Performance of Bangladesh indigenous rice in a weed infested field and separation of allelopathy from resource competition

This study aimed to identify the potential allelopathic indigenous rice (Oryza sativa L. ssp. indica) varieties from Bangladesh using a performance study in a weed‐infested field and to assess the extent of allelopathic interference relative to resource competition in a glasshouse experiment. Six varieties – namely, “Boterswar,” “Goria,” “Biron” and “Kartiksail” as the most allelopathic, “Hashikolmi” as weakly allelopathic and “Holoi” as nonallelopathic – were raised following a nonweed control method. The infestation levels of weed species were calculated using Simpson's Diversity Index (SDI), which ranged from 0.2 to 0.56. However, a significant correlation coefficient (0.87, P < 0.001) was obtained from these field data compared with the root inhibition percentage from the laboratory bioassay, and the “Boterswar” variety was the most allelopathic. The interactions between the allelopathic variety “Boterswar,” weakly allelopathic variety “Hashikolmi” and Echinochloa oryzicola via a target (rice)‐adjacent (E. oryzicola) cogrowth culture were determined in a hydroponic arrangement. The relative competitive intensity (RCI) and the relative neighbor effect (RNE) values showed that the crop–weed interaction was facilitation for “Boterswar” and competition for “Hashikolmi” and E. oryzicola in rice/E. oryzicola cogrowth cultures. The allelopathic effects of “Boterswar” were much higher than the resource competition in rice/E. oryzicola cogrowth cultures. The converse was observed for “Hashikolmi.” Moreover, the mineral content of E. oryzicola was severely affected by “Boterswar”/E. oryzicola cogrowth cultures’ exudate solution. Therefore, the allelopathic potential of “Boterswar” variety might be useful for developing the weed‐suppressing capacity of rice, which will likely have a significant influence on paddy weed control.     

Effects of Soil Type and Cover Condition on Cryptosporidium parvum Transport in Overland Flow

Overland transport kinetics of pathogens is controlled, in large part, by soil and vegetation. With an increasing number of concentrated animal operations, there is becoming a greater need to dispose of a vast amount of manure in a single, localized area. Animal manure contains a substantial amount of microbial pathogens, including Cryptosporidium parvum that may pose a threat of contamination of water resources. This study examines the kinetics of C. parvum in overland transport and critical factors involved in the design of best management practices, especially vegetative filter strips, to prevent the transport of harmful pathogens to water bodies. Three soil types were tested (Catlin silt-loam, Alvin fine sandy-loam, Darwin silty-clay), spanning the entire spectrum of typical Illinois soils. A 20-min rainfall event was produced using a small-scale (1.07 m?×?0.66 m) laboratory rainfall simulator over a soil box measuring 0.67 m?×?0.33 m. Each soil type was tested for pathogen transport kinetics with bare surface conditions as well as with smooth brome and fescue vegetative covers. Surface runoff, soil cores, and near-surface runoff were each analyzed for infective C. parvum oocysts using cell culture infectivity assays. Results showed that vegetation greatly reduced the recovery of infective oocysts, in addition to delaying the time to the peak recovery. However, there was no clear evidence of any one vegetation type being advantageous over another. The bare soil experiments resulted in a higher recovery of C. parvum oocysts from the Darwin soil compared to other two soils. Analyses of soil cores show a slightly higher recovery of oocysts in the Catlin soil compared to Alvin or Darwin soils.     

Identification of drought responsive QTLs during vegetative growth stage of rice using a saturated GBS-based SNP linkage map

Drought is a major abiotic constraint for rice production worldwide. The quantitative trait loci (QTLs) for drought tolerance traits identified in earlier studies have large confidence intervals due to low density linkage maps. Further, these studies largely focused on the above ground traits. Therefore, this study aims to identify QTLs for root and shoot traits at the vegetative growth stage using a genotyping by sequencing (GBS) based saturated SNP linkage map. A recombinant inbred line (RIL) population from a cross between Cocodrie and N-22 was evaluated for eight morphological traits under drought stress. Drought was imposed to plants grown in 75 cm long plastic pots at the vegetative growth stage. Using a saturated SNP linkage map, 14 additive QTLs were identified for root length, shoot length, fresh root mass, fresh shoot mass, number of tillers, dry root mass, dry shoot mass, and root-shoot ratio. Majority of the drought responsive QTLs were located on chromosome 1. The expression of QTLs varied under stress and irrigated condition. Shoot length QTLs qSL1.38 and qSL1.11 were congruent to dry shoot mass QTL qDSM1.38 and dry root mass QTL qDRM1.11, respectively. Analysis of genes present within QTL confidence intervals revealed many potential candidate genes such as laccase, Calvin cycle protein, serine threonine protein kinase, heat shock protein, and WRKY protein. Another important gene, Brevis radix, present in the root length QTL region, was known to modulate root growth through cell proliferation and elongation. The candidate genes and the QTL information will be helpful for marker-assisted pyramiding to improve drought tolerance in rice.     

Genetics and molecular mapping of gynoecious (F) locus in cucumber (Cucumis sativus L.)

Gynoecious is an important economic trait of cucumber for determinant of earliness and yield, yet genetic mechanism is not well understood for this trait. The experiment was conducted using F₂ mapping population by crossing of PPC-2, a gynoecious and parthenocarpic line with Pusa Uday (monoecious and non-parthenocarpic cultivar). Out of 179 SSR markers screened, 39 markers differentiated the gynoecious and monoecious parents. However, only 17 markers were segregating with F₂ mapping population, those were used for genotyping and linkage map analysis and these markers were placed along with F locus on chromosome 6 covering a total distance of 100.4cM. The SSR markers, SSR13251 and UW020605 were found to be closely linked to gynoecious (F) locus at 1.0 and 4.5 cM, respectively. The segregation of F₂ population of PPC-2 × Pusa Uday and GPC-1 × Punjab Naveen and test crosses for sex type herein suggested that single dominant gene controlled the gynoecious sex expression in cucumber particularly in gynoecious genotypes PPC-2 and GPC-1. Therefore, the monogenic dominant nature of gynoecious sex identified in the present experiment and SSR markers closely linked to the F locus will be useful in marker-assisted backcross breeding for transfering gynoecious trait into horticulturally desirable varieties.     

Association mapping,trait variation,interaction and population structure analysis in cucumber (Cucumis sativus L.)

Genetic Resources and Crop Evolution - In several regions of the world, low productivity in this crop is attributed to several factors including poor understanding of the genomic complexity of...     

Preferential sorption of phenolic phytotoxins to soil: implications for altering the availability of allelochemicals

Allelopathy, secondary metabolite-mediated plant-to-plant interaction, is gaining application in current agricultural science as well as in invasion ecology. However, the role of sorption to soil in modifying the bioavailability of components in complex allelochemical mixtures is still obscure. Hence, the role of preferential sorption to soil in altering the chemical composition of plant exudates was studied in a silt loam soil using representative mixtures of plant phenolic acids, namely, hydroxybenzoic acid, vanillic acid, coumaric acid, and ferulic acid. The experiment was conducted using a batch equilibration technique, and data were fitted to a Freundlich isotherm. The concentration-dependent sorption coefficient (K(d)) at 10 microg mL(-)(1) was used to assess the sorption affinity of phenolic acids across different systems. Along with solid phase dissolution, all of the phenolic acids exhibited strong site-specific sorption, as evident from their nonlinear isotherms. Removal of organic matter substantially decreased the sorption affinity of all phenolic acids. Direct competition for sorption sites was observed even at low concentrations of phenolic acids. The K(d) of hydroxybenzoic acid was decreased more than 90% in the presence of coumaric acid. About 95% of sorbed vanillic acid was displaced into the soil solution in the presence of ferulic acid. Hydroxybenzoic acid did not affect the sorption affinity of other phenolic acids significantly, whereas ferulic acid showed low displacement by other phenolic acids. The displacement pattern indicated directional sorption of phenolic acids with -OH and -COOH groups. Soil organic matter was associated with preferential sorption. This is the first study to elucidate competitive sorption characteristics of plant secondary metabolites in soil matrix. The results demonstrate that preferential sorption to soil can alter the availability of plant exudates in mixtures and thus may mediate their phytotoxic effects.     

Direct shoot organogenesis from rhizomes of medicinal zingiber <Emphasis Type="Italic">Alpinia calcarata</Emphasis> Rosc. and evaluation of genetic stability by RAPD and ISSR markers

A simple and efficient protocol for direct in vitro shoot multiplication and plant regeneration was established for an important aromatic medicinal plant, Alpinia calcarata. Preinduction of rhizome segments in medium containing 8.8 μM 6-benzylamino purine (BAP) rescued the buds from dormancy in 60% of the cultures. An average of 6.2 shoots were produced from rhizomatous bud explants on Murashige and Skoog (MS) medium supplemented with 5 μM BAP, 10 μM kinetin, and 2.5 μM α-Naphthalene acetic acid (NAA). The mother cultures retained their morphogenetic potential upto four subcultures and a maximum of 1.77-fold increase in shoot multiplication was recorded after the 3^rd subculture. Rooting was simultaneously induced during subculture on shoot multiplication medium eliminating an additional step for rooting induction. Rooted plantlets were successfully acclimatized in pots in the greenhouse and subsequently established in the experimental garden without any visible symptoms of wilting and necrosis. The genetic fidelity of regenerated plants was evaluated by adapting to two PCR-based DNA marker techniques, Random Amplified Polymorphic DNA (RAPD) and Inter Simple Sequence Repeats (ISSR) which detected no variability in the in vitro multiplied plantlets of A. calcarata. This efficient method of clonal multiplication may be useful for commercial scale multiplication, and in situ and ex situ conservation of elite germplasm of A. calcarata.     

Evapotranspiration and regional probabilities of soil moisture stress in rainfed crops, southern India

The long-term probability of soil moisture stress in rainfed crops was mapped at 0.5° resolution over the Krishna River basin in southern India (258,948 km²). Measurements of actual evapotranspiration (E_a) from 90 lysimeter experiments at four locations in the basin were used to calibrate a non-linear regression model that predicted the combined crop coefficient (K_cK_s) as a function of the ratio of seasonal precipitation (P) to potential evapotranspiration (E_p). Crops included sorghum, pulses (mung bean, chickpea, soybean, pigeonpea) and oilseeds (safflower and sunflower). E_p was calculated with the Penman–Monteith equation using net radiation derived from two methods: (1) a surface radiation budget calculated from satellite imagery (E_pSRB) and (2) empirical equations that use data from meteorological stations (E_pGBE). The model of K_s as a function P/E_p was combined with a gridded time series of precipitation (0.5° resolution, 1901–2000) and maps of E_pSRB to define the probability distributions of P, P/E_p and K_s for sorghum at each 0.5° cell over the basin. Sorghum, a C4 crop, had higher E_a and K_s values than the C3 plants (oilseeds, pulses) when precipitation was low (P < 1 mm d⁻¹) but lower maximum E_a rates (3.3–4.5 mm d⁻¹) compared with C3 crops (oilseeds and pulses, 4.3–4.9 mm d⁻¹). The crop coefficient under adequate soil moisture (K_c) was higher than the FAO-56 crop coefficients by up to 56% for oilseeds and pulses. The seasonal soil moisture coefficient (K_s) for sorghum ranged from 1.0 under high rainfall (July–October) to 0.45 in dry seasons (November–March), showing strong soil moisture controls on E_a. E_pSRB calculated at the lysimeter stations was 4–20% lower than E_pGBE, with the largest difference in the dry season. K_c derived from E_pSRB was only slightly (2–4%) higher than K_c derived from E_pSRB, because the maximum E_a occurred during the monsoon when the differences between E_pSRB and E_pGBE were small. Approximately 20% of the basin area was expected to experience mild or greater soil moisture stress (K_s < 0.80) during the monsoon cropping season 1 year in every 2 years, while 70% of the basin experienced mild or greater stress 1 year in 10. The maps of soil moisture stress provide the basis for estimating the probability of drought and the benefits of supplemental irrigation.     

Selection of genetically diverse sea oats lines with improved performance for coastal restoration in the northern Gulf of Mexico

Numerous sea oats (Uniola paniculata L.) plants are transplanted to Northern Gulf of Mexico beaches each year to reduce coastal erosion. To adapt to environmental changes and effectively reduce coastal erosion, genetically diverse sea oats plants with demonstrated plant performance must be used. The objectives of this study were to: (i) identify improved sea oats lines; and (ii) determine the genetic diversity of improved sea oats lines. From 2003 to 2005, 2,000 sea oats lines were evaluated in unreplicated field trials at natural beach sites. In 2005, 75 sea oats lines were selected based upon phenotypic performance. The 75 selected lines and 3 plants of ‘Caminada’, the only commercially available sea oats line, were evaluated in replicated field trials in 2008 and 2010. In 2008, UP01LA-15 K-HB-3092, UP01LA-16S-GP-3138, UP01LA-31-GP-3103, UP01LA-33-GP-1303, and UP01NC-04-HB-3374 had higher (p < 0.05) stem densities than Caminada. In 2010, variation was not detected for any trait measured; lack of significant differences was most likely due to plant stress caused by storm surge one week after transplant. Amplified Fragment Length Polymorphism detected 534 loci for the 75 selected lines and 3 Caminada plants. One hundred eighty one loci were polymorphic; the average polymorphism rate was 34% (range = 25–43%). Polymorphic information content values ranged from 0.15 to 0.41 and averaged 0.29 while Jaccard similarity coefficients ranged from 0.8243 to 0.9794. These findings demonstrate the application of plant breeding techniques to develop genetically different sea oats lines with improved performance for coastal restoration projects in the northern Gulf of Mexico.