Age‐dependent distribution of juvenile southern bluefin tuna (Thunnus maccoyii) on the continental shelf off southwest Australia determined by acoustic monitoring

Juvenile southern bluefin tuna (Thunnus maccoyii, SBT) were monitored in nearshore waters off southwest Australia using acoustic tagging and monitoring over five austral summers (2002/2003–2006/2007) to determine patterns in age‐based distribution of SBT. A total of 20–70 receivers were deployed in early December along one to three cross‐shelf transects and at three inshore topographic features (lumps) where SBT are known to occur; and a total of 59–84 juvenile SBT (41–90 cm fork length) were tagged and released each year. After several months, receivers were recovered, and data extracted. In 2002/2003 and 2003/2004, 2‐yr‐old SBT were detected more frequently in nearshore areas than did 1‐yr old fish. Similarly in 2004/2005 and 2006/2007, it was the larger 1‐yr‐old SBT that were detected more frequently at inshore lumps (>85% of detections) while small 1‐yr‐old SBT were detected more widely over the study area. In 2005/2006, although large 1‐yr‐old SBT were still detected more frequently at inshore lumps than small 1‐yr old SBT, the percentage of all detections at lumps was lower at 31.5%, indicating wider distribution of both small and large age‐1 fish. The observed age‐dependent distribution pattern may be enhanced by the distribution of prey, which disperse or concentrate depending on the local oceanography.     

Gene constitution of South-East Asian native chickens, commercial chickens and jungle fowl using polymorphisms of four calpain genes

The gene constitution of polymorphisms of the four calpain genes (µ‐calpain, m‐calpain, p94, and µ/m‐calpain) were analyzed in South‐East Asian native chickens, White Leghorn and Broiler commercial chickens, and Red and Green jungle fowl. Polymorphisms were detected at all loci in chickens and Red jungle fowl, but only for CAPN1 (µ‐calpain gene) in Green jungle fowl. CAPN2 and CAPN1.5 are linked on chicken chromosome 3, and the genotype for these loci were treated as haplotype. Some combinations of calpain loci were tested using principal component analysis, and the best combination (CAPN1, CAPN3, and CAPN1.5) was determined. The proportion of polymorphic loci (P_poly) and heterozygosity (H?) were 1.00 and 0.316–0.465 in domestic chickens and red jungle fowl, and 0.33 and 0.137 in Green jungle fowl, respectively. G_ST values suggested that the degree of subdivision among native chickens was relatively low except for Thailand, which was highest. Pair‐wise F_ST testing, dendrogram and principal component analysis from the results of calpain loci showed that the four South‐East Asian native and commercial chicken populations were close genetically.     

Interannual variation in summer habitat utilization by juvenile southern bluefin tuna (Thunnus maccoyii) in southern Western Australia

The spatial habitat utilization of juvenile southern bluefin tuna in southern Western Australia was investigated using automated acoustic receivers with acoustic transmitters implanted in tagged fish during three austral summers (2004/2005, N = 79 fish, 2005/2006, N = 81, 2006/2007, N = 84). Seventy acoustic receivers were deployed at three cross-shelf lines and three coastal topographic features (lumps) between December and May. We observed markedly different patterns of habitat utilization between the three seasons: (i) aggregation at lumps in 2004/2005 and 2006/2007, and (ii) wide distribution over the continental shelf (i.e., few occurring at lumps) in 2005/2006. Vertical profile by conductivity-temperature-depth casts showed these spatial shifts were caused by interannual changes in the presence of sub-Antarctic water. The sub-Antarctic water was present in the subsurface layer close to the continental slope only during 2005/2006, and the area had higher chlorophyll-a concentrations than the coastal areas, including at the lumps. These environmental characters, related to the nutrient rich sub-Antarctic water, appear to have a strong influence on fish distributions in 2005/2006, and may occur generally during La Niña events. Interannual fluctuations in habitat utilization will influence detection of fish in recruitment monitoring surveys and thus bias the resulting juvenile abundance indices.     

Naupliar copepod concentrations in the spawning grounds of Japanese sardine, Sardinops melanostictus, along the Kuroshio Current

Naupliar copepods were distributed at similar concentrations over the waters inshore and offshore of the Kuroshio Current off central Japan in early spring 1993 and 1994, overlapping with the distribution of early feeding larvae of Sardinops melanostictus . Although N, P, Si and chlorophyll a concentrations were higher in the waters inshore of the Kuroshio axis than in the offshore waters, the mean concentrations of nauplii were not statistically different between the two waters. Food availability for larval S. melanostictus did not seem to be different between the two waters in terms of the mean food concentrations. Using the critical food concentration (>9 nauplii L^–1) for 25% survival during 3 days after first feeding derived from a rearing experiment, percentages in number of stations or water samples with nauplii concentrations >9 nauplii L^–1 were higher in the inshore waters than in the offshore waters in both years examined. Considering that fish larvae may depend on small-scale patchiness of food for their survival, the inshore waters seemed to be more favourable for first-feeding larvae than the offshore waters.     

A new device for monitoring the activity of freely swimming flatfish, Japanese flounder Paralichthys olivaceus

ABSTRACT:   The tail beat and activity behavior of four captive Japanese flounder Paralichthys olivaceus , were monitored with acceleration data-loggers while the fish swam in an aquarium. Depth, swimming speeds and two-axis acceleration data were collected continuously for approximately 20 h per fish. Simultaneously, the swimming behaviors of the fish were filmed at different angles. Using the specific characteristic of the acceleration profiles, in tandem with other types of data (e.g. speed and depth), four behavioral patterns could be distinguished: (i) 'active' swimming; (ii) burying patterns; (iii) 'inactive' gliding; and (iv) lying on the bottom. Tail beat frequency ranged from 1.65 ± 0.47 to 2.04 ± 0.25 Hz (mean ± SD; n  = 4). Using the relationship between tail beat frequency and swimming speed, the 'preferred' swimming speed of the fish was estimated to be between 0.6 and 1.2 body lengths (BL)/s. Additionally, fish rarely swam faster than 1.2 BL/s. This study shows that the acceleration data-loggers represent a useful and reliable system for accurately recording the tail beat of free-ranging fish and estimating flatfish behavior.     

Linkage mapping of four chicken calpain genes

Calpains are intracellular Ca²⁺‐dependent proteases and enzymes that contribute to growth and meat quality. In the present study, we identified polymorphisms in four calpain genes (CAPN1, CAPN2, CAPN3, and CAPN1.5) expressed ubiquitously in chicken using polymerase chain reaction‐restriction fragment length polymorphism, and mapped them using two backcross families (East Lansing (EL) and Kobe University (KU)). CAPN2 and CAPN1.5 mapped to two locations on chromosome 3 about 30 cM apart, while CAPN3 mapped to chromosome 5. CAPN1 was linked to a previously unlinked microsatellite marker LEI0140 to form a new linkage group called E66. CAPN2 and CAPN3 extend the amount of conserved synteny between chicken chromosome 3 and human chromosome 1, and between chicken chromosome 5 and human chromosome 15, respectively. Although CAPN2, CAPN3, and CAPN1.5 were found in the University of California Santa Cruz chicken genome browser gateway, CAPN1 and LEI0140 were not in specific genomic positions.