Phenotypic variation in a core collection of common bean (Phaseolus vulgaris L.) in the Netherlands

Forty accessions, forming a core collection of mainly bush type of the common bean (Phaseolus vulgaris L.) germplasm in the Netherlands, were evaluated for 14 qualitative and quantitative traits at the Agricultural University, Wageningen (WAU), the Netherlands in 1992. These and an additional 117 Dutch accessions, mainly collected in private home gardens, were also evaluated for phaseolin seed protein pattern, and morphological and agronomic traits at the International Center for Tropical Agriculture (CIAT, Spanish acronym), Cali, Columbia between 1987 and 1997. Multivariate and principal component analyses at both WAU and CIAT indicated existence of one large group with no discernable patterns among Dutch common bean collections of landraces, garden forms and cultivars. However, when phaseolin, an evolutionary, biochemical marker, was used as an initial classification criterion followed by use of morphological markers, the two major gene pools; Andean and Middle American with two races in each (Chile and Nueva Granada in Andean, and Durango and Mesoamerica in Middle American) were identified. The Andean gene pool was predominant (136 of 157 accessions), especially the race Nueva Granada (126 accessions) characterized by the bush determinate growth habit type I and T phaseolin. The new core collection comprised 31 accessions. Bean races Chile, Durango, and Mesoamerica were represented by 10, 7, and 14 accessions, respectively. Of the 9 French or snap bean accessions six possessed characteristics of race Mesoamerica and three belonged to Durango race. Occurrence of these and a large number of other recombinants strongly suggested considerable hybridization and gene exchange between Andean and Middle American gene pools, thus blurring the natural boundaries and forming a large single group of common bean germplasm in the Netherlands. The inter-gene-pool recombinants of both dry and French beans should be of special interest to breeders for use as bridging-parents for development of broad-based populations. This revised version was published online in July 2006 with corrections to the Cover Date.     

A core collection of common bean from the Iberian peninsula

Characterization of crop germplasm from specific regions helps understand the patterns of genetic variation that facilitates further germplasm collection, characterization, management and their more efficient utilization in genetics, breeding and other studies. Common bean (Phaseolus vulgaris L.) is a traditional crop in the Iberian Peninsula (Spain and Portugal) where subsistence farmers have been growing and maintaining their own cultivars since their introductions from the Americas in the sixteenth century. Our objectives were to: (i) characterize diversity in the landraces collected from the Iberian Peninsula and (ii) form a core collection. Of 388 landraces from the major production regions characterized for 34quantitative and 13 qualitative characters, including morphological, agronomic and biochemical traits, 74.7% had an Andean origin, 16.8% a Mesoamerican origin and 8.4% had seed mixtures or were recombinants between the two gene pools. Landraces of indeterminate climbing growth habit Type IV(47.2%) and bush determinate Type I(26.4%) with large (52.9%) and medium(27.4%) seeds of white (38.8%) and cream(25.9%) colour were predominant. Similarly, the ‘T’ phaseolin pattern and common bean race Nueva Granada were the most frequent(51%). Some exceptionally large-seeded landraces of Andean (e.g., PHA-0917 with119 g 100-seed weight^-1) and Mesoamerican (e.g., PHA-0399 with 66 g100-seed weight^-1) were found. These and other possible recombinants between the two gene pools merit further investigation. Fifty two landraces (13%) were chosen to form a core collection representing the genetic diversity in the Iberian Peninsula. This revised version was published online in July 2006 with corrections to the Cover Date.     

Andean beans (Phaseolus vulgaris L.) with resistance to the angular leaf spot pathogen (Phaeoisariopsis griseola) in southern and eastern Africa

Common beans (Phaseolus vulgaris) are separated into two distinct groups: Andean and Middle American. We identified CAL 143 as the first Andean bean with resistance to angular leaf spot disease caused by Phaeoisariopsis griseola. Angular leaf spot is the most widespread and economically important bean disease in southern and eastern Africa, and it is especially severe on the extensively grown Andean beans. Cal 143 was resistant in Malawi, South Africa, Tanzania, and Zambia, but it was susceptible in Uganda. This was attributed to the presence of races of P. griseola in Uganda not present in the other countries. We identified two additional Andean bean lines, AND 277 and AND 279, with resistance to angular leaf spot in Malawi. We also characterized the virulence diversity of 15 isolates of P. griseola from southern and eastern Africa into nine different races. Five of six isolates from Malawi and two of seven from Uganda, obtained from large-seeded Andean beans, were characterized into four different races considered Andean. These were compatible only or mostly with large-seeded Andean cultivars. The other eight isolates from Uganda, Malawi, and the Democratic Republic of Congo, obtained from a small- or medium-seeded Middle American beans, were characterized into five different Middle American races. These were compatible with Middle American and Andean cultivars. CAL 143 was resistant or intermediate under greenhouse conditions to all but one of the same 15 isolates from southern and eastern Africa, but it was susceptible to an isolate from Uganda obtained from a medium-seeded Middle American bean. This revised version was published online in July 2006 with corrections to the Cover Date.     

Segregation for performance in recombinant inbred populations resulting from inter-gene pool crosses of common bean ( Phaseolus vulgaris L.)

The germplasm of cultivated common bean exhibits a lower level of genetic diversity within each geographical gene pools (Mesoamerican and Andean) compared to that of the respective wild ancestors. Crosses between these two gene pools potentially provide a source of additional genetic diversity but their progenies have been characterized by phenotypic abnormalities and reduced productivity. In order to gain additional insights into this problem, we examined the segregation for performance in two recombinant inbred populations (RIPs) resulting from Mesoamerican × Andean crosses in three contrasting environments and two years. The two RIPs – ‘California Dark Red Kidney’ (of Andean origin) × ‘Yolano’ (Mesoamerican), n = 150, and A55 (Mesoamerican) × G122 (Andean), n = 67 – were grown in replicated field tests to assess the agronomic performance of each recombinant inbred line. Both populations exhibited, on average, greater days to maturity (DTM), lower biomass growth rate (above-ground dry weight/DTM), lower economic growth rate (seed yield/DTM), and lesser harvest index. In contrast with the conclusions of earlier experiments, there was no evidence from the field trials for a genetic association (due to linkage or pleiotropy) between seed weight and economic growth rate, but there may be a genetic association between seed weight and life cycle length. We compare the results of these studies with earlier experiments on inter-gene pool recombinant populations of common beans and relate our observations of diminished performance to models of speciation mechanisms. This revised version was published online in July 2006 with corrections to the Cover Date.     

Random amplified polymorphic DNA (RAPD) markers variability among cultivars and landraces of common beans (Phaseolus vulgaris L.) of south-Brazil

To evaluate the variability among cultivars and landraces of common bean(Phaseolus vulgaris L.), 15 cultivars and 18 landraces of common bean (Phaseolus vulgarisL.), a undefined species of Phaseolus,two landraces of Vigna angularis L., and a landrace of soybean (Glycine maxL.), were screened with fifteen oligonucleotide primers in PCR reactions. An average of 20.3 RAPD bands were scored per primer. A total of 304 amplification products were scored of which 88.8% were polymorphic among Phaseolus genotypes. Based on the RAPD markers, four major clusters were formed. Three clusters corresponded to the soybean, to the two Vigna angularis landraces, and to the Phaseolus sp. landrace, respectively. The fourth cluster include all the landraces and cultivars of Phaseolus vulgaris. This large group could be separated into three subgroups that were correlated with the phaseolin patterns and the average seed weight of the genotypes. The analysis shows that most of the landraces collected in South Brazil (17 out of 18) belong to the Andean gene pool, and most of the cultivars (13 out of 15) belong to the Middle American gene pool. This revised version was published online in July 2006 with corrections to the Cover Date.     

Genetic diversity of some surviving on-farm Italian common bean (Phaseolus vulgaris L.) landraces

This study was undertaken to estimate the level of variation among and within 33 local populations belonging to seven Italian common bean landraces, by analysing the polymorphism of seed storage proteins, simple sequence repeat (SSR) and amplified fragment length polymorphism (AFLP) molecular markers. The nutritional seed quality of the landraces studied was also investigated. Results showed that the landraces retain a considerable level of heterogeneity. Use of both biochemical and molecular approaches provided a picture of the genetic diversity of each landrace. Cluster analyses based on Nei's genetic distances and Jaccard's similarity index as defined by SSR and AFLP markers, respectively, showed that all populations clustered into two groups corresponding to the Andean and the Mesoamerican gene pools. Knowledge of the genetic structure of a landrace is fundamental in elaborating strategies, which involve the local farmers, allowing us to improve and, at the same time, safeguard the genetic integrity of landrace genetic resources.     

Phaseolin Diversity in the Tepary Bean, Phaseolus acutifolius A. Gray

The tepary bean (Phaseolus acutifolius A. Gray) is grown mainly in and regions of Mexico and the southwestern U.S. as a subsistence crop by small farmers. It is also a store of genetic variability for traits such as disease and pest resistance and stress tolerance to improve the common bean (P. vulgaris L.). To determine geographic patterns of variation and the influence of domestication on genetic variability, the genetic diversity of phaseolin, the major seed storage protein, was characterized among 55 wild and 8 cultivated teparies using polyacrylamide gel electrophoresis. Fifteen electrophoretic phaseolin patterns were identified among wild forms, whereas only one pattern was exhibited by cultivars. This result suggests a single domestication in this species leading to a strong reduction in diversity. An additional finding is the divergence m phaseolin types between populations east and west of the Sierra Madre Occidental mountains.     

Agronomical and quality traits of runner bean germplasm and implications for breeding

White runner bean landraces are greatly appreciated in the North highlands of Spain due to their excellent culinary seed quality. Runner bean cultivars are grown like pole beans. Diversity within a runner bean collection of 31 accessions from the Iberian Peninsula (Spain and Portugal) was examined using morphological, agronomical and seed quality traits. Landraces showed significant differences for most of the agronomical and seed quality traits studied except for seeds per pod, water absorption, seed coat tenderness and floury texture. Runner bean landraces showed sufficient variability to select inbred lines for future breeding. Genotype × environment interaction was significant for days to first flowering, days to first dry pod, seeds per pod and seed length. The majority of physical and nutritional seed quality traits studied which are important to determine the commercial value of a variety were not subject to environmental influences. Different selection pressures affecting to the runner bean genetic material could have occurred in several regions of the Iberian Peninsula. Extra-large and high yielding runner bean germplasm was identified and represents a valuable source of genetic diversity that has potential for development of improved cultivars to be chosen for commercialisation. This revised version was published online in July 2006 with corrections to the Cover Date.     

黑龙江省大豆遗传结构及遗传多样性分析

利用22个表型性状和60个微卫星(simple sequence repeat, SSR)位点对黑龙江省140份代表性种质(78份地方品种和62份育成品种)进行分析, 根据UPGMA (unweighted pair group method with arithmetic mean)和Model-base对SSR数据进行遗传结构划分。结果表明, 参试品种可分为2大类群, 第II类群的各项多样性指标均高于第I类群, 2个类群遗传距离为0.2427;PCO结果显示这2个类群分布在不同区域, 这与地理来源和育成年代密切有关。依据品种类型分为育成品种和地方品种两组, 后者的各项多样性指标均高于前者, 两组间的遗传距离为0.1131。依据表型数据的PCO分析表明, 分布区域与品种类型有关, 与SSR结构分类的结果吻合度低, 两组品种主要在3个主成分的6个表型性状上有所不同。它们不是2个相对独立的遗传群体, 根据分子标记和表型分类各有特点;建议在种质遗传多样性研究中将分子数据和表型数据结合起来。     

Growth habit and gene pool effects on inheritance of yield in common bean

Summary To satisfy farmer and consumer preferences, breeding efforts to increase yield potential in common bean must take into account the interrelated effects of growth habit, seed size, maturity, and gene pool on yield expression in segregating populations. To examine the relationships among these traits, a genetic study was conducted to determine the effect of growth habit on yield and seed size in crosses among five bean lines from diverse gene pools. Two parental bean lines had determinate, type I growth habits and large seed size typical of the Neuva Granada-Andean gene pool. Two other lines were tropical Mesoamerican types with type II growth habits and small seed size; and the fifth line, G13625, a landrace of the Jalisco gene pool from the Mexican highlands, had a type IV climbing growth habit and medium seed size. Individual F₂ plants from each cross and parental lines were evaluated for growth habit and yield component traits under high input field conditions. The following season, the evaluations were repeated on random F₃ plants. Of the five parental lines, only G13625 showed significant GCA effects for yield in both the F₂ and F₃ generations. Improved yielding ability of G13625 progeny was associated with an increased expression of climbing bean growth habit traits: guide length, climbing ability, node number on main stem, and plant height. Crosses between Andean x Mesoamerican and Andean x Jalisco genotypes, as well between growth habit type I (Andean x Andean) and between type II (Mesoamerican x Mesoamerican) had very low parent-offspring heritability values for yield. Yield heritability was only significant for crosses between Mesomerican x Jalisco gene pools. An apparent simple genetic control of growth habit modification towards semi-climbing and climbing types is proposed as the major reason for increased yields in these crosses. No genetic linkage between genes controlling growth habit and seed size was detected which might restrict the development of high yielding large-seeded type II lines.     

Variation of seed storage proteins in landraces of common bean (Phaseolus vulgaris L.) from Basilicata,Southern Italy

Summary Twenty landraces of common bean (Phaseolus vulgaris L.) from Sarconi and Rotonda two locations of Basilicata, a Southern Italy region, were screened for variation in seed storage proteins (phaseolin and phytohemagglutinin) by polyacrylamide gel electrophoresis (SDS/PAGE and IEF-SDS/PAGE). No variation of the main seed protein fractions was observed within each landrace. Phaseolin patterns type C and T were exhibited from the landraces; the type C resulted predominant with a frequency of 70%. Only the C type was observed for the landraces of Rotonda, T and C for those from Sarconi. Two variants were observed for the phytohemagglutinin by SDS-PAGE, one was common to eighteen landraces. However, these variants submitted to IEF-SDS/PAGE resulted similar to the type T_G2described by Brown. The importance to safeguard these landraces is stressed by the observation that the more spread commercial cultivars of common bean growing in Southern-Italy had a T phaseolin pattern. A reduction of C type diffusion could produce the loss a typical trait of common bean in Mediterranean regions.     

Selection for seed yield in Middle American versus Andean × Middle American interracial common-bean populations

The objective of this study was to compare the seed yield, seed weight, and maturity of random lines derived from two contrasting populations of common bean ( Phaseolus vulgaris L.): Middle American (TR 7790) and Andean × Middle American (TR 7791). TR 7790 involved crosses between common-bean races of Middle American origin only (Mesoamerica and Durango), whereas TR 7791 involved crosses between races of Middle American and Andean origin (Mesoamerica and Nueva Granada). A total of 85 random lines from each of these two double-cross, interracial populations, a bulk sample of both populations, and all parents were evaluated in a replications-in-set design in eight environments in Colombia between 1991 and 1993. The mean yields of parents, population bulk, and lines from TR 7790 were significantly higher (P < 0.05) than those of TR 7791. Six lines in TR 7790 and nine lines in TR 7791 yielded significantly higher (P < 0.05) than the mean of their parents. Four lines from TR 7790 out-yielded the highest-yielding line from TR 7791. Moreover, while three lines from TR 7790 out-yielded its best parent, none of the lines from TR 7791 out-yielded its highest yielding parent. Thus, substantial yield gains should be expected from interracial populations within the Middle American group of common beans, whereas selection for higher seed yield from Andean × Middle American populations would seem problematic.     

Diversity in seed quality traits of common bean populations from Basilicata (Southern Italy)

The diversity of nutritional and culinary traits in 21 populations of common bean from the Basilicata region was studied for three consecutive harvests (1995‐97). The results were compared with the six commercial cultivars widely grown in the region. Some populations deserve particular attention since they had large seeds, high protein content, low trypsin inhibitor levels and short cooking time. The cluster analysis showed that 18 populations clustered in two main groups and that the bush populations were clearly distinguishable from the climbing ones. When phaseolin type and some plant morphological traits were added to the nutritional and culinary traits to classify these populations, it was observed that they resembled the race Peru (Andean gene pool).     

Pattern of variation for seed size traits and molecular markers in Italian germplasm of Phaseolus coccineus L.

Variation in Italian germplasm of Phaseolus coccineus L. was assessed for seed traits and molecular markers. A total of 130 seeds and seedlings, five for each of 21 Italian landraces, an Italian commercial cultivar and four Mesoamerican landraces of P. coccineus, were analysed using seven selected PCR markers: three RAPDs, two ISSRs and two ETs. Seed weight of the Mesoamerican landraces was ≤1 g, whereas that of the Italian landraces varied from 1 g to 2.5 g and was related to their origin. Oval shape was more frequent, with round shape observed only in Mesoamerican landraces. Three seed coat colours were observed: white, violet mottled or spotted black and buff spotted brown, also this trait was related to the origin. The level of polymorphism detected by molecular markers was low but with significant discriminant power. ISSRs were the most effective markers prone to unravel molecular polymorphism. The within accession component of variation exceeded that among accessions, as expected for an allogamous species. However correct classification of the individuals was achieved performing either discriminant analysis of the seed phenotypic traits or cluster analysis of seedling similarity measure based on the whole banding patterns obtained by the three marker types. Our data suggest that the Italian farmers, starting with ancestral Mesoamerican runner bean introductions in Europe, bred their own landraces through selection for seed size and seed coat colour, but occasional gene flow maintained variability within landraces bred by different farmers in the same Italian Region. Selection favored molecular and seed trait uniformity within several landraces making them suitable for certification.     

Potential loss of unique genetic diversity in tomato landraces by genetic colonization of modern cultivars at a non-center of origin

We report the genetic diversity of tomato landraces from Myanmar, with reference to worldwide tomato accessions. Ten simple sequence repeat markers were screened and used to create diversity profiles of tomato germplasm. A total of 133 alleles were amplified from the germplasm investigated; alleles specific to landraces from Myanmar were also observed. Higher genetic diversity for the Myanmar landraces highlighted the broad genetic base of tomato germplasm. Principal component analysis showed that most of the Myanmar landraces were divergent from other accessions. The different approaches used to analyse landrace diversity documented the broader genetic base of germplasm from Myanmar, which is a non‐center of origin for tomato. Genetic diversity in the landraces may be attributable to diverse production systems used by different ethnic groups in Myanmar, ranging from natural hydroponics in eastern areas, to slash‐and‐burn fields in mountain areas and shifting cultivation in many parts of the country. The availability of uniform and high‐yielding cultivars/hybrids threatens the valuable landraces in Myanmar. We emphasize the need to evaluate tomato germplasm from Myanmar for different traits and sustainable use with simultaneous conservation.     

Inter simple sequence repeat (ISSR) markers as a tool for the assessment of both genetic diversity and gene pool origin in common bean (Phaseolus vulgaris L.)

In this study, we report the use of ISSR to assess genetic diversity and to determine the relationships among ten cultivars of common bean developed in Argentina and three materials from France. ISSR markers resolved two major groups corresponding to the Andean and Mesoamerican gene pools of common bean. We compared the results of previous analysis, performed with RAPD markers (Galván et al., 2001), with the results generated by means of ISSR. It appears that ISSR are better tools than RAPDs to identify beans by gene pool of origin though they did not revealed as many differences between individuals as RAPDs. This revised version was published online in July 2006 with corrections to the Cover Date.     

Improvement of large-seeded common bean cultivars under sustainable cropping systems in Spain

Approaches are needed to broaden the genetic base and improve earliness and yield potential of large-seeded beans under sustainable cropping systems. The objective of this research was to develop adapted dwarf bean populations having a commercial seed quality and yield suitable for the production in the South of Europe. The original base populations were produced from crosses between genotypes within each Mesoamerica, Nueva Granada and Peru races, and between Peru and Nueva Granada, and Mesoamerica and Nueva Granada races. Visual mass selection for plant performance was practised in the F₂ and F₃ generations. In the F₄ and F₅, single plants were harvested under two cropping systems (sole cropping and intercropping with maize). From F₄, selection was based on precocity, combined with seed yield and seed commercial type. The F_4:7 selected lines from each original population were compared with their parents and five checks at four environments and two cropping systems. Differences among environments, populations, parents and checks were observed for all traits. Under intercropping with maize, there was a 50% reduction in seed yield. Yield of parents and checks belonging to Andean South American races, intraracial (Nueva Granada × Nueva Granada) and interracial (Nueva Granada × Peru) populations, was higher than that of those of Middle American origin. Intraracial crosses within large-seeded Andean South American (Peru race) and Middle American gene pools (Mesoamerica race) did not produce lines yielding more than the highest yielding parent. Only two large-seeded lines selected from crosses between small- and large-seeded gene pools out-yielded the best parent and check cultivar.     

Comparative analysis of diversity based on morpho-agronomic traits and microsatellite markers in common bean

Morpho-agronomic traits and microsatellite markers were used to survey genetic diversity in 115 common bean genotypes that included 70 Indian landraces, 24 released varieties and 21 exotic accessions. Twelve morpho-agronomic traits, namely, days to 50% flowering, leaflet length, leaflet width, pod length, pod width, number of pods per plant, days to maturity, seed length, seed width, number of seeds per pod, 100 seed weight and seed yield per plant were studied. Field data of two consecutive years were subjected to multivariate analysis as proposed by Mahalanobis’s D²-statistics, Tochers method of clustering and combined analysis of variance. Seventeen microsatellite markers were also used to examine genetic diversity at molecular level that showed polymorphic information content (PIC) in the range of 0.00–0.684. Dendrograms based on Euclidean distances and UPGMA analysis showed the presence of majority of released varieties into single cluster, which pointed toward their low genetic base in comparison to indigenous landraces and exotic germplasm. Significant correlation existed between morphological genetic distance and microsatellite genetic distance tested by Mantel test (r = 0.876).     

Pathogenic variation in, sources of, and breeding for resistance to Phaeoisariopsis griseola causing angular leaf spot in common bean

If we are to breed common bean (Phaseolus vulgaris L.) for durable resistance to diseases, we must understand pathogenic variation and find sources of resistance. Our first objective was to determine the patterns of pathogenic variation found among isolates of Phaeoisariopsis griseola (PG), the fungus that causes angular leaf spot (ALS) in common bean. We characterized 433 PG isolates from 11 Latin American and 10 African countries, using differential cultivars, isozymes, and/or random amplified polymorphic DNA (RAPD) markers. We also systematically screened, for ALS resistance, common bean accessions from the world collection held at CIAT, and assessed the progress so far made in breeding for resistance to ALS. Despite their great diversity within and between countries on both continents, the PG isolates were classified into two major groups: Andean, and Middle American. Although each group had internal differences for virulence, and biochemical and molecular characteristics, the ‘Andean’ PG isolates were more virulent on common beans of Andean origin, than on those of Middle American origin, thus, suggesting a host-pathogen co-evolution. The ‘Middle American’ PG isolates, although more virulent on common beans from Middle America, also attacked Andean beans, thus, exhibiting a much broader virulence spectrum. To find sources of resistance, we tested 22,832 common bean accessions against naturally occurring PG isolates in the field at CIAT's Experiment Station, Quilichao, Colombia, between 1985 and 1992. The resulting 123 intermediate (scores of 4 to 6) and resistant (scores of 1 to 3) accessions were then tested in the greenhouse against selected 14 PG isolates of diverse origins. Nineteen accessions were intermediate or resistant to at least 13 of 14 PG isolates. Similarly, of 13,219 bred lines tested in the field between 1978 and 1996, 89 were intermediate or resistant. Of these, 33 bred lines proved intermediate or resistant to at least eight of nine PG isolates to which they were challenged in the greenhouse. We suggest that, to breed for durable resistance to ALS, common bean populations should be developed from crosses between Andean and Middle American gene pools. The populations should then be systematically evaluated and selected against the broadest range of the most virulent PG isolates of diverse evolutionary origins. This revised version was published online in August 2006 with corrections to the Cover Date.     

菜豆种子蛋白的变异和品种鉴定

用两种线性浓度梯度(8—20%和12—20%)的SDS聚丙烯酰胺凝胶电泳分析了来自14个国家的54个菜豆品种的种子蛋白.结果表明:多数多肽在品种间有淌度变异,变异发生在8个分子量区域.我们推荐本方法用于菜豆品种鉴定.种子蛋白谱与种皮颜色没有相关性.除3个品种外,凡菜豆球蛋白含3主要多肽的品种都是茎直立的矮生类型;而只有2主要多肽的品种都是茎缠绕的蔓生类型.看来,种子蛋白还可能在育种中预测其他性状.