Comparison of the antioxidant activities of 22 commonly used culinary herbs and spices on the lipid oxidation of pork meat

The antioxidant activities of 22 selected culinary herbs and spices (i.e. ginger, cinnamon, clove, bay, sage, rosemary, thyme, savory, oregano, sweet basil, parsley, coriander, tarragon, sansho, allspice, cumin, black and white peppercorns, nutmeg, caraway, dill and fennel) when they were added to pork homogenate were measured and expressed as a thiobarbituric acid (TBA) value. The addition of liquid extracts of all the herbs and spices significantly suppressed lipid oxidation of the pork, especially the extracts of sansho, sage and ginger, which showed the strongest inhibition of lipid oxidation.     

Practical capability of a DNA pool‐based genome‐wide association study using BovineSNP50 array in a cattle population

Genome‐wide association mapping for complex traits in cattle populations is a powerful, but expensive, selection tool. The DNA pooling technique can potentially reduce the cost of genome‐wide association studies. However, in DNA pooling design, the additional variance generated by pooling‐specific errors must be taken into account. Therefore, this study aimed to investigate factors such as: (i) the accuracy of allele frequency estimation; (ii) the magnitude of errors in pooling construction and in the array; and (iii) the effect of the number of replicate arrays on P‐values estimated by a genome‐wide association study. Results showed that the Illumina correction method is the most effective method to correct the allele frequency estimation; pooling errors, especially array variance, should be taken into account in DNA pooling design; and the risk of a type I error can be reduced by using at least two replicate arrays. These results indicate the practical capability and cost‐effectiveness of pool‐based genome‐wide association studies using the BovineSNP50 array in a cattle population.     

Effects of Shifting Cultivation on Soil Ecosystems in Sarawak, Malaysia. III. Results of Burning Practice and Changes in Soil Organic Matter at Niah and Bakam Experimental Sites

The effects of burning on the levels of soil organic matter, soil nitrogen, and soil microbial biomass were studied by carrying out experimental shifting cultivation at two sites, Niah and Bakam in Sarawak, Malaysia. Vegetation biomass was burned in plots (10 × 10 m²) at the rates of 0 (control), 100, 200, and 300 Mg ha⁻¹ at the Niah site and 0, 20, and 100 Mg ha⁻¹ at the Bakam site. At the Niah site, the levels of total C and N of the soils did not change throughout the experiment in spite of enhanced soil respiration until 2 months after burning. Although burning induced an increase in the amount of NH₄-N of the soils, the readily available pool of N (the sum of the NH₄-N, NO₃-N, microbial biomass N, and extractable organic N pools) in the burned plots was depleted appreciably at the end of rice cultivation. The effects of burning on these properties tended to be substantial with increasing amounts of the vegetation biomass burned. On the other hand, the levels of total C and N and the readily available N pool at the Bakam site were low before burning compared with those at the Niah site, and the burning treatments did not affect them appreciably. While the rice yield at the Niah site reached the average value obtained in traditional shifting cultivation in Sarawak, that at the Bakam site was much lower. It was suggested that the flush of NH₄-N induced by burning was one of the major factors for rice growth.     

Impact of direct dry seeding on rainfed paddy vegetation in north-east Thailand

In north-east Thailand where rainfed paddy cultivation is commonplace, direct dry seeding is replacing transplanting to increase the frequency of successful plantings and to save labor. The present study shows the impact of this change on paddy vegetation from agricultural and ecological viewpoints. One hundred and seventy-nine paddy fields from a wide range of climatic, topography, soil and hydrological conditions were used in this study. Authors visited these fields every 3 weeks during the rainy seasons of 1996–1998 to collect data about water conditions, rice growth, progress of cultivation, paddy vegetation and roughness (unevenness) of the soil surface. Analysis of this data revealed that direct dry seeded fields are resource-poor and have a wider range of water conditions within a field than transplanted fields due to a rougher soil surface. This results in lower productivity of total vegetation for rice growing in direct dry seeded fields. However, weed productivity was not significantly different between the direct dry seeding and transplanted fields. Direct dry seeded fields have more species-rich vegetation and greater diversity than the transplanted fields. Previous planting methods for particular fields did not influence productivity and diversity of paddy vegetation. It is concluded that the use of direct dry seeding increases biomass production of rice and the diversity of the paddy vegetation. The present results also suggest that an analytical framework be used to integrate agricultural and ecological studies of paddy vegetation in order to harmonize agricultural productivity with biological diversity.     

Strain differences in morphometrical characteristics of rat kidneys

To clarify the strain differences in the morphology of the rat kidneys, we investigated the morphometrical characteristics of the kidneys of Slc:Wistar, Slc:SD, and F344/NSlc rats. The diameter of the renal corpuscles in female F344/N rats is smaller than that in female Wistar rats. Although sex differences (males>females) were shown in SD and F344/N rats, no effects of castration were detected in any of the groups. Strain-dependent differences in the percentage of renal corpuscles with a cuboidal parietal layer were found in both male and female groups. The highest percentage of them was noted in male Wistar rats. Effects of castration were observed in female Wistar and male F344/N rats, and the values after castration were significantly higher than those in the intact animals. As for the number of proximal convoluted tubular nuclei, no strain differences were detected in either the male or female groups. Although a sex difference was found in SD rats (female>male), no effects of castration were detected in any of the groups. In female F344/N rats, numerous numbers of PAS-positive granules, which were observed in the proximal convoluted and straight tubular epithelia, were noted. Orchiectomy induced an increase of these granules in male SD and F344/N rats, but ovariectomy showed no effects on them in any strains. This is the first study to clarify the strain differences in the morphological characteristics of the kidneys in ordinary rat strains.     

The g.841G>C SNP of FASN gene is associated with fatty acid composition in beef cattle

The objective of the current study is to evaluate the association between fatty acid composition and fatty acid synthase gene polymorphisms as responsible mutations. For this purpose, we selected seven previously reported single nucleotide polymorphisms (SNPs) in FASN gene, including one within promoter region (g.841G>C) and six non‐synonymous SNPs (g.8805C>T, g.13126C>T, g.15532A>C, g.16024A>G, g.16039C>T, g.17924A>G), and genotyped them in Japanese Black cattle. Genotyping results revealed that g.8805 C>T and g.17924 A>G were monomorphic loci. Genome‐wide association analysis including the other five SNPs revealed that only g.841G>C showed significant associations with the percentages of C14:0, C14:1, C16:1 and C18:1 at 5% genome‐wide significance level. In order to further evaluate the effect, we genotyped g.841G>C using additional three populations, including two Japanese Black populations and a Holstein cattle population. g.16024A>G was also genotyped and included in the analysis because it has been reported to be associated with fatty acid composition in Japanese Black cattle. In the result of analysis of variance, g.841G>C showed stronger effects on fatty acid percentage than those of g.16024A>G in all populations. These results suggested that g.841G>C would be a responsible mutation for fatty acid composition and contribute to production of high‐grade beef as a selection marker in beef cattle.     

浙江粳稻与日本粳稻品种间遗传差异的SSR分析

从424对分布于水稻12条染色体的SSR引物中筛选出44对用于12份日本粳稻和12份浙江粳稻的多态分析,44对引物多态性筛选结果表明,19对引物在12份日本粳稻间有多态,15对引物在浙江粳稻间有多态,44对引物对两个地区品种的多态检出率分别为43.2和34.1.品种间引物多态性分析结果表明,日本粳稻和浙江粳稻的品种(系)内平均多态检出率分别为50.5和38.7.UPGMA聚类分析表明,日本粳稻间相似系数在0.5以上,且分为两大类;而浙江粳稻相似系数也在0.5以上且为同一大类.说明浙江粳稻间的遗传差异与日本粳稻间的差异相仿或低于日本粳稻.