dominated by piscivorous fishes that tolerate aquatic hypoxia. Dispersal, aquatic hypoxia and predation act in concert to shape local community structure. Patch dynamics, species sorting and mass effect models all were consistent with patterns in fish assemblage structure in this system. We conclude that the underlying mechanisms of drift, speciation, selection and dispersal ultimately may be more useful for explaining patterns in ecological communities than alternative metacommunity models.     

Taxonomic and functional diversity in a subtropical stream: A longitudinal pattern analysis

Identifying the spatial patterns of fish diversity in streams is basic for the conservation and management of stream fishes. The “upstream–downstream” patterns in the taxonomic α-diversity of stream fishes have been widely surveyed. However, the longitudinal patterns in the functional diversity and β-diversity of stream fishes have been given less attention. In this study, we surveyed fishes along an upstream–downstream gradient in a headwater stream of the Qiantang River, China, and examined the longitudinal variations in fish diversity. Our aims were to assess whether the longitudinal patterns in fish diversity were consistent between the taxonomic and functional metrics and between the α- and β-aspects of diversity. We found that both species richness and functional richness of fishes showed a hump-shaped relationship with the distance from headwaters, while both taxonomic and functional β-diversities presented the U-shaped distributions along the river continuum. Functional diversity related more to the distance from headwaters than taxonomic diversity. Despite their similar relationship with the distance from headwaters, taxonomic and functional β-diversities were dominated by species turnover and function nestedness components, respectively. Our results suggest that, along the river continuum in a subtropical stream, the α- and β-aspects of fish diversity present different longitudinal variations. Although the taxonomic and functional diversity shows similar relationships with distance from headwaters, their spatial variations are driven by different ecological processes.     

Restricted movement of prairie fishes in fragmented riverscapes risks ecosystem structure being ratcheted downstream

1. Prairie streams are dynamic systems in which habitat patches are sporadically created and lost during extreme hydrological events. The persistence of fish species depends on life‐history traits that facilitate their widespread dispersal to recolonize habitats after stochastic extirpation. Artificial barriers are thought to reduce recolonization opportunities and to ultimately displace populations downstream, but the ecological consequences of lost diversity above the barriers are largely unknown.
2. The susceptibility of four prairie fishes to fragmentation and the consequent risk to stream ecosystem processes are described. The selected species exhibit wide tolerances to environmental stressors, represent unique functional feeding guilds, and have different habitat affinities.
3. The ability of each species to access (jumping ability) and successfully traverse (swimming endurance) simulated instream barriers was quantified in the laboratory. Experimental stream complexes were used to isolate the effects of these species on ecosystem structure and function. These replicated single‐species experiments were compared with ‘no fish’ controls to identify the ecological role of each.
4. Small vertical barriers blocked most passage, and with open access all species were unable to traverse relatively short distances against modest water velocities. Stream fragmentation will alter headwater fish assemblage structure and promote the most mobile species. Each species had slightly different effects on the stream ecosystem structure resulting from their different habitat preferences and diets.
5. Without colonization opportunities from neighbouring populations, disturbance events will alter headwater fish assemblages and may degrade the ecosystem structure above barriers.
6. Fragmented riverscapes interact with harsh disturbance regimes to form an ecological ratchet. Systematic species loss above barriers outweighs the opportunity for improvement, suggesting that ecosystem structure may be moving downstream.

     

Trait–environment relationships in Amazon stream fish assemblages

Studies of trait–environment relationships provide important tools for the prediction of the response of biological communities to environmental alterations. The Amazon basin presents enormous potential for the development of research on this type of relationship, given the diversity of both its fish fauna and the aquatic ecosystems this fauna inhabits. The present study investigated the association between local environmental variables and the functional traits of fish in 54 streams of six major Amazonian basins. We identified the relationship between the characteristics of the streams (channel morphology, channel habitat units, riparian vegetation cover, large woody fragments and instream cover for aquatic organisms) and fish traits related to locomotion, habitat use and feeding behaviour. The fish fauna of the broader, deeper and more slowly flowing streams was dominated by nektobenthic species that exploit autochthonous resources such as fish and invertebrates. In narrow, fast‐flowing streams, by contrast, there was a predominance of benthic fishes with varying feeding habits, including periphytivorous and invertivorous species. Narrow, shady streams were inhabited by nektonic species adapted for the exploitation of resources from the marginal vegetation. The results of this study contribute to the understanding of the association between the functional structure of fish assemblages and local environmental variables in Amazonian streams. We hope that these findings will stimulate further research into the natural variation in stream fish assemblages that will ensure the development of more effective management strategies that better protect these important aquatic ecosystems.     

Effects of anthropogenic disturbances on α and β diversity of fish assemblages and their longitudinal patterns in subtropical streams,China

Identifying the spatial patterns of α and β diversity of biotics is an important yet little‐understood area of basic and applied ecological research. Although the upstream–downstream patterns of α diversity of stream fishes are numerously reported, β diversity has received less attention. In this study, we surveyed fishes along the upstream–downstream gradients in three headwater streams of the Qingyi River, China, which were affected by different extents of human activities. We aimed to assess how anthropogenic disturbances affect α and β diversity of stream fishes and their upstream–downstream patterns. We found that, compared with that in the Shuxi Stream disturbed less, endemic species decreased and cosmopolitan species increased in the Maxi and Puxi Stream disturbed heavily. The streams disturbed heavily showed lower α diversity and higher β diversity than that in the stream disturbed less. This among‐stream variations in fish diversity only occurred at the mid‐downstream, not upstream segments. α diversity increased downstream and β diversity decreased downstream from headwaters to mouth in the stream disturbed less, whereas this upstream–downstream pattern in fish diversity shifted in the streams disturbed heavily, in which both α and β diversity showed the quadratic distributions with the hump‐shape for α diversity and the U‐shape for β diversity respectively. Our results suggest that anthropogenic disturbances cause some cosmopolitan fishes replacing many endemic fishes in upland streams. This replacement processes result in α diversity decreasing and β diversity increasing, and shift the spatial patterns in fish diversity along the upstream–downstream gradient.     

Food habits of small fishes in seagrass habitats in Trang,southern Thailand

To clarify the feeding habits of seagrass fishes, we examined the gut contents from 42 fish species collected in seagrass habitats in Trang. Thirteen species showed ontogenetic and/or seasonal changes in food-use patterns. Smaller individuals generally preyed on small planktonic items (e.g., copepod larvae) or small benthic/epiphytic crustaceans (e.g., harpacticoid copepods), with subsequent changes to other prey items (e.g., shrimps, crabs, detritus and filamentous algae) with growth. The most important dietary items for the seagrass fish assemblages comprised benthic/epiphytic crustaceans, detritus, and planktonic copepods. Cluster analysis based on dietary overlaps showed that the seagrass fishes comprised eight feeding guilds (large benthic/epiphytic crustacean, detritus, planktonic animal, small benthic/epiphytic crustacean, mollusc, invertebrate egg, polychaete, and fish feeders). Of these, the first three guilds were the most abundantly represented, whereas the last three were each represented by only a single species.     

The relationship of environmental factors to spatial and temporal variation of fish assemblages in a floodplain river in Texas, USA

Abstract –  Spatial and temporal variation of species–environment relationships were evaluated for shallow-margin and deep-water fish assemblages in the Brazos River, a large floodplain river in Texas, USA. Total variation among the deep-water assemblages (11 species, 86% turnover across gill net samples) was greater than for shallow-margins (38 species, 64% turnover across seine samples). For both shallow-margin and deep-water assemblages, variation was greater among sites than between winter and summer seasons. Shallow-margin assemblage structure was related to depth, velocity and substrate, whereas for deep-water assemblages river discharge, temperature and velocity were important. Season itself accounted for little of the variation among either shallow (6.7%) or deep-water (2.3%) assemblages. Overall temporal patterns of shallow-margin samples appeared to show responses to juvenile recruitment, spates and migration of coastal fishes, whereas for deep-water samples, patterns related to use of reproductive habitats, juvenile recruitment and seasonal activity levels. Brazos River assemblages were less variable overall in comparison with studies along similar length of reach in headwater streams and wadeable rivers. The residual variation in species distribution (54% for shallow-margin and 67% for deepwater) that was not explained by instream variables and season suggests a greater influence of biotic interactions in rivers, particularly those across the spatially dynamic interface of main channel habitats and shallow river margins.     

The guild approach to categorizing estuarine fish assemblages: a global review

Many studies have recently described and interpreted the community structure and function of fishes inhabiting estuaries and other transitional waters in terms of categories or guilds. The latter describe the main features of the fishes’ biology and the way in which they use an estuary. However, the approach has been developed by different workers in different geographical areas and with differing emphasis such that there is now a need to review the guilds proposed and used worldwide. The previous wide use of the guild approach has involved increasing overlap and/or confusion between different studies, which therefore increases the need for standardization while at the same time providing the opportunity to reconsider the types and their use worldwide. Against a conceptual model of the importance of the main features of fish use in estuaries and other transitional waters, this review further develops the guild approach to community classification of fish communities inhabiting those areas. The approach increases the understanding of the use of estuaries by fishes, their interactions and connectivity with adjacent areas (the open sea, coastal zone and freshwater catchments) and the estuarine resources required by fishes. This paper gives a global perspective on this categorization by presenting new or refined definitions for the categories, lists the synonyms from the literature and illustrates the concepts using examples from geographical areas covering north and central America, north and southern Europe, central and southern Africa, Australia and the Indo‐Pacific.     

The ways in which fish use estuaries: a refinement and expansion of the guild approach

This study refines, clarifies and, where necessary, expands details of the guild approach developed by Elliott et al. (2007, Fish and Fisheries 8 : 241–268) for the ways in which fish use estuaries. The estuarine usage functional group is now considered to comprise four categories, that is, marine, estuarine, diadromous and freshwater, with each containing multiple guilds. Emphasis has been placed on ensuring that the terminology and definitions of the guilds follow a consistent pattern, on highlighting the characteristics that identify the different guilds belonging to the estuarine category and in clarifying issues related to amphidromy. As the widely employed term ‘estuarine dependent’ has frequently been imprecisely used, the proposal that the species found in estuaries can be regarded as either obligate or facultative users of these systems is supported and considered in the guild context. Thus, for example, species in the five guilds comprising the diadromous category and those in the guilds containing species or populations confined to estuaries are obligate users, whereas those in the marine and freshwater estuarine‐opportunistic guilds are facultative users.     

Isotopic trophic guild structure of a diverse subtropical South American fish community

Characterization of food web structure may provide key insights into ecological function, community or population dynamics and evolutionary forces in aquatic ecosystems. We measured stable isotope ratios of 23 fish species from the Rio Cuareim, a fifth‐order tributary of the Rio Uruguay basin, a major drainage of subtropical South America. Our goals were to (i) describe the food web structure, (ii) compare trophic segregation at trophic guild and taxonomic scales and (iii) estimate the relative importance of basal resources supporting fish biomass. Although community‐level isotopic overlap was high, trophic guilds and taxonomic groups can be clearly differentiated using stable isotope ratios. Omnivore and herbivore guilds display a broader δ¹³C range than insectivore or piscivore guilds. The food chain consists of approximately three trophic levels, and most fishes are supported by algal carbon. Understanding food web structure may be important for future conservation programs in subtropical river systems by identifying top predators, taxa that may occupy unique trophic roles and taxa that directly engage basal resources.     

Prioritizing aquatic conservation areas using spatial patterns and partitioning of fish community diversity in a near‐natural temperate basin

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Assessing the health of European rivers using functional ecological guilds of fish communities: standardising species classification and approaches to metric selection

Abstract  The functional ecological guild approach is the cornerstone for the development of Indices of Biotic Integrity and multi-metric indices to assess the ecological status of aquatic systems. These indices combine metrics (unit-specific measures of a functional component of the fish community known to respond to degradation) into a single measure of ecological assessment. The guild approach provides an operational unit linking individual species characteristics with the community as a whole. Species are grouped into guilds based on some degree of overlap in their ecological niches, regardless of taxonomic relationships. Despite European fish species having been classified into ecological guilds, classification has not been standardised Europe-wide or within the context of classifying species into guilds from which metrics can be developed for ecological assessment purposes. This paper examines the approach used by the EU project FAME to classify European fish species into consistent ecological guilds and to identify suitable metrics as basic tools for the development of a standardised ecological assessment method for European rivers to meet the requirements of the Water Framework Directive.     

Fish species composition and host fish density in streams of the thick‐shelled river mussel (Unio crassus) – implications for conservation

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Patterns and predictors of fish dispersal in rivers

Quantifying fish dispersal and identifying its general predictors is key for understanding temporal patterns in population dynamics, emigration and immigration, meta‐community dynamics, many ecological processes and predicting recovery time or population responses to environmental changes. This is the first comprehensive quantitative meta‐analysis of heterogeneous freshwater fish movement, aiming to determine mobile and stationary shares of fish communities, their dispersal distances and key predictors of dispersal patterns. By reviewing and analysing 160 empirical data sets from 71 studies covering 62 fishes in streams, it goes beyond previous studies of salmonids’ heterogeneous movement. Based on fitted leptokurtic dispersal kernels, the movement distances of (i) a stationary component (σ_stat) and (ii) a mobile component (σ_mob) as well as the (iii) share of each component (p) were calculated. The median movement distance of the stationary and mobile component of a fish population was 36.4 and 361.7 m, respectively. The share of the stationary individuals was high (median = 66.6%), but unrelated to movement distance. Single and multiple linear regressions as well as mixed‐effects models revealed movement distances positively related to fish length, aspect ratio of the caudal fin, stream size and duration of the study. Furthermore, movement distance differed between taxonomic families. The quantitative parameters of heterogeneous fish movement provided are prerequisite to estimate time lags in fish response to river rehabilitation, temporal patterns in species dispersal, and minimum effective size of potential founder populations for species conservation and stock recovery based on minimum numbers of specimen to disperse.     

Role of large‐ and fine‐scale variables in predicting catch rates of larval Pacific lamprey in the Willamette Basin,Oregon

Pacific lamprey Entosphenus tridentatus is an anadromous fish native to the Pacific Northwest of the USA. That has declined substantially over the last 40 years. Effective conservation of this species will require an understanding of the habitat requirements for each life history stage. Because its life cycle contains extended freshwater rearing (3–8 years), the larval stage may be a critical factor limiting abundance of Pacific lamprey. The objective of our study was to estimate the influence of barriers and habitat characteristics on the catch‐per‐unit‐effort (CPUE) of larval Pacific lamprey in the Willamette River Basin, Oregon, USA. We sampled lampreys at multiple locations in wadeable streams throughout the basin in 2011–13 and used an information theoretic approach to examine the relative influence of fine‐ and large‐scale predictors of CPUE. Pacific lamprey was observed across the basin, but its relative abundance appeared to be limited by the presence of natural and artificial barriers in some sub‐basins. Lower velocity habitats such as off‐channel areas and pools contained higher densities of larval lamprey; mean Pacific lamprey CPUE in off‐channel habitats was 4 and 32 times greater than in pools and riffles respectively. Restoration and conservation strategies that improve fish passage, enhance natural hydrologic and depositional processes and increase habitat heterogeneity will likely benefit larval Pacific lamprey.     

Longitudinal distribution of uncommon fishes in a species‐rich basin

1. The spatial organization of fishes in a river system was investigated to evaluate the longitudinal distribution of uncommon species. It was anticipated that overall richness of the fish community would increase in a downstream direction together with habitat extent, but that more uncommon species would occur upstream owing to greater heterogeneity among sites.
2. Fish were collected between 1995 and 2014 at 85 sites distributed throughout the Duck River Basin, Tennessee, USA. A site usually consisted of four habitat types: riffles, runs, pools and shoreline. Each habitat type was sampled with a multipass electrofishing protocol.
3. In all, 136 native fish species were collected. Of these, 71% were classified as uncommon but represented only 16% of the total count of fish collected. As expected, overall species richness increased downstream, but contrary to expectation, uncommon species did too. Some uncommon species were restricted exclusively to tributaries and headwaters, some to tributaries and mainstem, many to mainstem only, but the largest fraction of uncommon species occurred throughout the basin, but even this last group increased in richness downstream.
4. Conservation often focuses on uncommon species. This study suggests that a greater number of uncommon species can be conserved with an emphasis on large downstream reaches, which not only include more aquatic habitat to support larger concentrations of fish, but also shelter the uncommon species that tend to require the most protection.

     

Food habits of fishes on unvegetated tidal mudflats in Tokyo Bay, central Japan

ABSTRACT:   To clarify the feeding habits of tidal mudflat fishes, the gut contents of 29 fish species, collected from unvegetated tidal mudflats in Tokyo Bay, central Honshu, Japan, were examined. Ontogenetic changes in food preference were recognized in 21 species, including several of commercial importance (e.g. Acanthogobius flavimanus , Konosirus punctatus , Mugil cephalus cephalus , Plecoglossus altivelis altivelis , and Sardinella zunasi ). In general, larvae and/or juveniles of these species fed mainly on small zooplankton or benthic harpacticoid copepods, later switching to other prey items with growth (e.g. gammaridean amphipods, mysids, polychaetes, detritus, bivalves, and juvenile fishes). A cluster analysis based on dietary overlaps showed that the tidal mudflat fish assemblage comprised six feeding guilds (small benthic and epiphytic crustacean, zooplankton, detritus, mollusc, polychaete, and fish feeders). Of these, small benthic and epiphytic crustacean feeders were the most abundantly represented in the number of species.     

Colonizing Islands of water on dry land—on the passive dispersal of fish eggs by birds

The vast majority of global freshwater ecosystems are small lakes with less than 100 m² surface area. These lakes are often unconnected to other water bodies but frequently host fish populations. Existing explanations for how fish colonize such remote habitats often involve birds as vectors transporting fish eggs as propagules. In this study, we aim to quantify the prevalence of these explanations among relevant societal groups as well as their scientific knowledge basis. We analyzed entries in online blogs and forums and surveyed the opinions of local stakeholders and decision makers using a questionnaire. To collect published scientific knowledge, we conducted a structured literature review. Our results reveal a discrepancy between commonly found beliefs and the empirical knowledge supporting those beliefs: Dispersal of fish eggs by water birds was overall the most frequent explanation online and in the questionnaire. In the scientific literature, however, we found hardly any empirical research on passive fish egg dispersal. We propose research directions for how to close this gap of knowledge and suggest that future empirical studies on passive fish egg dispersal may be inspired by existing work on passive dispersal in aquatic invertebrates. Mitigating the belief‐evidence discrepancy on fish dispersal will be essential to better understand the patterns of fish biodiversity across landscapes, to counteract its losses, and inform management strategies for invasive fish species.     

Fish assemblage shifts and species declines in Alabama, USA streams

Abstract –  Recognition of faunal changes requires long-term monitoring, which is lacking for all but a very few streams. Fish surveys are often focused on single, often imperiled, species. While such studies meet the goals of monitoring single species, assemblage-based data are required for detection of assemblage change and declines in common species, and yet these studies are relatively rare. Assemblage-based data may be important in identifying potential ecosystem problems before the loss of ecosystem function that results from catastrophic biodiversity decline. In 2005–2006, we sampled fishes in three streams in the Chattahoochee River drainage, Alabama in order to assess fish assemblage persistence and individual species declines. To achieve these comparisons we used historic data from two time periods, 1970s and 1995. Although comparisons to historical collections were used conservatively, we found dramatic assemblage shifts over time, even using conservative metrics. Examination of individual species persistence over time in these watersheds uncovered species losses at both the site and stream scale. Metrics of similarity, persistence, and Spearman's rank correlation indicated low similarity of fish assemblages and high species turnover over time. Specifically, cyprinid species have been lost and have been replaced with more cosmopolitan species. Comparison of three time periods allowed the estimation of when assemblages changed through time. Changes in land use, increases in the human population and less overall water availability may be agents of habitat degradation partially responsible for fish faunal changes.