Mechanisms associated with tiller suppression under stagnant flooding in rice

Stagnant flooding (SF) during vegetative growth triggers stem elongation usually at the cost of tiller production in rice, reducing grain yield. To explore physiological mechanisms associated with tillering suppression under SF, three contrasting genotypes (Swarna and Swarna‐Sub1, both sensitive and IRRI154, tolerant) were evaluated under standing water depths of 0, 5, 30 and 50 cm. SF significantly suppressed tiller formation but increased plant height, root biomass, shoot elongation (ratio of plant height before and after flooding), leaf emergency and non‐structural carbohydrate (NSC) concentration (in root–shoot junction) in all genotypes at the early stage of development. Chlorophyll concentration in the upper leaves (upper most fully expanded leaf at top) was higher than in lower leaves (lowest green leaf at base), but decreased under SF in both. SF increased hydrogen peroxide (H₂O₂) at the early stage of treatment, with concomitant increase in malondialdehyde (MDA) production by stems and leaves. MDA concentration in root–shoot junction increased but delayed. Tiller number correlated negatively with plant height, shoot elongation, leaf emergency, MDA concentration in leaves and root–shoot junction, root biomass, and NSC concentration in the root–shoot junction. The results suggested existence of compensatory mechanisms between tiller growth and shoot elongation in rice for resilience under SF, where energy is mainly diverted for shoot elongation to escape flooding. The SF‐tolerant genotype produced less H₂O₂ and maintained energy balance for higher survival and better growth under stagnant flooding.     

New invasive predator reduces the abundance of native prey in a cold-temperate marine fouling community

1. Invasive species threaten the conservation of marine environments, and urgent management strategies are needed to prevent their introduction, establishment and spread. Specifically, marine invasive predators destabilize ecological interactions and alter community structure and function. However, most of the evidence showing the effect of these predators is restricted to a few species and regions, while for others the information remains scarce.
2. This study experimentally evaluated the ecological effects of the sea slug Pleurobranchaea maculata, a recently introduced invasive predator, on the fouling communities of a cold-temperate port in the South-western Atlantic.
3. The results show that increasing predation pressure reduces significantly the abundance of sea anemones, which are among the preferred prey items.
4. This study reveals new evidence to help better understand the effects of P. maculata on the biological communities of a recently invaded region. Furthermore, it provides the first experimental evidence supporting the hypothesis that marine invasive predators can induce a significant decrease in the abundance of native species in benthic communities of cold-temperate marine environments in the South-western Atlantic.

     

Morpho-Physiological Changes in Roots of Rice Seedling upon Submergence

Submergence is a serious environmental condition that causes large loss in rice production in rain fed lowland and flood affected area. This study evaluated morphological and physiological responses of rice roots to submergence using two tolerant rice genotypes FR13A and Swarna-Sub 1 and two sensitive ones Swarna and IR42. The tolerant genotypes had higher survival rate and less shoot elongation but greater root elongation during submergence than the sensitive ones. After submergence,the tolerant genotypes also had higher root dry weight and more active roots than the sensitive ones.Tolerant genotypes exhibited less root injury, with less malondialdehyde production and slower electrolyte leakage after submergence. Tolerant genotypes also maintained higher concentrations of soluble sugar and starch in roots and shoots and higher chlorophyll retention after submergence than the sensitive ones.Our data showed that root traits such as root activity and root growth are associated with survival rate after submergence. This is probably accomplished through higher energy supply, and membrane integrity is necessary to preserve root function and reduce injury during submergence. These root traits are important for submergence tolerance in rice.     

Structural equation models to disentangle the biological relationship between microbiota and complex traits: Methane production in dairy cattle as a case of study

The advent of metagenomics in animal breeding poses the challenge of statistically modelling the relationship between the microbiome, the host genetics and relevant complex traits. A set of structural equation models (SEMs) of a recursive type within a Markov chain Monte Carlo (MCMC) framework was proposed here to jointly analyse the host–metagenome–phenotype relationship. A non-recursive bivariate model was set as benchmark to compare the recursive model. The relative abundance of rumen microbes (RA), methane concentration (CH₄) and the host genetics was used as a case of study. Data were from 337 Holstein cows from 12 herds in the north and north-west of Spain. Microbial composition from each cow was obtained from whole metagenome sequencing of ruminal content samples using a MinION device from Oxford Nanopore Technologies. Methane concentration was measured with Guardian^® NG infrared gas monitor from Edinburgh Sensors during cow's visits to the milking automated system. A quarterly average from the methane eructation peaks for each cow was computed and used as phenotype for CH₄. Heritability of CH₄ was estimated at 0.12 ± 0.01 in both the recursive and bivariate models. Likewise, heritability estimates for the relative abundance of the taxa overlapped between models and ranged between 0.08 and 0.48. Genetic correlations between the microbial composition and CH₄ ranged from −0.76 to 0.65 in the non-recursive bivariate model and from −0.68 to 0.69 in the recursive model. Regardless of the statistical model used, positive genetic correlations with methane were estimated consistently for the seven genera pertaining to the Ciliophora phylum, as well as for those genera belonging to the Euryarchaeota (Methanobrevibacter sp.), Chytridiomycota (Neocallimastix sp.) and Fibrobacteres (Fibrobacter sp.) phyla. These results suggest that rumen's whole metagenome recursively regulates methane emissions in dairy cows and that both CH₄ and the microbiota compositions are partially controlled by the host genotype.     

Comparison of adaptability to flash flood between rice cultivars differing in flash flood tolerance

The mechanism of flash flood tolerance was investigated by using a flash flood-intolerant rice cultivar (Oryza sativa), IR42 and a tolerant one, FR13A. The photosynthetic rate of the rice seedlings from both types of cultivars decreased during submergence, whereas the photosynthetic rate of FR13A remained higher than that of IR42. The decrease in photosynthesis in IR42 was partially due to a higher inhibition of the activities of ribulose-1,5-bisphosphate carboxylase, fructose-1,6-bisphosphatase, and glyceraldehyde-3-phosphate dehydrogenase, than in FR13A. After submergence receded (hereafter referred as “desubmergence”), both types of submerged rice cultivars experienced oxidative damage. However the oxidation of the lipids and proteins in FR13A was maintained at a lower level than that in IR42 after desubmergence. On the other hand, the superoxide dismutase activity in FR13A increased more than that in IR42 after desubmergence. Moreover, the content of total ascorbate (reduced and oxidized ascorbates), a main antioxidant increased in FR13A, while in IR42 the content remained low after desubmergence. It is assumed that the photosynthetic activity during submergence may be related to flash flood tolerance. Moreover, flash flood tolerance requires a rapid stimulation of antioxidant systems after desubmergence.     

COX-2 and sPLA2 inhibitory activity of aqueous extract and polyphenols of Rhizophora mangle (red mangrove)

The aqueous extract of Rhizophora mangle bark and its polyphenolic fractions showed remarkable in vitro antiinflammatory activity in a preliminary study. The low molecular weight fraction exhibited cyclooxygenase-2 inhibitory activity while the total aqueous extract and the low molecular weight fraction showed secretory phospholipase A(2) inhibitory activity.     

In vivo digestibility and nitrogen balance in sheep diets with foliage of fodder trees in substitution for soybean meal

Apparent digestibility and nitrogen (N) balance were evaluated in sheep fed low-quality Cynodon nlemfuensis grass supplemented with different foliages of forage-potential trees. Four male hair sheep were housed in metabolic cages and fed in a Latin Square design with 30 % inclusion of foliage of Erythrina indica (Ei), Moringa oleifera (Mo), or Trichanthera gigantea (Tg) replacing soybean meal. Adaptation and faeces and urine collection periods were 14 and 7 days, respectively. Sheep received 70 g DM/kg/BW^0.75 of the diet in order to achieve total consumption of feed. Dry matter, organic matter, and neutral detergent fiber digestibilities were similar (P > 0.05) among the control, Mo, and Ei diets, while the Tg diet resulted in the lowest (P < 0.05) value. The Ei diet showed the highest (P < 0.05) total N intake among the three diets with 30 % of leaf meal, which was similar (P > 0.05) to the control diet. N excreted in faeces was highest (P < 0.05) in the Tg diet when compared to the other leaf meal diets, in which the Mo diet presented the lowest (P < 0.05) value, but was similar (P > 0.05) to that found in the control diet. The Mo and Ei diets had similar (P > 0.05) values for the percent of N absorbed by the animals, which was much higher (P < 0.05) than that of the Tg diet. The forage of M. oleifera and Ei can be used in diets at 30 % incorporation to substitute the use of soybean meal in small ruminant production.     

Soil carbon dioxide flux and rice photosynthesis

Measurement of CO₂ concentration in air at 25 em below and 100 em above the canopy of a good rice crop indicated that a severe CO₂ deficit occurred around the photosynthetic surface of crop when light intensity was high. Soil CO₂ flux as measured by the soda lime method in a closed system ranged from 3.9 to 5.7 g.m^-2. day^-1 under flooded conditions and from 6.0 to 8,6g.m^-2 .day^-1 under drained conditions. Cropped soil released more CO₂ than bare soil under both flooded and drained conditions. The estimated contribution of soil CO₂ to gross photosynthesis was 6%, for the flooded soil and 7% for the drained soil or a contribution of 9 and 12% to net dry matter production. These results together with other information indicate that atmospheric CO₂ is the most important source of CO₂, in crop photosynthesis, soil CO₂ released into atmosphere Is second most important, and soil CO₂ absorbed by plant roots is almost negligible.     

Modulation of innate immunity in chickens induced by in vivo administration of baculovirus

Baculoviruses stimulate cytokine production in mammalian cells. They induce a strong innate immune response in animals and have adjuvant properties. The purpose of this work was to study the in vivo effect of baculovirus on chicken innate immune response. SPF chickens were inoculated intravenously with Autographa californica nuclear polyhedrosis virus (BV). Three hours later, chickens were bled, euthanized and their spleen, duodenum and cecal tonsils were excised in order to take samples for RNA extraction and real time PCR, and to isolate lymphocytes, which were stained and analyzed by flow cytometry. The results obtained showed that baculovirus inoculation up-regulates the expression of IFN-γ, IL-6 and LITAF in spleen cells. This result (IFN-γ) correlated with that obtained by ELISA which showed a very strong increase of IFN-γ in chicken plasma. Flow cytometry analysis revealed that BV inoculation induced in spleen an increase in the percentage of monocyte/macrophage population together with an increase in CD3(+)CD4(+) T lymphocytes. On the other hand, BV inoculation decreased the percentage of CD3(+)CD4(+) T lymphocytes and increased the percentage of NK cells in cecal tonsils. However, intraepithelial lymphocytes of the gut did not show differences between BV and control treated animals. Even though further studies in order to understand the mechanisms by which BVs affect the avian immune response are needed, results obtained in the present work demonstrate the ability of BVs to stimulate the innate immunity in chickens, modifying the expression pattern of related genes and the profile of the immune cells involved.     

Effect of Water Temperature on Reproductive Tract Condition of Penaeus setiferus Adult Males

Abstract— This study was conducted to determine the effect of water temperature on male reproductive tract degenerative syndrome (MRTDS) and male reproductive system melanization (MRSM) in Penaeus setiferus , and to evaluate the effect of water temperature on spermatophore regeneration time and sperm quality in electrically ejaculated adult males. Variation in sperm quality, gonadosomatic index, and histological changes in the reproductive system were used to assess reproductive tract changes in the first experiment. Sperm quality and regeneration time were measured before and after successive regenerations in the second experiment. Sperm quality was stable when shrimp were held at 26 C for 30 d but was reduced when shrimp were held at 30 C. Reproductive tissues of 20% of the shrimp held at 30 C were melanized to some degree but tissue melanization was found in only 2.5% of the shrimp held at 26 C. Spennatophore regeneration time was also affected by temperature. Average times for first spermatophore regeneration were 192 h at 25 C, 152 h at 30 C, and 144 h at 33 C. Sperm quality of regenerated shrimp was not affected at 25 C but was reduced for regenerated animals held at 33 C. Based on these results, we recommend a water temperature between 25 and 27 C to obtain adequate spermatophore regeneration and to maintain healthy male P. setiferus broodstock for at least 30 d.