A new type of lordosis and vertebral body compression in Gilthead sea bream,Sparus aurata L.: aetiology,anatomy and consequences for survival

A new type of vertebral malformation is described, consisting of deformed cartilaginous neural and haemal processes and the compression and fusion of vertebral bodies. The malformation is designated as haemal vertebral compression and fusion (haemal VCF). We studied the aetiology of the malformations and described microanatomical histopathological alterations. The malformations were detected during routine quality control in one of six monitored Gilthead sea bream populations. Haemal VCF affected the posterior part of the vertebral column (haemal vertebrae). In 20% of the deformed specimens, haemal VCF was combined with lordosis. At 35 dph (days post‐hatching), early anatomical signs of the haemal VCF consisted of abnormal centrum mineralization, malformed cartilaginous neural and haemal processes and developing lordotic alterations. The histological examination of the deformed individuals revealed that haemal VCF is preceded by notochord abnormalities. The frequency of deformed individuals was three times higher at 35 than at 61 dph (50.3% vs. 17.2%, n = 157 and n = 250, respectively). No signs of repair or reversion of malformations have been observed. Thus, the steep decrease in deformities in older animals suggests that haemal VCF is linked to high mortality rates. The results are discussed in respect of the possible causative factors of haemal VCF.     

Discarding practices in a Mediterranean small-scale fishing fleet (Patraikos Gulf, Greece)

Abstract  Discarding practices from 110 fishing operations in a Mediterranean small-scale fishing fleet (Patraikos Gulf, western Greece) from August 2004 to July 2005 were analysed. On average, 1 kg of fish was discarded per fishing operation (10% of the catch). The reasons for discarding were: low commercial value (78% of discards), damage at sea before retrieval of the gear (5%), and bad handling on-board (17%). More than half of discards belonged to Spicara flexuosa (L.), Lepidopus caudatus (Euphrasen), Sardinella aurita Valenciennes and Merluccius merluccius (L.). The bulk of discards of each species were associated with a single fishing method (metier). A Generalized Linear Model (Delta-X – error-model) indicated that, when discards were present, significant differences existed in the discard ratio among different métier groups (groups comprising métiers with similar characteristics). Longlines and trammel nets with small mesh-sizes had the highest discard ratios. Discarding practices for the species Diplodus annularis (L.), S. aurita , Squilla mantis (L.), S. flexuosa and Scorpaena scrofa (L.) did not follow a consistent pattern (these species were either fully discarded or fully retained during a fishing operation). The decision seemed to be dependent on market demands rather than fish size. Significant correlation was found between discarded and catch weight, but the presence of many outliers indicated deviance from a case where discards are high when there is an abundant catch. The findings of the study imply that monitoring and management should be carried out preferably on the métier level. Discards could be reduced by technical measures, controlling effort regulations and by improving working conditions on-board fishing vessels.     

Soil Degradation Due to Vicinal Intensive Hog Farming Operation Located in East Mediterranean

One of the main environmental impacts of concentrated animal feeding operations is the soil degradation in vicinity with the livestock breeding facilities due to substances such as ammonia emitted from the various stages of the process. Owing to the high temperatures of the Mediterranean ecosystems, the evolution of gasses is more extensive and the soil degradation is consequently more severe than those obtained in northern Europe. In this research, the soil degradation effects of a large meat-producing, processing, and packaging unit have been investigated. The investigated intensive hog farming operation (IHFO) is located at a limestone soil coastal area with sea to the north and hills to the south. Soil samples of the upper mineral soil were taken in various distances and directions from the IHFO boundaries. Thirteen experimental cycles were carried out in the duration of 1.5 years starting in March 2009 until October 2010. The soil samples were analyzed on pH and electrical conductivity (EC) values as well as NH₄ ⁺ and NO₃ ⁻ concentrations. Significantly higher concentrations of the two nitrogen forms were observed on samples at increasing proximity downwind from the farm (south). Southern soil average NH₄ ⁺ and NO₃ ⁻ concentrations ranged between 0.4–118 μg NH₄ ⁺-N g⁻¹ soil and 6.1–88.4 μg NO₃ ⁻-N g⁻¹ soil, respectively. The variation of emitted gasses depositions was clearly reflected in the average pH and EC values. Average pH and EC values downwind from IHFO boundaries varied between 7.1–8.2 and 140–268 μS/cm, respectively.     

Soil Mobilisation of Al, Fe and Mn Due to Vicinal Intensive Hog Farming Operation Located in East Mediterranean

Concentrated Animal Feeding Operation activities lead to soil degradation in vicinity with the livestock breeding facilities, mainly due to ammonia emissions from the various stages of the process. In this research, the soil degradation effects of an intensive hog farming operation (IHFO) located at a Mediterranean limestone soil coastal area, have been investigated. Soil samples of the upper mineral soil were taken in various distances (10?C1,500?m) and directions from the IHFO boundaries. Thirteen experimental cycles were carried out in the duration of 1.5?years starting in March 2009 until October 2010. The soil samples were analysed on total, exchangeable and water-soluble Al, Fe and Mn. Significantly higher concentrations of the exchangeable and water-soluble Al, Fe and Mn were observed on soil samples at increasing proximity downwind from the farm (south). Southern soil average concentrations of exchangeable Al³⁺, Fe³⁺ and Mn²⁺ ranged between 3.56 and 7.45?mmol Al³⁺ kg^?1 soil, 5.85 and 7.11?mmol Fe³⁺ kg^?1 soil and 2.36 and 5.03?mmol Mn²⁺ kg^?1 soil, respectively. Southern soil average concentrations of water-soluble Al, Fe and Mn forms ranged between 1.1 and 4.6?ppm Al, 0.5 and 0.8?ppm Fe and 0.4 and 1?ppm Mn, respectively.     

Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs)

Analysis of the human and mouse genomes identified an abundance of conserved non-genic sequences (CNGs). The significance and evolutionary depth of their conservation remain unanswered. We have quantified levels and patterns of conservation of 191 CNGs of human chromosome 21 in 14 mammalian species. We found that CNGs are significantly more conserved than protein-coding genes and noncoding RNAS (ncRNAs) within the mammalian class from primates to monotremes to marsupials. The pattern of substitutions in CNGs differed from that seen in protein-coding and ncRNA genes and resembled that of protein-binding regions. About 0.3% to 1% of the human genome corresponds to a previously unknown class of extremely constrained CNGs shared among mammals.     

Laboratory Study of Leaching Properties of Mediterranean Forest Species Ashes

For bioremediation of copper-contaminated soils, it is essential to understand copper adsorption and chemical forms in soils related to microbes. In this study, a Penicillium strain, which can tolerate high copper concentrations up to 150 mmol l^?1 Cu²⁺, was isolated from a copper mining area. The objective was to study effects of this fungus on copper adsorptions in solutions and chemical forms in soils. Results from lab experiments showed the maximum biosorptions occurred at 360 min with 6.15 and 15.08 mg g^?1 biomass from the media with Cu²⁺ of 50 and 500 mg l^?1, respectively. The copper was quickly adsorbed by the fungus within the contact time of the first 60 min. To characterize the adsorption process of copper, four types of kinetics models were used to fit the copper adsorption data vs. time. Among the kinetics models, the two-constant equation gave the best results, as indicated by the high coefficients of determination (R ²?=?0.89) and high significance (p?<?0.01). The addition of the fungal strain to autoclaved soil facilitated increases in concentrations of acid-soluble copper, copper bound to oxides, and of copper bound to organic matter (p?<?0.05). However, the inoculation of Penicillium sp. A1 led to a decrease of water-soluble copper in the soil. The results suggested that Penicillium sp. A1 has the potential for bioremediation of copper-contaminated soils.     

A fish kill at the Aposelemis dam (Crete,Greece) caused by heavy parasitism by Ichthyobodo sp.

A fish kill was recorded at the Aposelemis Dam, which is the main reservoir of drinking water for the island of Crete in Greece. Hundreds of goldfish were found dead at a side stream which provides water to the reservoir. The affected fish had been entrapped in a small pond at the side of the stream with practically zero water renewal as the event occurred in August which is a dry season for the island of Crete. The event was alarming for the local community since anthropogenic pollution was initially suspected which could pose a significant human health threat. Following examination of the fish, the mortality was attributed to heavy infection by the parasitic flagellate, Ichthyobodo sp., whilst no pollutants were detected. The parasite was studied through light and scanning electron microscopy and was identified molecularly.     

Evaluation of the incidence of the G143A mutation and cytb intron presence in the cytochrome bc-1 gene conferring QoI resistance in Botrytis cinerea populations from several hosts

BACKGROUND: Previous studies have shown that resistance of Botrytis cinerea to QoI fungicides has been attributed to the G143A mutation in the cytochrome b (cytb) gene, while, in a part of the fungal population, an intron has been detected at codon 143 of the gene, preventing QoI resistance. During 2005–2009, 304 grey mould isolates were collected from strawberry, tomato, grape, kiwifruit, cucumber and apple in Greece and screened for resistance to pyraclostrobin and for the presence of the cytb intron, using a novel real‐time TaqMan PCR assay developed in the present study. RESULTS: QoI‐resistant phenotypes existed only within the population collected from strawberries. All resistant isolates possessed the G143A mutation. Differences were observed in the genotypic structure of cytb. Individuals possessing the intron were found at high incidence in apple fruit and greenhouse‐grown tomato and cucumber populations, whereas in the strawberry population the intron frequency was lower. Cultivation of QoI‐resistant and QoI‐sensitive isolates for ten culture cycles on artificial nutrient medium in the presence or absence of fungicide selection showed that QoI resistance was stable. CONCLUSIONS: The results of the study suggest that a high risk for selection of QoI‐resistant strains exists in crops heavily treated with QoIs, in spite of the widespread occurrence of the cytb intron in B. cinerea populations. The developed real‐time TaqMan PCR constitutes a powerful tool to streamline detection of the mutation by reducing pre‐ and post‐amplification manipulations, and can be used for rapid screening and quantification of QoI resistance. Copyright © 2011 Society of Chemical Industry     

Soil Depletion of Ca, Mg and K Due to Vicinal Intensive Hog Farming Operation Located in East Mediterranean

One of the main environmental impacts of concentrated animal feeding operations is soil degradation in the vicinity of the livestock breeding facilities due to substances such as ammonia emitted from the various stages of the process. In this research, the soil degradation effects of an intensive hog farming operation (IHFO) located at a Mediterranean limestone soil coastal area have been investigated. Soil samples of the upper mineral soil were taken in various distances and directions from the IHFO boundaries. Thirteen experimental cycles were carried out in the duration of 1.5?years starting in March 2009 until October 2010. The soil samples were analysed on total, exchangeable and water-soluble Ca, Mg and K as well as water-soluble ammonium concentrations. Significantly lower concentrations of the exchangeable and water-soluble base cations were observed on soil samples at increasing proximity downwind from the farm (south). Southern soil average concentrations of exchangeable base cations ranged between 78.6 and 128.52?mmol Ca²⁺?kg^?1 soil, 8.42?C21.39?mmol?Mg²⁺?kg^?1 soil and 4.25?C8.1?mmol?K⁺?kg^?1 soil, respectively. Southern soil average concentrations of water-soluble base cations ranged between 0.57 and 2.17?mmol Ca²⁺?kg^?1 soil, 0.16?C0.89?mmol?Mg²⁺?kg^?1 soil and 0.48?C0.95?mmol?K⁺?kg^?1 soil, respectively.