Comparative genome analysis reveals a distinct influence of nucleotide composition on virus–host species‐specific interaction of prawn‐infecting nodavirus

Discovery of species‐specific interaction between the host and virus has drawn the interest of many researchers to study the evolution of the newly emerged virus. Comparative genome analysis provides insights of the virus functional genome evolution and the underlying mechanisms of virus–host interactions. The analysis of nucleotide composition signified the evolution of nodavirus towards host specialization in a host‐specific mutation manner. GC‐rich genome of betanodavirus was significantly deficient in UpA and UpU dinucleotides composition, whilst the AU‐rich genome of gammanodavirus was deficient in CpG dinucleotide. The capsid of MrNV and PvNV of gammanodavirus retains the highest abundance of adenine and uracil at the second codon position, respectively, which were found to be very distinctive from the other genera. ENC‐GC3 plot inferred the influence of natural selection and mutational pressure in shaping the evolution of MrNV RdRp and capsid, respectively. Furthermore, CAI/eCAI analysis predicts a comparable adaptability of MrNV in squid, Sepia officinalis than its natural host, Macrobrachium rosenbergii. Thus, further study is warranted to investigate the capacity of MrNV replication in S. officinalis owing to its high codon adaptation index.     

Visible-Light-Driven Photocatalytic N-Doped TiO<Subscript>2</Subscript> for Degradation of Bisphenol A (BPA) and Reactive Black 5 (RB5) Dye

Bisphenol A (BPA) and reactive black 5 (RB5) dye are among the most persistent and non-biodegradable contaminants in water which require an urgent need for the development of effective removal method. The ubiquitous existence of both contaminants could interfere with the human health and aquatic environmental balance. Photocatalytic process as one of advanced oxidation processes (AOPs) has shown high performance for degradation of organic compounds to the harmless materials under sensible condition. Therefore, this study aims to develop a visible-light-driven photocatalyst that can efficiently degrade BPA and RB5 present in household water. N-doped TiO₂ were successfully synthesized via simple and direct sol–gel method. The prepared TiO₂ nanoparticles were characterized by field emission scanning microscope (FE-SEM), X-ray diffraction (XRD), Fourier transform infrared (FTIR), and Brunauere Emmette Teller (BET) analysis. The incorporation of nitrogen in TiO₂ lattice exhibited excellent optical responses to visible region as revealed by UV–Vis–NIR spectroscopy absorption capability at 400–600 nm. The photocatalytic activity of the N-doped TiO₂ nanoparticles was measured by photocatalytic degradation of BPA and RB5 in an aqueous solution under visible-light irradiations. Degradation of BPA and RB5 was 91.3% and 89.1%, respectively after 360 min illumination. The degradation of BPA and RB5 by N-doped TiO₂ was increased up to 89.8% and 88.4%, respectively under visible-light irradiation as compared to commercial TiO₂ P25. This finding clearly shows that N-doped TiO₂ exhibits excellent photocatalytic degradation of BPA and RB5 under visible irradiation, hence have a promising potential in removing various recalcitrant contaminants for water treatment to fulfill the public need to consume clean water.

Open image in new window

Graphical Abstract ?

     

Proliferation and transmission patterns of <Emphasis Type="Italic">Pasteurella multocida</Emphasis> B:2 in goats

This report describes the proliferation and transmission patterns of Pasteurella multocida B:2 among stressful goats, created through dexamethasone injections. Thirty seven clinically healthy adult goats were divided into three groups consisted of 15 goats in group A, 11 goats in group B and the remaining 11 in group C. At the start of the study, all goats of group A were exposed intranasally to 1.97 × 10¹⁰ CFU/ml of live P. multocida B:2. Dexamethasone was immediately administered intramuscularly for 3 consecutive days at a dosage rate of 1 mg/kg. The exposed goats were observed for signs of HS for a period of 1 month. At the end of the 1-month period, 11 goats from group B were introduced into and commingled with the surviving goats of group A before all goats from both groups were immediately injected intramuscularly with dexamethasone for 3 consecutive days. The treatment with dexamethasone was then carried out at monthly interval throughout the 3-month study period. Goats of group C were kept separately as negative control. Three surviving goats from each group were killed at 2-week interval for a complete post-mortem examination. Two (13%) goats of group A were killed within 24 hours after intranasal exposure to P. multocida B:2 while another two (13%) goats from the same group were killed on day 40, approximately 10 days after the second dexamethasone injection. All four goats showed signs and lesions typical of haemorrhagic septicaemia. Bacteraemia was detected in 3 goats of group A that were having rectal temperature higher than 41°C. The P. multocida B:2 isolation pattern was closely associated with dexamethasone injections when significantly (p < 0.05) higher rate of isolations from both groups were observed after each dexamethasone injection. Transmission of P. multocida B:2 from goats of group A to group B was successful when P. multocida B:2 was isolated from goats of group B for a period of 28 days. There was a strong correlation between dexamethasone injections, rate of bacterial isolation and serum cortisol level. The IgG level showed an increasing trend 2 weeks after exposure to P. multocida B:2 and remained high throughout the study period.     

Effectiveness of single and combined use of selected dietary probiotic and prebiotics on growth and intestinal conditions of striped catfish (Pangasianodon hypophthalmus,Sauvage, 1978) juvenile

Aquaculture International - Single or combined effect of yeast, galactooligosaccharide (GOS), mannanoligosaccharide (MOS), and β-glucan was evaluated on the growth performance, nutrient...     

Genetic variation of Haemonchus contortus (Trichostrongylidae) in sheep and goats from Malaysia and Yemen

The large stomach worm, Haemonchus contortus, commonly known as "the barber's pole worm", is a blood-sucking nematode found in the abomasa of sheep and goats. This work is the first documentation on the ND4 sequences of H. contortus from sheep and goats in Malaysia and Yemen and the results provide a preliminary insight on the genetic differences of H. contortus found in the two countries. In general, this study showed a high degree of diversity and low population structure of this species within the same country in comparison with higher genetic structuring at a wider geographical scale. The results also showed that the majority of genetic variance was within H. contortus populations. The Malaysian sheep and goat populations investigated appeared to share the same isolate of H. contortus while different isolates may be found in Yemen which must be taken into account in the design of an effective control strategy. Analysis of the internal transcribed spacer-2 (ITS-2) confirmed that all samples investigated in this study belonged to H. contortus. However presence of other Haemonchus species parasitizing these two hosts can only be confirmed by further detailed studies.