Harbour seal (Phoca vitulina) abundance within the Firth of Tay and Eden Estuary,Scotland: recent trends and extrapolation to extinction

1. Aerial surveys have detected alarming declines in counts of harbour seals in several regions across Scotland.
2. Demographic data and simple models were used to examine the recent decline in the numbers of harbour seals counted in one population within a Special Area of Conservation (SAC) on the east coast of Scotland. The models suggest that the continuation of current trends would result in the species effectively disappearing from this area within the next 20 years.
3. While the cause of the decline is unknown, it must be reducing adult survival because the high rate of decline cannot be wholly accounted for by changes in other demographic parameters.
4. Recovery of the population to the abundance recorded at the time the SAC was designated (2005) is likely to take at least 40 years, even if the cause of the decline is immediately identified and removed.
5. The models suggest that partial removal of the cause can have only limited benefits to population recovery, and there are unlikely to be any long‐term benefits from introducing or reintroducing additional individuals while the underlying problem persists. Therefore, if the population of harbour seals in this area is to recover it is essential that the sources of the increased mortality are identified and measures are put in place to manage these.

Copyright © 2015 John Wiley & Sons, Ltd.     

Soil carbon increases with long-term cattle stocking in northern temperate grasslands

Grassland management aimed at enhancing carbon (C) in soil is an important tool in mitigation of rising atmospheric CO₂, yet little is known of how grassland soil C changes with livestock stocking rate (SR). We relate soil organic and inorganic C mass (t ha⁻¹ to 60 cm depth) with cattle stocking over periods of 7–27 year for 32 paddocks distributed across nine community pastures in the mixed-grass prairie of Saskatchewan, Canada. Initial analysis comparing Akaike information criterion models showed that cattle SR explained a greater proportion of variance in soil C, particularly soil organic C, than rainfall. Soil organic C mass increased with cattle SR (R² = .293; p = .001), even when the latter was normalized to account for differences in vegetation composition and growing conditions among pastures. Normalized SR varied from 0.49 to 2.30 times recommended levels, over which SOC increased from 24.7 to 57.4 t ha⁻¹. Increases in soil organic C under greater stocking coincided with increased abundance of introduced vegetation, particularly the rhizomatous grass Poa pratensis. Inorganic soil C accounted for 34.6% of total soil C, being particularly large below 30 cm soil depth, but did not vary with stocking rate. These findings indicate that both organic and inorganic C are important pools of C in northern temperate grassland soils, with soil organic C positively associated with long-term cattle SR. Further studies are recommended to understand more fully the mechanisms regulating grazing impacts on soil C mass in northern temperate grasslands.     

Limiting Amino Acids in Practical Diets for California Yellowtail,Seriola lalandi

Three trials were run to identify the limiting dietary amino acids in practical, soy‐based formulations for California yellowtail juveniles. In the first trial, four diets were formulated with 20% fish meal and 43% soy protein concentrate. The basal diet was supplemented with methionine, lysine, and taurine (MLT), and each supplement was then individually deleted in three additional diets (LT, MT, and ML). A significant decrease in growth was only seen in fish fed the ML diet. The second and third trials were designed to test graded levels of dietary taurine and methionine, respectively. Dietary taurine ranged from 0.32 to 1.5%, and methionine levels ranged from 0.95 to 1.19% of the diet with constant levels of cysteine (0.73%). While weight gains were considered adequate to detect a dietary amino acid deficiency, there was no significant effect of graded levels of either taurine or methionine on final weights, growth rates, survival, or feed efficiency. In conclusion, the practical diets tested required taurine supplementations, but did not require lysine or methionine supplementation. While these data are insufficient to determine the taurine or methionine requirement of California yellowtail, it provides minimum levels likely to meet these requirements. Additional research is necessary to determine taurine and methionine requirements precisely in this species.     

Movement rules for juvenile steelhead: dynamic linking of movement behaviour to habitat and density

We incorporated explanatory factors including stream habitat type and fish density into individual‐based models with dynamic connections among adjacent habitat units to infer dispersal behaviour of juvenile steelhead Oncorhynchus mykiss in a Great Lakes watershed. We used mark–recapture data and an inverse modelling approach to estimate daily probability of steelhead moving out of a habitat unit, P(move), according to four competing models. The models used included (i) a null model where all fish had equal movement probability; (ii) a habitat‐dependent model where P(move) depended on the habitat type; (iii) a density‐dependent model of P(move); and (iv) a model where P(move) depended on both density and habitat type. The habitat‐dependent model provided the most parsimonious fit to the observed data according to Akaike's information criteria (AICc). In the null model, P(move) averaged 0.70, whereas P(move) averaged 0.75 in pools, 0.68 in riffles and 0.73 in runs in the habitat‐dependent model.     

Longitudinal data collection of Mycobacterium avium subspecies Paratuberculosis infections in dairy herds: the value of precise field data

Longitudinal infection data on Mycobacterium avium subspecies paratuberculosis (MAP) was collected on three dairy farms in Northeastern United States during approximately 10 years. Precise data on animal characteristics and animal location within farm were collected on these farms. Cows were followed over time with regard to MAP status during biannual fecal and serum sampling and quarterly serum sampling. Approximately 13 000 serum samples, 6500 fecal samples and 2000 tissue samples were collected during these years. Prevalence of positive samples was 1.4% for serological samples, 2.2% in fecal samples and 16.7% in tissue samples. Infection dynamics of MAP was studied and resulted in a number of potential changes in our understanding of MAP infection dynamics. First, a high prevalence of MAP infection was observed in these herds due to lifetime follow up of cows, including slaughter. Second, two distinctly different infection patterns were observed, so called non-progressors and progressors. Non-progressors were characterized by intermittent and low shedding of MAP bacteria and a virtual absence of a humoral immune response. Progressors were characterized by continuous and progressive shedding and a clearly detectable and progressive humoral immune response. Strain typing of MAP isolates on the three farms identified on two of three farms a dominant strain type, indicating that some strains are more successful in terms of transmission and infection progression. Continuous high quality longitudinal data collection turned out to be an essential tool in our understanding of pathobiology and epidemiology of MAP infections in dairy herds.     

In vitro plantlet formation from embryonic explants of eastern white cedar (Thuja occidentalis L.)

A protocol is described for the in vitro production of plantlets from embryonic explants of eastern white cedar (Thuja occidentalis L.). Bud induction was optimal when embryonic explants were cultured for 20-25 days on half-strength Quoirin and Le Poivre mineral salts containing equimolar concentrations (10(-6) M) of N(6)-benzyladenine and 2-isopentyl adenine. Bud development was achieved in phytohormone-free medium in the presence of activated charcoal. Maximal shoot elongation occurred on half-strength Quoirin and Le Poivre salts, whereas shoot multiplication was optimal on half-strength Bornman's MCM salts in the presence of cytokinin. Hardened shoots, dipped in commercial rooting powder containing indole-3-butyric acid, rooted optimally in mist under non-sterile greenhouse conditions. Both rooting and subsequent plantlet growth was best when Redi-Earth((R)) was used as a substrate. Over 250 plantlets per embryo can be produced annually by this technique.     

Ecological interactions between fungi, other biota and forest litter composition in a unique Scottish woodland

The composition of forest litter and understorey layer, andfungal biomass (in terms of ergosterol) were measured in eightsubplots over a winter–spring period (January to April).The sampling site was positioned in a range of woodland habitats(variously dominated by beech, Fagus sylvatica; birch, Betulapendula x pubescens, and oak Quercus petraea) and a clear areacovered with grass (dominated by Holcus lanatus). The resultswere analysed together with data on bacteria and microinvertebratesavailable from parallel research. Levels of ergosterol in individualsubplots ranged between 50 and 160 µg g^–1 DW. Fungalbiomass decreased in March, and then increased significantlyin April. Stepwise regression models for ergosterol indicatedpositive relationships with moisture content (February), bacteria(all but February and March), flagellates (February) and plant-feedingnematodes and flies (January, overall). The relationships withroots, seeds, the collective variable ‘other microinvertebrates’(all March), amoebae (February) and fragments (March, overall)were negative, while the relationship between fungi- and microbial-feedingnematodes changed sign between February (–) and March(+). Results of analysis of covariance for fungal ergosterolwere significant only for January and the combined dataset.In January, fungi were shown to be significantly related toamoebae, bacteria and a collembolan Folsomia candida, whilethe only significant predictor returned by the overall modelwas bacteria. Correlation analysis confirmed some effects alreadynoted, and revealed a number of further interactions. The resultshighlighted the complexity of factors influencing temporal dynamicsand spatial variability of fungal biomass in forest litter.Most of the registered interactions appeared to be transient,and this should be taken into account while interpreting environmentalobservations. Interpretation of the specific relationships isgiven and implications for further research and overall ecosystemfunctioning are discussed.     

A study of the bonding forces between the epithelial cells surrounding the resin canals of slash pine (Pinus elliottii Engelm.) holocellulose

Summary Although the bonds between the cellular components of pine epithelia (isolated from holocellulose) can be strengthened by the addition of multivalent ions such as those of calcium, iron, uranium, etc., it was observed that these bonds are only weakened and not destroyed by the removal of the ions from the tissues. Reagents, such as KOH and K₂SO₄, which do not yield soluble calcium salts, do not cause a discernible weakening of the bonds between the cellulose components of epithelia pretreated with Ca ion. Washing the weakened epithelia with water causes them to swell. The separation of epithelial cells occurs only after the application of mechanical forces to the tissues. Electron microscopic examination of the swollen and unswollen tissues shows that fibrils and lamellae extend between the individual cells which must be destroyed by mechanical action before cell separation can occur. The swelling of the tissues by washing after removal of multivalent ions was attributed to the expansion of electrical double layers and to the increasing osmotic pressure from the increasing Donnan potential, while the difference in swelling as a result of HCl treatment vs. KCl and K₄Fe(CN)₆ was attributed to differences in charge development and to hydrogen bonding between acidic components. The restrengthening of the tissue as a result of the readdition of multivalent ion was attributed to the collapse of the electrical double layers and the reduction of the Donnan potential, with the re-forming of bonds between the components of the epithelia. Evidence suggesting that multivalent ions actually participate in bonding was obtained and although the nature of the bonding cannot be determined, both salt formation and complex formation between the ions and the components of the tissues is suggested.     

Soil carbon distribution and quality in a montane rangeland-forest mosaic in northern Utah

Relatively little is known about soil organic carbon (SOC) dynamics in montane ecosystems of the semi-arid western U.S. or the stability of current SOC pools under future climate change scenarios. We measured the distribution and quality of SOC in a mosaic of rangeland-forest vegetation types that occurs under similar climatic conditions on non-calcareous soils at Utah State University's T.W. Daniel Experimental Forest in northern Utah: the forest types were aspen [Populus tremuloides] and conifer (mixture of fir [Abies lasiocarpa] and spruce [Picea engelmannii]); the rangeland types were sagebrush steppe [Artemisia tridentata], grass-forb meadow, and a meadow-conifer ecotone. Total SOC was calculated from OC concentrations, estimates of bulk density by texture and rock-free soil volume in five pedons. The SOC quality was expressed in terms of leaching potential and decomposability. Amount and aromaticity of water-soluble organic carbon (DOC) was determined by water extraction and specific ultra violet absorbance at 254 nm (SUVA) of leached DOC. Decomposability of SOC and DOC was derived from laboratory incubation of soil samples and water extracts, respectively.

Although there was little difference in total SOC between soils sampled under different vegetation types, vertical distribution, and quality of SOC appeared to be influenced by vegetation. Forest soils had a distinct O horizon and higher SOC concentration in near-surface mineral horizons that declined sharply with depth. Rangeland soils lacked O horizons and SOC concentration declined more gradually. Quality of SOC under rangelands was more uniform with depth and SOC was less soluble and less decomposable (i.e., more stable) than under forests. However, DOC in grass-forb meadow soils was less aromatic and more bioavailable, likely promoting C retention through cycling. The SOC in forest soils was notably more leachable and decomposable, especially near the soil surface, with stability increasing with soil depth. Across the entire dataset, there was a weak inverse relationship between the decomposability and the aromaticity of DOC. Our data indicate that despite similar SOC pools, vegetation type may affect SOC retention capacity under future climate projections by influencing potential SOC losses via leaching and decomposition.