油菜抗咪唑啉酮类除草剂基因标记的开发与应用

草害已成为严重制约我国油菜生产的重要因素。种植抗除草剂品种和采用化学除草是防控草害的经济有效途径。为了开展分子标记辅助选择(marker-assisted selection,MAS)育种,加速抗除草剂品种培育,本研究针对已发现的抗咪唑啉酮类除草剂油菜M9中BnALS1R基因编码区第1913位点的SNP变异,开发高通量、低成本的竞争性等位基因特异PCR (kompetitive allele specific PCR, KASP)标记。采用筛选出的KBA1R19681913B标记在2个F_2群体中进行KASP反应。结果表明,该标记能有效检测群体中存在的BnALS1R 3种基因型,其分离比均为1︰2︰1,遵循单基因遗传规律,且基因型与表型完全吻合。将该标记用于BnALS1R抗性纯合基因的回交转育,获得200多个抗咪唑啉酮油菜恢复系。该标记还可在油菜苗期鉴定抗性杂交种的纯度。KASP标记KBA1R19681913B的获得为油菜抗除草剂MAS育种以及抗性新种质的培育提供了技术支撑。     

油菜抗咪唑啉酮类除草剂基因BnALS1R等位基因特异PCR标记的开发与应用

油菜抗咪唑啉酮类除草剂基因BnALS1R是从抗性突变体M9中克隆获得,抗性基因BnALS1R与野生型基因BnALS1存在1处SNP,即乙酰乳酸合酶第638位丝氨酸残基被天冬酰胺酸替代。为获得油菜抗除草剂基因BnALS1R的分子标记,根据该处点突变,结合获得的BnALS3与BnALS1序列,开发30条等位基因特异PCR (allele-specific PCR,AS-PCR)引物,采用筛选出的3条AS-PCR引物在F₂、BC₁和BC₂群体中进行PCR扩增。结果表明,该标记有效检测出群体中存在的3种基因型,其分离比分别为1∶2∶1、1∶1、1∶1,均遵循单基因遗传规律。应用该标记对获得的抗性恢复系进行PCR扩增,结果发现所有抗性恢复系均能扩增出抗性基因BnALS1R目的条带,表明3条标记引物可应用于抗性基因的检测。AS-PCR标记的获得将促进以抗性基因进行油菜抗除草剂分子标记辅助选择育种。     

转EPSPS基因抗除草剂水稻恢复系的培育及育种评价

为了培育既抗除草剂、综合性状又优良的杂交水稻组合,将3份抗除草剂衍生恢复系（华84EP-1、2、3）与5份不育系（红香2A、Y58S、广占63-4S、华1015S、天源6S）配组,对亲本、杂交组合的除草剂抗性和10个主要农艺性状（单株产量、结实率、千粒重、生育期、株高、有效穗数、着力密度、穗总粒数、穗实粒数、穗长）的配合力效应进行了分析。结果表明,所选育的恢复系的除草剂抗性接近完全(>96%),利用苗期喷施农达可有效地提高杂交品种纯度;恢复系、不育系的一般配合力分别在5个性状（结实率、生育期等）、7个性状（结实率、千粒重等）上达到了显著差异;杂交组合的特殊配合力仅在生育期上达到了显著差异。杂交组合中比对照增产最高的分别是天源6S/华84EP-1、红香2A/华84EP-3和华1015S/华84EP-1。因此,利用抗除草剂恢复系配制水稻杂交组合不仅可以提高品种纯度,也可以培育出强优势组合。     

Development and application of allele-specific PCR assays for imazethapyr resistance in rice (Oryza sativa)

Outcrossing or cross hybridization is a potential concern in herbicide-resistant crop management strategies such as in the Clearfield™ rice system. Recent studies have shown that the mutated acetolactate synthase (ALS) gene that confers resistance to imazethapyr (Newpath) herbicide can be transferred from Clearfield rice cultivars via cross pollination under field conditions to weedy red rice. Resistance of commercial Clearfield rice cultivars to imazethapyr is due to the presence of two point mutations in the ALS gene that result in amino acid substitutions from serine to asparagine (S to D) and glycine to glutamic acid (G to E). We report here development of a DNA-based method that involves application of allele-specific PCR assays to distinguish herbicide-susceptible and resistant ALS alleles in either homozygous or heterozygous genotypes produced from natural outcrosses between Clearfield varieties CL121, CL141, CL161 and weedy red rice. PCR assays that can distinguish between the homozygous and heterozygous imazethapyr-resistant S₆₅₃D and G₆₅₄E SNP alleles of the rice ALS gene were developed and evaluated. A total of 483 individual red rice plants were successfully screened for the presence of S₆₅₃D SNP and another 145 F₂ individuals from natural red rice × CL121 hybridizations were screened for the presence of the G₆₅₄E SNP. The PCR-based assays produced during this study are simple, rapid, inexpensive, reproducible and require only standard PCR and electrophoretic instruments that can be applied toward outcrossing evaluation and effective weed management strategies for the Clearfield crop system.     

抗除草剂转基因水稻的研究进展及其安全性问题

近年来,抗除草剂转基因作物的研究取得了一些进展。本文简述了抗除草剂转基因作物的发展历史以及除草剂的作用机理,分别介绍了抗EPSPS抑制剂基因、抗ALS抑制剂基因、乙酰CoA转移酶基因、阿特拉津氯水解酶基因、细胞色素P450基因和原卟啉原氧化酶基因这6类抗除草剂基因的来源,抗性机理以及目前它们在转基因水稻上的应用。最后,对转基因水稻的食用安全性,转基因释放、飘移对生态的影响进行了探讨,并对转基因水稻的未来发展进行了展望。     

对除草剂敏感致死水稻bel基因的RAPD和SCAR分子标记

以8077s与抗感的籼稻品种丰35亲本及杂交后自交所得的F2群体为材料，采用群分法（Bulked Segregant Analysis, BSA），从210个10mer随机引物，找到两个水稻苯达松敏感池和抗感池之间表现多态性的特异引物——S20和S316，分别产生的标记片段为S20-440和S316-590。它们与bel基因的连锁距离分别为12.132 cM和7.97 cM。对RAPD扩增标记的片段进行克隆、测序，根据测序结果合成两对特异性的SCAR引物，包含原有的RAPD序列。SC01引物在敏感单株中扩增出一条423 bp带；SC02引物在敏感单株中扩增出一条606 bp带，它们的SCAR标记与bel基因的连锁距离为10.66 cM和7.04 cM。应用SCAR标记对水稻恢复系进行了辅助选育。     

水稻咪草烟抗性的遗传分析及其紧密连锁分子标记的筛选与应用

抗除草剂水稻的培育及推广能够提高除草效率, 取得巨大经济效益。本研究中金粳818为抗咪草烟资源, 以其与常规粳稻苏垦118杂交产生的F₂群体对抗性基因进行遗传分析与分子定位表明, 其抗性表型受1对显性核基因控制, 位于水稻第2染色体SSR分子标记RM7413和RM7426之间。对该区间候选基因预测和测序发现, 咪草烟靶基因-乙酰乳酸合酶基因(ALS)在重要功能位点发生1个碱基的突变(G变为A), 导致一个氨基酸由丝氨酸(S)突变为天冬酰胺(N), 初步确定ALS是抗性表型的重要候选基因。标记RM7413、RM7426与ALS的物理距离分别为165 kb、1612 kb。以金粳818与南粳9108为亲本, 检测标记RM7413在辅助育种实践中的应用潜力, 对杂交种及其自交后代进行连续表型及标记选择, F₇群体能够稳定遗传抗咪草烟性状, 表明RM7413在粳稻抗咪草烟辅助育种中具有巨大应用潜力。本研究结果为粳稻抗除草剂分子标记辅助改良奠定了基础。     

Out-crossing frequency and genetic analysis of hybrids between transgenic glufosinate herbicide-resistant rice and the weed, red rice

The potential of transferring herbicide resistance from transgenic rice (Oryza sativa L.) varieties to sexually compatible weeds is of paramount importance for development of effective weed control strategies. The objective of this research was to determine the genetic control and frequency of natural outcrossing between a transgenic, glufosinate-resistant rice line and a Louisiana biotype of red rice (Oryza sativa L.). Molecular and phenotypic data showed that outcrossing in field plots between a non-transgenic purple marker line and red rice did occur within one field season, but at a low rate of <1%. Similarly, molecular and phenotypic data demonstrated that glufosinate resistance was transferred from the transgenic line to the red rice biotype in the field within one year at a low frequency of 0.3%. Compared to parental lines, the transgenic-red rice hybrids were extremely late, tall, and never set seed during the normal field season. Genetic analyses in all F₂ populations showed glufosinate resistance behaved in a Mendelian fashion as a single, dominant gene. Presence of the bar gene for glufosinate resistance did not increase fitness or seed fecundity in hybrids or subsequent progeny. The genetic analyses and outcrossing results from this study suggest that an effective management program can be developed to prolong the usefulness of transgenic, glufosinate herbicide technology. This revised version was published online in July 2006 with corrections to the Cover Date.     

创建苗期和成株期广谱高抗白叶枯病的水稻种质资源(英文)

由白叶枯病菌引起的白叶枯病是一种世界范围的严重水稻病害。水稻抗病主效基因Xa3/Xa26是一个对白叶枯病具有剂量效应的抗性基因,即它对白叶枯病的抗性随着该基因的表达量的升高而增强。我们通过农杆菌介导的遗传转化方法,利用玉米泛素基因的启动子(PUbi)在水稻中组成型表达Xa3/Xa26基因。用于遗传转化的构件除了携带Xa3/Xa26基因外,还携带抗除草剂的草丁膦乙酰转移酶基因Bar作为遗传转化的筛选标记。我们获得的携带单拷贝PUbi:Xa3/Xa26的两个转基因家系无论在成株期还是在苗期对白叶枯病都具有高水平的广谱抗性,且转基因家系的主要农艺性状与对照相比无显著差别。因为转基因家系中Xa3/Xa26基因与Bar基因紧密连锁,这两个家系可以作为育种的种质资源用于培育既抗白叶枯病又抗除草剂的水稻品种。     

利用共转化方法创制携带Pi9抗稻瘟病基因的无选择标记转基因水稻

水稻稻瘟病是由子囊菌(Magnaporthe oryzae)引起的水稻灾害性病害。培育抗病品种是防治稻瘟病最经济有效的措施之一。水稻Pi9抗稻瘟病基因来源于小粒野生稻并已被克隆和应用于转基因育种。为了提高无选择标记转基因植株的选择效率,将绿色荧光蛋白(GFP)用作可视遗传标记,对双菌株共转化系统进行改良:目的基因载体携带Pi9抗稻瘟病基因;标记基因载体用潮霉素磷酸转移酶(HPT)作为植物转化选择标记,用GFP作为负选择标记,筛除标记基因分离植株。两种载体的农杆菌转化株混合,分别与水稻品种‘浙恢414’、‘浙粳22’、‘浙11B’、‘日本晴’、‘空育131’和‘粤泰B’的愈伤组织共培养,然后从5%~38.3%的起始愈伤组织筛选获得了转化愈伤组织(HPT+GFP+)。对T0植株进行Pi9基因PCR检测,11.8%~77.8%的T0植株为共转化植株(HPT+GFP+Pi9+)。对共转化植株T1代进行绿色荧光检测,筛选阴性植株(GFP-),再通过PCR筛选Pi9+植株。根据13个T1群体的研究结果,61%的共转化植株在T1代分离出无选择标记转基因植株(HPT-GFP-Pi9+)。转Pi9的无选择标记植株和后代株系对水稻稻瘟病呈抗病反应。因此,本研究通过GFP标记提高了双菌株共转化系统的选择效率,转Pi9的无选择标记水稻株系为水稻抗稻瘟病育种提供了有用的遗传资源。     

通过标记辅助回交育种改良优质水稻保持系金山B-1的稻瘟病抗性

金山B-1是本室育成的一个优质水稻雄性不育保持系。为了改良金山B-1的稻瘟病抗性,我们以水稻品系75-1-127为供体,通过标记辅助连续回交将显性广谱抗稻瘟病基因Pi-9导入到金山B-1中。已知Pi-2与Pi-9等位或紧密连锁。根据前人报道的Pi-2的双侧标记和公共数据库提供的水稻基因组序列信息,我们开发了一个在金山B-1和75-1-127之间表现多态的SSR标记SRM22。该标记与Pi-9基因紧密连锁,估计与Pi-9的物理距离为309Kb,换算成遗传距离为0.73cM。在各世代皆利用SRM22对目标基因进行跟踪,并结合形态性状进行背景选择。在BC3F1代,将中选单株与不育系金山A-1进行杂交并检查其后代的育性,以测验这些单株的不育保持性。在BC3F2代,根据抗病标记、不育保持性(根据BC3F1推断)及形态性状,选得5个符合需要的单株,由此得到5个抗病性得到改良的金山B-1近等基因系(BC3F2:3)。抗病鉴定表明,所有育成株系的抗性水平皆显著高于金山B-1,说明抗病基因确实已经导入金山B-1,利用SRM22标记进行选择是可靠的。但值得注意的是,所有育成株系的抗性水平都略低于75-1-127,说明Pi-9的抗病能力会受到遗传背景的影响。     

水稻抗咪唑啉酮类除草剂基因ALS功能标记的开发与应用

选育和利用抗除草剂水稻品种具有重要的生产实践意义。通过筛选水稻资源, 发现了抗除草剂材料金粳818, 其ALS基因编码区第1880位碱基存在一个由G到A的碱基变异, 导致丝氨酸突变为天冬酰胺, 从而具有除草剂抗性。本研究基于该位点的碱基变异, 设计了11条等位基因特异PCR (allelic-specific PCR, AS-PCR)引物, 经过优化筛选, 获得两个引物组合F1N (S1/S9)和F1M (S1/S10), 将该标记命名为AS-ALS。利用F₂群体及其亲本和杂交种, 结合AS-ALS标记检测和除草剂抗性分析, 结果表明感除草剂ALS-G等位基因型只能被F1N引物对有效扩增, 抗除草剂ALS-A等位基因型只能被F1M引物对有效扩增, 而杂合基因型能同时被两对引物F1N和F1M扩增, ALS-A纯合或杂合等位基因型都表现抗除草剂, ALS-G纯合基因型表现感除草剂。因此本研究开发的标记能有效区分除草剂抗性基因的3种基因型, 基因型与表型完全对应。该标记用于回交育种, 可以选择ALS-A杂合基因型单株, 剔除ALS-G纯合等位基因型, 在自交的F₂保留ALS-A纯合基因型单株, 连续自交, 能快速获得除草剂抗性稳定的水稻材料。该除草剂抗性基因的功能标记还可用于咪唑啉酮类除草剂抗性资源筛选。     

水稻抗稻瘟病基因Pi-ta的分子标记辅助选择

利用已建立的水稻抗稻瘟病基因Pi-ta显性分子标记对30个品系和157个来自不同国家的一些水稻品种进行分子鉴定,并采用稻瘟病菌菌株ZN57（IC-17）和ZN61（IB-49）人工接种试验进行致病性测试。结果表明,大部分品系和少数水稻品种含抗病基因Pi-ta,且对稻瘟病菌菌株ZN57和ZN61表现抗病反应。除此之外,利用两对显性分子标记YL1     

A first attempt to use a Fusarium subglutinans culture filtrate for the selection of pineapple cultivars resistant to fusariose disease

Pineapple, Ananas comosus L. Merr., cultivars differing in resistance to fusariose were examined for the phytotoxic effect of culture nitrate (CF), and fusaric acid (FA) isolated from Fusarium subglutinans (Wollew & Reinking) Nelson, Toussoun & Marasas. The possibility of using these substances on F₁ hybrids as selection agents for resistance was also evaluated. The phytotoxic effect of these substances was assessed in pineapple plantlets from tissue culture by placing them on wounded leaf segments. The resistance level of the F₁ hybrids and cultivars under natural conditions was measured in greenhouse field tests. The susceptible cultivars proved to be the most sensitive in each test, whereas resistant cultivars showed resistance to CF. FA affected all the cultivars independently of the degree of resistance of the cultivars The presence of other metabolites in CF was responsible for the screening effect between the varieties. Using CF as selection criteria allowed the selection of resistant plants with behaviour quite similar to plants where the fungus itself was used as the selection agent.     

利用三个分子标记鉴定大麦Yd2基因型及其在育种辅助选择中的应用

研究分子标记鉴定大麦抗黄矮病基因Yd2的有效性,可为Yd2基因在大麦抗病育种中的广泛应用提供快速有效的分子辅助选择工具。利用与Yd2基因紧密连锁的YLM、CAPS-Ylp和ASPCR-Ylp标记同时检测52份国内外大麦品种(系)与4份大麦F₁杂种的Yd2基因型,同时结合生物学抗性检测的表型分析其有效性。通过对Yd2基因型已知的20份大麦品种(系)及4个F₁杂种的Yd2基因型分析,表明YLM、CAPS-Ylp与ASPCR-Ylp标记可以有效判断大麦Yd2基因型。进一步用这3个标记检测32份Yd2基因型未知的大麦的基因型,鉴定出基因型为Yd2^-/Yd2^-的品种(系) 27份,基因型为Yd2⁺/Yd2⁺的品种(系) 5份。在回交育种的分子辅助选择实例中,从BC₂F₂世代中选出了16个基因型为Yd2⁺/Yd2⁺的单株。3个分子标记结合应用能够快速有效地鉴定大麦Yd2基因型,可用于Yd2基因回交育种中的大规模分子标记辅助选择。     

Dormancy, germination and ageing of Lolium multiflorum seeds following contrasting herbicide selection regimes

Lolium multiflorum Lam. is an annual weed that has developed resistance to diclofop-methyl herbicide. Knowledge of the relative fitness components of resistant and susceptible biotypes is important to predict and manage resistance. Here, we use different L. multiflorum selections obtained from a long-term experiment, in which the herbicide dose (0, 280, 560 and 1120 g a.i. ha⁻¹) and gene flow chances from Festuca rubra, naturally resistant to the herbicide, were managed. The relationship among herbicide selection history, the level of resistance achieved, and seed dormancy, germination rate and ageing is evaluated. The current resistance level of the different selections was not related to the herbicide dose of selection. The level of association between herbicide resistance and germination varied with the selection treatment and after-ripening time. There was a general positive relationship between hours to 50% germination and herbicide dose of selection, which was independent from the presence of F. rubra. Two L. multiflorum selections with highest resistance level diverged in their response to alternating temperature (i.e. seed dormancy level). While one of them displayed a high germination rate and high ageing rate, the second one displayed a low ageing rate during the evaluated period, similar to the control selection. Most arguments on how weeds evolve increasing fitness on agricultural fields are centered on dose responses and rarely on the effects of herbicide selection on other traits. Our results provide evidence that directional selection for other characteristics apart from resistance, may result from herbicide control causing adaptive phenological change.     

稻瘟病抗性基因Pita在中日韩粳稻中的分布

为了解2 350份来源中国、日本和韩国粳稻品种(系)稻瘟病抗性基因Pita的分布,利用2个KASP分子标记对该基因进行了检测,605份材料表现有利,1 732份不利,7份为杂合,6份不确定。在有利、不利和杂合三个群体中分别随机选取316份、101份和7份材料,对Pita基因功能片段进行了测序分析,结果显示有利群体中KASP检测结果准确率为95.89%,不利群体100%,2个KASP分子标记可以用来联合检测水稻种质资源的Pita抗性基因。根据KASP分子标记检测结果,在中国北方地方稻种中仅0.69%品种携带Pita抗性基因,在中国13个省区市育成品种(系)和日本韩国外来稻种中均有一定的分布,频率7.02%~55.81%,表明Pita基因在东亚地区范围内均得到了一定的应用,但各地区应用程度相差较大,其中中国吉林、辽宁、宁夏、浙江四省地区较高。通过415份材料Pita基因功能片段609个碱基序列的比较,仅发现3个变异位点(第2 388位,第2 752位,第2 766位)和4种基因单倍型,其中抗性基因仅一种单倍型(H1),感病基因有三种单倍型(H2, H3, H4),H2为优势单倍型(84.84%)。本研究结果为开发和利用中日韩地区稻种资源和品种布局提供了依据。     

Inheritance of angular leaf spot resistance in common bean line BAT 332 and identification of RAPD markers linked to the resistance gene

The existence of genetic variability for angular leaf spot (ALS) resistance in the common bean germplasm allows the development of breeding lines resistant to this disease. The BAT 332 line is an important resistance source to common bean ALS. In this work we determined the inheritance pattern and identified RAPD markers linked to a resistance gene present in BAT 332. Populations F₁, F₂,BCs and BCr derived from crosses between BAT 332 and cultivar Rudá were used. Rudá is a commercial cultivar with carioca type grains and susceptible to ALS. The resistance of BAT 332 to race 61.41 of the pathogen was confirmed. Segregation analysis of the plants indicated that a single dominant gene confers resistance. For identification of RAPD markers linked to the resistance gene, bulk segregant analysis (BSA) was used. Two RAPD markers,OPAA07₉₅₀ and OPAO12₉₅₀, linked in coupling phase at 5.10 and 5.83 cM of this gene, respectively, were identified. These molecular markers are important for common bean breeders and geneticists as source of genetic information and for marker assisted selection in breeding programs. This revised version was published online in July 2006 with corrections to the Cover Date.     

Development of cleaved amplified polymorphic sequence (CAPS) markers linked to a green rice leafhopper resistance gene, Grh3(t)

The chromosomal location of the resistance gene for green rice leafhopper (GRLH), an injurious insect for rice, has been determined and RFLP markers closely linked to this gene have been identified. The susceptible japonica rice variety ‘Nipponbare’ was crossed with a resistant japonica rice line ‘Aichi42’, in which green rice leaf hopper resistance had been introduced from an indica variety ‘Rantaj‐emas2’, and the 100 F₂ plants obtained were used for linkage analysis. The green rice leafhopper resistance gene, Grh3(t), was mapped between RFLP markers C288B and C133A on chromosome 6 and co‐segregated with C81. Of the RFLP markers tightly linked to Grh3(t), C81 was converted to a SCAR marker and C133A to a cleaved amplified polymorphic sequence marker that could distinguish the heterozygous genotype to establish an effective marker‐aided selection system for the GRLH resistance gene.     

Use of herbicide-resistant genic male sterility in hybrid rice seed production

One of the difficult problems in hybrid rice seed production is the low outcrossing frequency and requirement for much labor to produce hybrid seeds. In order to simplify the process of hybrid rice seed production, herbicide-resistant photoperiod sensitive genic male sterile (HRPGMS) rice was utilized in this study. The herbicide resistance gene bar was transferred into the photoperiod sensitive genic male sterile (PGMS) rice 920S by Agrobacterium-mediated transformation and the HRPGMS line YA3530ms with good agronomic characteristics was bred by applying conventional pedigree breeding technique. The seeds of HRPGMS and pollen parent were mixed with the ratio of 4:1 in weight, and were sowed in seedling box. The mixed seedlings of HRPGMS and pollen parent grown for 30 days were transplanted by the small transplanting machine in the field. The herbicide glufosinate ammonium was sprayed at 7 days after flowering to kill all the plants of pollen parent, whereas hybrid seeds were harvested from the survived HRPGMS parent at maturity. The outcrossing frequency of HRPGMS line from two combinations in 2002 and from five combinations in 2004 were compared with a control cultivated by the conventional 2-line system. As the result, the mean outcrossing frequency in HRPGMS of the treatments were 10.6–24.5% compared with 5.5% in PGMS of the control in 2002, and that were 24.7–32.0% compared with 7.5% in the control in 2004. Consequently, using HRPGMS in two-line system was proved to be a new method that would simplify the process of hybrid rice seed production and to increase outcrossing frequency without any artificial supplementary pollination processes.