Evaluation of the removal of impassable barriers on anadromous salmon and steelhead in the Columbia River Basin

Despite the popularity of barrier removal as a habitat restoration technique, there are few studies that evaluate the biological effects of restored stream crossings. An extensive post‐treatment study design was used to quantify fish populations (e.g. species, life stage, abundance) and habitat attributes (e.g. gradient, geomorphic channel units) at 32 culvert removal or replacement projects to determine their effectiveness in restoring habitat access for juvenile salmon, Oncorhynchus spp., and steelhead, O. mykiss (Walbaum), in the Columbia River Basin, USA. Anadromous fish (steelhead, Chinook salmon O. tshawytscha [Walbaum]) abundance, juvenile steelhead abundance and habitat conditions were not significantly different between paired reaches (i.e. upstream and downstream of former barrier sites), suggesting these sites are no longer full barriers to movement. This suggests that barrier removal projects on small Columbia Basin streams provide adequate fish passage, increased habitat availability and increased juvenile anadromous fish abundance immediately upstream of former barriers.     

Potential trophodynamic and environmental drivers of steelhead (Oncorhynchus mykiss) productivity in the North Pacific Ocean

Information on prey availability, diets, and trophic levels of fish predators and their prey provides a link between physical and biological changes in the ecosystem and subsequent productivity (growth and survival) of fish populations. In this study two long‐term data sets on summer diets of steelhead (Oncorhynchus mykiss) in international waters of the central North Pacific Ocean (CNP; 1991–2009) and Gulf of Alaska (GOA; 1993–2002) were evaluated to identify potential drivers of steelhead productivity in the North Pacific. Stable isotopes of steelhead muscle tissue were assessed to corroborate the results of stomach content analysis. We found the composition of steelhead diets varied by ocean age group, region, and year. In both the GOA and CNP, gonatid squid (Berryteuthis anonychus) were the most influential component of steelhead diets, leading to higher prey energy densities and stomach fullness. Stomach contents during an exceptionally warm year in the GOA and CNP (1997) were characterized by high diversity of prey with low energy density, few squid, and a large amount of potentially toxic debris (e.g., plastic). Indicators of good diets (high proportions of squid and high prey energy density) were negatively correlated with abundance of wild populations of eastern Kamchatka pink salmon (O. gorbuscha) in the CNP. In conclusion, interannual variations in climate, abundance of squid, and density‐dependent interactions with highly‐abundant stocks of pink salmon were identified as potential key drivers of steelhead productivity in these ecosystems. Additional research in genetic stock identification is needed to link these potential drivers of productivity to individual populations.     

Variation in juvenile steelhead (Oncorhynchus mykiss) dispersal in relation to age and growth performance

Volitional dispersal is a ubiquitous strategy characteristic of species across major faunal groups. Dispersal during the juvenile life stage is of interest because early performance can be critical for determining future success (survival/reproduction). For salmonids, dispersal can influence local density, competition, individual growth and survival, though drivers of dispersal at meso-scales are rarely quantified. Here, we evaluate dispersal of tagged juvenile steelhead (Oncorhynchus mykiss) through habitat units in extended stream reaches (500 m) at sites across a watershed from July to October 2017. Our aim was to quantify the frequency and spatial extent of dispersal, identify links to biotic and abiotic factors, evaluate the implications for individual growth and test for associations between dispersal and migration initiation. Dispersal rates varied between sites, but were consistently higher for age 1+ than for age 0 steelhead (avg. 21% vs. 6% respectively). Age 1+ dispersal probability was positively correlated with time between recapture events and body mass, and negatively correlated with growth rate, maximum temperature experienced and age 1+ density. At sites where there appeared to be growth benefits to remaining sedentary compared to moving, proportionally fewer fish performed dispersal. We found no links between dispersal and timing or probability of migration initiation the following spring. Our results support the hypothesis that although dispersal over intermediate scales (10–1,000 m) might be rare, it could be an important strategy that permits fish to seek out better opportunities (foraging, shelter or otherwise) in underutilised areas.     

Evaluation of angler reporting accuracy in an off‐site survey to estimate statewide steelhead harvest

Accuracy of angler‐reported data on steelhead, Oncorhynchus mykiss (Walbaum), harvest in Idaho, USA, was quantified by comparing data recorded on angler harvest permits to the numbers that the same group of anglers reported in an off‐site survey. Anglers could respond to the off‐site survey using mail or Internet; if they did not respond using these methods, they were called on the telephone. A majority of anglers responded through the mail, and the probability of responding by Internet decreased with increasing age of the respondent. The actual number of steelhead harvested did not appear to influence the response type. Anglers in the autumn 2012 survey overreported harvest by 24%, whereas anglers in the spring 2013 survey under‐reported steelhead harvest by 16%. The direction of reporting bias may have been a function of actual harvest, where anglers harvested on average 2.6 times more fish during the spring fishery than the autumn. Reporting bias that is a function of actual harvest can have substantial management and conservation implications because the fishery will be perceived to be performing better at lower harvest rates and worse when harvest rates are higher. Thus, these findings warrant consideration when designing surveys and evaluating management actions.     

Summer habitat and movements of juvenile salmonids in a coastal river of Washington State

We investigated the summer ecology of juvenile steelhead trout Onchorhynchus mykiss and Chinook salmon O. tshawytscha in the context of habitat use and movement behaviour. The study area was a 14.8 km section of the Chehalis River, Washington, and is of particular interest due to recent proposals for both a flood retention dam and restoration actions in this watershed. Ten study reaches were paired in distance upstream and downstream from a central point where a passive integrated transponder antenna array was operated between late June and September 2014. Juvenile densities for each species were associated with reach‐scale habitat and temperature characteristics. Juvenile steelhead underwent upstream and downstream movements up to 7 km, although more fish from further away moved downstream than upstream. Juvenile steelhead repeated horizontal movements throughout the study period, but daily detections were not associated with temperature or flow. The majority (81%) of steelhead movements occurred between the hours of 04:00–07:00 and 18:00–21:00. Juvenile Chinook underwent a downstream migration that was nearly complete by the end of August. Most juvenile Chinook were detected just once and movements occurred on days with warmer stream temperature and higher flows. The majority of Chinook movements occurred at night. Although juvenile salmonids are often thought to have small home ranges during summer months, our results suggest that horizontal movements may be more prevalent than previously thought. Summer habitat should be defined by a network of suitable rearing reaches with connectivity available in both upstream and downstream directions.     

Abiotic and biotic associations between the round goby Neogobius melanostomus and tubenose goby Proterorhinus marmoratus with the endangered northern madtom Noturus stigmosus in Canada

1. Quantifying habitat associations and threats to the persistence of imperilled species is a fundamental step for initiating species recovery efforts, but the traits associated with species imperillment (e.g. rarity and vulnerability to stressors) also limit the ability to empirically inform recovery strategies. Novel sampling designs and modelling approaches are therefore needed to quantitatively assess habitat associations and the threats to species persistence.
2. To improve the understanding of habitat associations and threats for one of the rarest endangered freshwater fish species in Canada, northern madtom (Noturus stigmosus), two‐species occupancy models were developed with two invasive gobies: round goby (Neogobius melanostomus) and tubenose goby (Proterorhinus marmoratus). Models were parameterized with data from a multi‐year benthic trawling survey of two large Great Lakes tributaries in southern Ontario, Canada, and subsequently used to evaluate the need for reducing measurement error with future sampling efforts.
3. The probability of detecting northern madtom in the St. Clair (0.163) and Thames (0.194) rivers was low compared with round goby (St. Clair, 0.827; Thames, 0.833) and tubenose goby (St. Clair, 0.297). The best occupancy models indicated a negative association between northern madtom and round goby in the St. Clair River and the importance of gravel substrate for northern madtom.
4. Up to 16 repeated non‐detections using benthic trawls are needed to be 95% confident that northern madtom is absent at a site, indicating that current sampling approaches are likely inadequate.
5. Despite low detection probabilities, intensive trawling surveys combined with the two‐species occupancy modelling framework provided vital information for describing habitat associations for northern madtom and identified a significant negative association with round goby. Nonetheless, alternative sampling methods to improve the detection probability of northern madtom would allow a more robust evaluation of habitat associations and would provide more information on the negative association with round goby.

     

Density-dependent habitat selection and the ideal free distribution in marine fish spatial dynamics: considerations and cautions

Current methods and theory used in the study of the spatial dynamics of marine fish are problematic. Positive relationships between population abundance and occupied area are typically interpreted as evidence of density‐dependent habitat selection. However, both abundance and area may co‐vary with an un‐parameterized variable, such as a density‐independent effect. In addition, if density‐dependent habitat selection is present, population growth rates in optimal habitats would be expected to be lower than in marginal habitats. This same pattern can also evolve from a large‐scale, spatially autocorrelated change in a density‐independent factor. The theory underlying density‐dependent habitat selection, the ideal free distribution, can be tautological when no a priori information of how habitat suitability changes with density is known. In this case, an ideal free distribution can be defined for any pattern of habitat‐specific population growth rates. However, these problems are not insurmountable and solutions may be found by considering spatial variation in proxies of fitness and explicitly allowing for the relative importance of habitat selection (density dependent) and environmental (density independent) effects to vary with spatial scale.     

Do habitat measurements in the vicinity of Atlantic salmon (Salmo salar) parr matter?

Atlantic salmon, Salmo salar L., parr habitat characterisation is usually performed by in situ measures of key environmental variables taken at the exact fish location if the fishing gear allows precise pinpointing of this location, or in large sampling sections covering a river reach or mesohabitat, often ignoring variability in the immediate vicinity around individual fish. These data may be critically important in the development and validation of habitat preference models. The influences of seven increasing distances of measures, the variation of the number of considered measures and the depth of velocity measurement (bottom or 0.6 of the depth) in the calculations of HSI (Habitat Suitability Index) from a multiple‐experts fuzzy model of Atlantic salmon parr habitat were tested. When a parr was present, six measures collected in a 50‐cm radius around the fish to provide an average measure as input data and velocity measured at 60% of the depth gave the highest HSI values. These results show some potential for the use of an intermediate study scale, between micro‐ and mesohabitat, and questions how fish habitat conditions are currently measured.     

Linking small pelagic fish and cetacean distribution to model suitable habitat for coastal dolphin species,Delphinus delphis and Tursiops truncatus,in the Greek Seas (Eastern Mediterranean)

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Interactions between body mass and water temperature cause energetic bottlenecks in juvenile steelhead

Across taxa, it is generally accepted that there are fitness advantages to rapid growth early in life. For stream‐dwelling salmonids, however, high temperatures and associated energetic costs during the summer growing season might offset or even prevent the competitive advantage of large body size. Our overall objective was to understand the relative importance of factors that can cause variation in growth rates in an age‐0 cohort of wild steelhead (Oncorhynchus mykiss) in Idaho, USA, where temperatures approach, and temporarily exceed, their tolerance level. For individually tagged fish inhabiting the same stream reach, we found that growth rates were negatively related to fish mass (slopes of the two best approximating models were both ?0.024). Comparing growth rates from 16 different stream reaches throughout the watershed, we found that temperature‐induced metabolic cost was the single best approximating model (AIC w_i = 1.0) of the variation in individual growth rates. The bioenergetic model showed that mass‐specific metabolic costs decreased with mass, but the absolute energetic demands increased over the same size range. Because temperature had a multiplicative effect on metabolic cost, our results suggest that the effect of food limitation increased with fish size. We conclude that high water temperatures pose energetic bottlenecks and can be a potentially strong mechanism limiting growth in juvenile salmonids in summer, particularly as streams in the region experience warming trends.     

Modelling the distribution of the pan‐continental invasive fish Pseudorasbora parva based on landscape features in the northern Kyushu Island,Japan

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Predicting use of habitat patches by spawning horseshoe crabs (Limulus polyphemus) along a complex coastline with field surveys and geospatial analyses

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Biotic and abiotic controls on body size during critical life history stages of a pelagic fish,Pacific herring (Clupea pallasii)

Variation in growth and body size during critical life history stages can have important implications for life history schedules and survivorship. For Pacific herring (Clupea pallasii), there is still debate as to whether juvenile body size is governed by density‐dependent or ‐independent processes and few have evaluated whether the relative importance of either process shifts over the course of early ontogeny. We used a unique data set consisting of seasonal measurements of abundance, body size, and spatial distribution within a semi‐enclosed basin of Puget Sound (Washington State, U.S.A.) to measure the relative importance of temperature and cohort abundance on body size at distinct time periods, and evaluated whether density‐dependent habitat shifts might be responsible for density‐dependent growth. Over the 9 years of sampling (2001–2010) midsummer body size was positively related to temperatures experienced during the egg/yolk sac and larval stages and unrelated to cohort abundance. However, fall body size was negatively correlated with abundance and uncorrelated with both midsummer body size and temperature, indicating a shift from density‐independent to density‐dependent control over the course of the growing season. Thus, density‐dependent effects may supplant density‐independent effects exhibited early in herring life history. Our data on spatial distributions of herring and their zooplankton prey indicate that density‐dependent reductions in growth may be explained by density‐dependent habitat shifts that lead to reduce overlap of herring with zooplankton. Evidence of density‐dependent growth in marine fish populations is often attributed to exploitative competition, but our results suggest that these patterns may partly be mediated by density‐dependent distribution expansions in to prey‐poor habitat.     

Microhabitat preferences of fish assemblages in the Udzungwa Mountains (Eastern Africa)

Environmental flow assessment (EFA) involving microhabitat preference models is a common approach to set ecologically friendly flow regimes in territories with ongoing or planned projects to develop river basins, such as many rivers of Eastern Africa. However, habitat requirements of many African fish species are poorly studied, which may impair EFAs. This study investigated habitat preferences of fish assemblages, based on species presence–absence data from 300 microhabitats collected in two tributaries of the Kilombero River (Tanzania), aiming to disentangle differences in habitat preferences of African species at two levels: assemblage (i.e. between tributaries) and species (i.e. species‐specific habitat preferences). Overall, flow velocity, which implies coarser substrates and shallower microhabitats, emerged as the most important driver responsible of the changes in stream‐dwelling assemblages at the microhabitat scale. At the assemblage level, we identified two important groups of species according to habitat preferences: (a) cover‐orientated and limnophilic species, including Barbus spp., Mormyridae and Chiloglanis deckenii, and (b) rheophilic species, including Labeo cylindricus, Amphilius uranoscopus and Parakneria spekii. Rheophilic species preferred boulders, fast flow velocity and deeper microhabitats. At the species level, we identified species‐specific habitat preferences. For instance, Barbus spp. preferred low flow velocity shallow depth and fine‐to‐medium substratum, whereas L. cylindricus and P. spekii mainly selected shallow microhabitats with coarse substrata. Knowledge of habitat preferences of these assemblages and species should enhance the implementation of ongoing and future EFA studies of the region.     

Growth, Condition, and Size Distribution of Paddlefish, Polyodon spathula, Juveniles Reared in Ponds at Three Densities

Abstract.— A study was conducted to determine the effect of increasing density on growth and size distribution of paddlefish, Polyodon spathula, juveniles reared in ponds. Feed‐trained paddlefish of mean weight (±SE) 25.8 ± 1.1 g were randomly stocked into nine 0.02‐ha ponds at 12,355, 18,533, and 24,710 paddlefish/ha, three replications per treatment. The fish were fed daily in excess of what they would eat for 97 d, beginning with a floating trout diet containing 45% protein and 16% lipid and then transferring to a floating catfish diet containing 32% protein and 4.5% lipid. Survival at harvest was not significantly different (P > 0.05) among treatments and averaged 90%. Mean final weights (±SD) for the low‐, middle‐, and high‐density treatments were 205.2 ± 54.1, 174.8 ± 53.2, and 178.6 ± 51.4 g, respectively. Best‐fit distributions centered on these means were lognormal. The low‐density distribution was significantly different (P < 0.05) from the two higher densities, which were not significantly different from each other (P > 0.05). Paddlefish weight at the minimum target length of 35 cm was estimated to be 100 g by regression analysis. The probability of paddlefish reaching or exceeding 100 g was 90% for the low‐density treatment. For the two higher densities, probabilities were 79 and 78%, respectively. Mean Fulton’s condition factors (FCFs) (±SD) were 250 ± 19, 242 ± 4, and 256 ± 37 for the low‐, middle‐, and high‐density treatments, respectively. The FCF for the middle‐density treatment was significantly lower than for the low‐ and high‐density treatments (P < 0.05), which were not significantly different from each other (P > 0.05). CV, feed conversion ratio, and relative growth were not significantly different (P > 0.05) among treatments and averaged 0.43, 1.50, and 5.45, respectively. Monoculture of paddlefish juveniles in ponds results in a hierarchic size structure when density is at least greater than 12,355 paddlefish/ha. The effect is enhanced with increasing density but becomes asymptotic as density approaches 18,533 paddlefish/ha. Feeding in excess does not ameliorate the effect.     

Detection of density‐dependent growth at two spatial scales in marble trout (Salmo marmoratus) populations

Vincenzi S, Crivelli AJ, Jesensek D, De Leo GA. Detection of density‐dependent growth at two spatial scales in marble trout (Salmo marmoratus) populations.
Ecology of Freshwater Fish 2010: 19: 338–347. © 2010 John Wiley & Sons A/S Abstract – Density‐dependent body growth has often been observed in freshwater salmonid populations. Several studies suggest this compensatory pattern as a potential mechanism of population regulation. The choice of the spatial scale is important for the detection of density‐dependent growth, as study areas need to be of the appropriate size to capture the density of conspecifics actually experienced by individuals over the preceding growth period. Here, we used four marble trout (Salmo marmoratus) populations (Gatsnik, Gorska, Huda and Zakojska) living in Slovenian stream to study the relationships between early density of marble trout and subsequent body growth. As streams are divided in sectors delimited by natural barriers that prevent or strongly limit movement of individuals, we tested the relationship between early density and body size through the lifetime at two spatial scales, that is, sector level (for Gatsnik and Zakojska) and whole stream level (the four populations were pooled). Sector length in Gatsnik and Zakojska ranged from 113 to 516 m. At both sector and whole stream level, temporal data were pooled. Growth declined significantly with increasing density both at the sector and whole stream levels, and the density‐dependent relationship was described by negative power curves. However, at the sector level the density‐dependent pattern was stronger in Gatsnik, a stream in which fish could move across sectors, than in Zakojska, where upstream movement across sectors is prevented by waterfalls.     

Forgotten fishes: What is the future for small threatened freshwater fish? Population risk assessment for southern pygmy perch,Nannoperca australis

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