Participatory crop improvement and formal release of <Emphasis Type="Italic">Jethobudho</Emphasis> rice landrace in Nepal

Jethobudho is an aromatic rice landrace of the Pokhara valley in middle hills of Nepal. Although local consumers are willing to pay a high price for its purchase, the landrace has a problem with quality variation. Decentralized participatory population improvement for specific market-identified traits was conducted on “Jethobudho” populations collected from farmers’ fields in seven geographic regions of the valley in Nepal. The preferred post harvest quality traits, field tolerance to blast and lodging, and superior post harvest quality traits of Jethobudho were established by a consumer market survey. These traits were used for screening the materials. 338 sub-populations of Jethobudho were evaluated for yield, disease, lodging resistance, and post harvest quality traits. Significant variation was found for culm strength, neck blast tolerance, awn characteristics, panicle length, number of grains per panicle, test grain weight and post harvest quality traits, whereas no significant variation was found in grain yield, plant height, tiller number, maturity period and leaf blast. Based on these identified traits and micro-milling evaluations, 183 populations were screened in on-farm and on-station nurseries, and in succeeding years populations were further screened by plant breeders and expert farmers in research trials, resulting in the selection of 46 populations for post harvest quality traits. Six accessions with similar agronomic traits, field tolerance to blast and lodging, and superior post harvest quality traits, were bulked and evaluated on-farm using participatory variety selection (PVS). The enhanced Jethobudho accessions were also evaluated for aroma using simple sequence repeat (SSR) and found to have unique aromatic genetic constitution. Community based seed production groups were formed, linked to the Nepal District Self Seed Sufficiency Programme (DISSPRO), and trained to produce basic seeds (truthfully labeled) of Jethobudho. The National Seed Board of Nepal released the enhanced landrace in the name of “Pokhareli Jethobudho” in 2006, as the first bulk variety of traditional high quality aromatic rice improved through participatory plant breeding to be formally released in Nepal for general cultivation under the national seed certification scheme. Landrace improvement is shown as an important option for supporting programmes for in situ conservation of landraces on-farm.     

CIMMYT's approach to breeding for wide adaptation

Summary The wheat area in developing countries, including China, is around 100 million ha. To address the needs of these very diverse wheat growing areas, CIMMYT has defined 12 wheat mega-environments (ME). A ME is defined as broad, not necessarily continuous often transcontinental area with similar biotic and abiotic stresses, cropping systems and consumer preferences. The factors describing each ME are presented.CIMMYT's breeding methodology is centered around the development of widely adapted germplasm with high and stable yield across a wide range of environments. Segregating populations are alternating screened in two diverse environments in Mexico. One key requirement is that all germplasm is tested under near optimum conditions for its yield potential. The second one is multi-locational testing of advanced lines at sites that represent a given ME (key locations) and careful screening of germplasm for tolerance to abiotic and biotic stresses specific to that environment. This methodology has permitted the pyramiding of a large number of multiple resistance genes for use against a wide spectrum of diseases and tolerance to abiotic stresses within each ME. In addition, the widespread testing of lines allows the identification of traits which are beneficial in several environments. Data from international nurseries are used to further delineate environments within an ME. This approach has proven to be successful since around 70% of the spring wheat area in developing countries (excluding China) is planted to varieties derived directly or indirectly from CIMMYT germplasm. The performance of the bread wheat cultivar Pastor in international trials is given as an example for a wide adaptation.     

Lessons from 10 years of stakeholder adoption of a soil bioassay for assessing the risk of spinach Fusarium wilt

Although the maritime Pacific Northwest (PNW) is the only region of the United States suitable climatically for spinach seed production, the acidic soils are highly conducive to spinach Fusarium wilt caused by Fusarium oxysporum f. sp. spinaciae. A soil bioassay developed to quantify the risk of spinach Fusarium wilt in fields has been offered to seed growers annually since 2010. Soil sampled from growers' fields each winter was planted with highly susceptible, moderately susceptible, and partially resistant spinach inbred lines, and the plants rated weekly to calculate a Fusarium wilt severity index (FWSI) and the area under the disease progress curve (AUDPC). Results for 147 soils tested from 2010 to 2013 have been published. This study examined results for an additional 248 soils tested from 2014 to 2019 with the bioassay modified to include an option of agricultural limestone amendment to the soils tested. FWSI and AUDPC were affected significantly (p < .001) by the main effects of soil and spinach inbred line, and the interaction of these factors. Correlation analyses showed a range in degree of association of FWSI and AUDPC with spinach seed crop rotation duration and soil properties, depending on the spinach inbred line (r = −.255 to –.267, n = 172 soils with characteristics suitable for correlation analyses). Stepwise regression models for 172 soils with relevant parameters for regression analyses identified spinach seed crop rotation interval, rate of agricultural limestone amendment, soil pH, and soil Fe, Mn, and Zn concentrations as most strongly associated with FWSI and AUDPC. However, the models accounted for ≤33.4% (R²) of the variability in Fusarium wilt risk. The soil bioassay remains a primary tool for spinach seed growers to select fields with low risk of Fusarium wilt.     

Agro-morphological variation in “Jhinuwa” rice landraces (Oryza sativa L.) of Nepal

Jhinuwa is an aromatic rice (Oryza sativa L.) landrace from the Pokhara Valley of Nepal. A total of 210 accessions comprising seven types of Jhinuwa rice landraces were randomly collected from the rice fields to evaluate inter- and intra-population variability based on agro-morphological traits. The experiment was conducted in factorial randomized complete block design with three replicates in 2005. The first six principal components (PCs) accounted for 76.6 % variation for agro-morphological traits. Major traits that accounted for the variation by six PCs includes days to heading, days to maturity, total grain panicle^?1, fertile grain panicle^?1, culm length, panicle length, milling recovery, head rice recovery, aroma, 1,000 grain weight, sterile grain panicle^?1, grain sterility %, and leaf characteristics. Both principal coordinate analysis and cluster analyses revealed four phenotypic groups, two of which represent Bayarni, Jhinuwa, and Biramphul while the other two account for Tunde and Pakho Tunde. Tunde, Pakho Tunde, Kalo Bayarni, and Seto Bayarni showed higher intra- as well as inter-population variation compared to other populations. The phenotypic and genotypic coefficients of variation, broad sense heritability (h ²B) and genetic advance (GA) as a percent of the mean assessed for 210 accessions revealed high h ²B and GA estimates for leaf width, leaf length breadth ratio, ligule length, sterile grain panicle^?1, grain sterility % and 1,000 grain weight. The current study demonstrates that improvement in Jhinuwa rice landrace is possible by selecting superior accessions from existing natural populations while selection should be focussed to market traits with higher h ²B and GA estimates.     

Prediction of soil depth using environmental variables in an anthropogenic landscape, a case study in the Western Ghats of Kerala, India

Soil (regolith) depth is a crucial input for modeling earth surface phenomena. However, most studies ignore its spatial variability. Techniques that map the spatial variability of soil depth are of three types: (1) physically-based; (2) empirico-statistical from environmental correlates; and (3) interpolation from point observations. In an anthropogenic landscape, soil depth does not depend primarily on natural processes, making it difficult to apply a physically-based approach. The present study compares empirico-statistical methods with geostatistical methods for predicting soil depth in such a landscape: Aruvikkal catchment (9.5 km²) in the Western Ghats of Kerala, India. Regression kriging applied on blocks of 20 m by 20 m using the environmental covariates elevation, slope, aspect, curvature, wetness index, land use and distance from streams, proved to be the best predictor of soil depth. This model explains 52% of the variability of soil depth in the catchment; with a prediction variance of 0.05 to 0.19. A Gaussian simulation was attempted for a more realistic visualization of the depth, as opposed to the smooth kriging prediction. The most important explanatory variable of soil depth in this landscape is land use, as expected from the strong human intervention.     

Factors influencing in vivo and in vitro micrografting of sandalwood (Santalum album L.): an endangered tree species

In vivo micrografting of Santalum album was achieved (50%) by grafting 4- to 5-cm-long scions, collected from a candidate plus tree (CPT) of 50–60 years of age, onto 90-day-old nursery-grown rootstock. Scion size, rootstock age, and scion collection season were found to influence graft success. Grafted plants were incubated under greenhouse conditions for 6–8 weeks during the graft union process. In vitro micrografts were achieved by placing 1- to 2-cm-long scions derived from nodal shoot segments (collected from CPT) onto the hypocotyl of 45-day-old in vitro rootstocks. Use of in vitro grown shoots as a source of scion gave better graft success (60%) than scions collected directly from field-grown trees. In vitro grafting was also influenced by scion size and rootstock age. Under favorable conditions, scions and hypocotyls unite to form complete plants that produced two to four leaves after 6–8 weeks. This is the first report on in vivo and in vitro micrografting of S. album having potential for production of disease-free clonal plants for conservation and improvement targets.     

Molecular and phenotypic diversity of ICARDA spring barley (<Emphasis Type="Italic">Hordeum vulgare</Emphasis> L.) collection

Plant breeders are interested in using diverse genotypes in hybridization that can segregate for traits of importance with possibility of selection and genetic gain. Information on molecular and agro-morphological diversity helps the breeders reduce the effort for parental selection and helps the advancement of generations. A phenotypic and molecular diversity study, using 24 traits (agronomic and disease) and 6519 SNPs in a diverse collection of 336 spring barley genotypes, was carried out at Marchouch and Jemma Shiam research stations in Morocco. Based on structure and multivariate analyses, strong differentiation between the two- and six-row types were observed. The linkage disequilibrium (LD) decay of the current collection (for the combined population) was up to 3.58 cM (r ² = 0.15) while LD decay were estimated 3.91 and 2.36 cM for two- and six-row barley, respectively. PCA of agro-morphological traits revealed grain per spike, net form of net blotch (NFNB), spot form of net blotch (SFNB), and 1000 kernel weight were the most discriminatory traits in the current collection. Association mapping in the two independent populations will be ideal for identification of markers, and QTL related to traits. The generated information on relatedness between individuals will help identify diverse genotypes for breeding programs.     

Highly client-oriented breeding,using local preferences and selection,produces widely adapted rice varieties

When explicit measures are taken to account for the needs of clients (farmers and consumers) it results in highly client-oriented breeding. This involves the participation of farmers to specify the design of desirable varieties and, once they are produced, their testing without delay with the target clients in the target environments. The term highly client-oriented breeding (COB) explains the purpose of farmer involvement – the deliberate achievement of a high degree of client orientation – rather than simply explaining the process of farmers participating in plant breeding (participatory plant breeding). Client-oriented breeding is sometimes based on the preferences of relatively few farmers in a small area, so a possible drawback is that it will produce varieties that are too locally adapted. We describe the testing of varieties in the High Barind Tract (HBT) of Bangladesh from a COB programme carried out in Chitwan district, Nepal. The two best lines, Judi 582 and Judi 567, yielded 19–50% more during the T. Aman season and 106% more during the Aus season than check varieties in the HBT. Research to determine farmers’ preferences and adoption consistently showed these varieties were preferred over all available alternatives. The new varieties were broadly adapted as they were superior in all the three rice-growing seasons over varying levels of inputs. This broad adaptation could be explained by the breeding method: the generations were advanced in two contrasting seasons and each generation was grown on a different farmer's field under different management and planting dates. Because the segregating generations were grown under moderate and fluctuating levels of nitrogen, it is to be expected that genotypes with good nitrogen use efficiency will be selected that can also respond to added nitrogen. Overall, the cost-effectiveness of COB was high as it produced widely adapted genotypes from a small breeding programme, and knowledge of farmers’ preferences increased the efficiency of targeting new germplasm.