DNA barcoding of fish eggs collected off northwestern Cuba and across the Florida Straits demonstrates egg transport by mesoscale eddies

Identifying spawning sites for broadcast spawning fish species is a key element of delineating critical habitat for managing and regulating marine fisheries. Genetic barcoding has enabled accurate taxonomic identification of individual fish eggs, overcoming limitations of morphological classification techniques. In this study, planktonic fish eggs were collected at 23 stations along the northwestern coast of Cuba and across the Florida Straits to United States waters. A total of 564 fish eggs were successfully identified to 89 taxa within 30 families, with the majority of taxa resolved to species. We provide new spawning information for Luvarus imperialis (Louvar), Bothus lunatus (Plate Fish), Eumegistus illustris (Brilliant Pomfret), and many economically important species. Data from most sites supported previously established patterns of eggs from neritic fish species being found on continental shelves and oceanic species spawning over deeper waters. However, some sites deviated from this pattern, with eggs from reef‐associated fish species detected in the deep waters of the Florida Straits and pelagic species detected in the shallow, continental shelf waters off the coast of northwestern Cuba. Further investigation using satellite imagery revealed the presence of a mesoscale cyclonic eddy that likely entrained neritic fish eggs and transported them into the Florida Straits. The technique of combining DNA‐based fish egg identification with remotely‐sensed hydrodynamics provides an important new tool for assessing the interplay of regional oceanography with fish spawning strategies.     

Catch composition and conservation management of a human-dolphin cooperative cast-net fishery in the Ayeyarwady River, Myanmar

A study of the catch composition of a cooperative fishery practiced between cast-net fishermen and Irrawaddy dolphins (Orcaella brevirostris) in the Ayeyarwady River, Myanmar, was conducted at fishing grounds near Myay Zun, Indown, The‘ Kyun and Hsithe during November and December 2006 and 2007. A total of 4139 fish from 42 species and five crustaceans from a single species were recorded in 1099 net casts made during 33 fishing sessions. Sufficient data were only available to conduct in-depth analyses of catches obtained from Myay Zun (776 net casts, 41.2% while cooperating with dolphins). These analyses indicated that catch per cast, defined by the number of fish, their weight and economic value, was higher (Mann-Whitney P < 0.001) during both 2006 (about double for all parameters) and 2007 (about triple for all parameters) while the dolphins were cooperating with fishermen. Differences in catch between cooperative and non-cooperative net casts were primarily explained by the much higher frequency of empty catches (Chi-square P < 0.001, df = 3 during both 2006 and 2007) recorded during non-cooperative casts (68.3% and 71.3% in 2006 and 2007, respectively) versus cooperative casts (13.7% and 31.6% in 2006 and 2007, respectively). Overall, fish catch could be described as meager, which may partially be explained by the abnormal timing of flow recession during both years. However, the cast-net fishermen also consistently reported dramatically depleted catches in recent years due to illegal electric fishing. Elimination of electric fishing in a recently established protected area will be crucial for conserving the dolphins and the cooperative cast-net fishery.     

DNA barcoding reveals clear delineation between spawning sites for neritic versus oceanic fishes in the Gulf of Mexico

We combined research‐vessel cruises of opportunity with DNA barcoding to survey planktonic, percomorph fish eggs at 40 stations distributed across and around the Gulf of Mexico (GoM). The objectives were (a) to determine whether eggs of fishes that are potential candidates for the daily egg production method (DEPM) can be readily barcoded, (b) to identify taxa that are spawning in the GoM, (c) to determine encounter rates for eggs of economically valuable taxa, and (d) to characterize individual egg taxa as being primarily neritic, primarily oceanic, or primarily mixed (i.e., both neritic and oceanic). Of the 1,144 eggs that were individually barcoded, 709 (62%) were definitively identified to species (62 species from 42 families), with an additional 20 taxa identified to genus or subfamily level. The eggs of 15 economically important species were identified, most of which had intermediate encounter rates and moderately dispersed spatial distributions, as indicated by an index of aggregation. SIMPROF analysis of stationwise cluster analysis identified eight significant groups within the 35 stations that yielded percomorph eggs; a corresponding specieswise analysis identified six groups of stations as having a neritic egg community and two groups as having an oceanic community, with a community transition located at the shelf break. Although the neritic and oceanic stations did not share important species, it remains possible that coastal pelagic species have mixed neritic–oceanic distributions. Together, these results indicate DEPM fish‐egg surveys based on DNA barcoding are feasible at the large marine ecosystem scale.