Nutritional Contribution of Biofloc within the Diet of Growout and Broodstock of Litopenaeus vannamei,Determined by Stable Isotopes and Fatty Acids

The relative contributions of feed sources were determined through the isotopic signal (δ¹³C and δ¹⁵N) and fatty acid profile of feed items, shrimp muscle, and eggs of Litopenaeus vannamei reared in a biofloc system. In the growout phase, the isotope analysis showed the biofloc particle size class ≥250 μm contributed 55–100%; size ≥50 < 250 μm contributed 0–22%; and artificial feed contributed 0–45%. Principal component analysis applied to fatty acid profiles showed that biofloc ≥250 μm and artificial feed were the most important items in shrimp growout. For the egg production, isotope analysis suggested that the most important feed sources according to their relative contributions were polychaetes (0–100%), followed by artemia biomass (0–86%) and semi‐moist feed (0–66%), with lower contributions from squid, mussel, and the muscle of L. vannamei broodstock that had been cultured in biofloc. In terms of fatty acids, the most important items were artemia, polychaetes, and semi‐moist feeds. This work clarified the importance of feed sources for shrimp during culture in biofloc systems and during reproduction. Analysis of stable isotopes and fatty acids can be successfully used to trace the assimilation of nutrients during the nutrition of shrimp.     

Productive performance of juvenile freshwater prawns Macrobrachium rosenbergii in biofloc system

The aim of this study was to compare two rearing systems for freshwater prawn Macrobrachium rosenbergii: one with use of a recirculating aquaculture system with biofilters (RAS) and another with use of microbial flocs (F). Thirty postlarvae of freshwater prawn with an initial average weight of 0.13 ± 0.05 g were randomly stocked in six experimental units with 0.20 m² and volume of 50 L. The experiment lasted thirty days. Dissolved oxygen, temperature and pH were monitored daily; ammonia concentration was determined three times per week; nitrite concentration, alkalinity and hardness were measured weekly. For the formation of microbial floc, molasses was used to keep the ammonia concentrations within safe levels for prawn farming. The variables of water quality remained within the suitable range for the production of the species, except for ammonia concentrations at the F treatment, which exceeded the safe levels. At the end of the experiment, the following parameters were evaluated: survival, specific growth rate, weight gain and feed conversion rate. Differences were found only in feed conversion rate with better values on RAS treatment. The microorganisms present in the RAS and F treatment were also evaluated. The densities of rotifers, amoebas and total bacteria were higher at the F treatment although the same organisms were found at the RAS treatment. The results of this study showed the possibility of rearing M. rosenbergii in biofloc system technology.     

Effects of biofloc technology on reproduction and ovarian recrudescence in Nile tilapia

The objectives of this study were to evaluate the reproductive cycle, morphological changes of ovary and mobilization of energy reserves in Nile tilapia reared with biofloc technology (BFT). In general, the growth and reproductive performance were highly similar between BFT and Control system (clear water). Difference between the systems was found in the hepatosomatic index (using mixed‐effects models), which suggested that BFT can alter the energy mobilization in the post‐spawning period. The absolute and relative fecundity, fertilization rate, number of larvae produced per female, gonadosomatic index, proportion of oogenesis cells, number of post‐ovulatory and atretic follicles were similar between the two systems. We also did not detect a reduction in the reproductive cycle length in Nile tilapia reared in BFT. Because there was no evidence of the negative effects of BFT on Nile tilapia reproduction, we concluded that BFT might be used for breeder stocking of this species.     

Jack beans and vetiver grass growth on iron ore tailing sediments from the Doce River dam disaster in Brazil: plant growth regulator effects under different edaphic conditions

Journal of Soils and Sediments - After the greatest environmental disaster in the history of Brazil and the deposition of the iron ore tailings in alluvial regions, the process of revegetation for...     

Ecosystem‐based management of Amazon fisheries and wetlands

Infrastructure development and overfishing in the Amazon make it imperative to define adequate scales for the ecosystem‐based management of commercial fisheries and the wetlands on which they depend. We mapped fisheries and fish ecology data from Brazil, Peru, Bolivia and Colombia to an explicit GIS framework of river basins and mainstems. Migratory species account for more than 80% of the known maximum catches of commercial fisheries across the Amazon. Of these migratory species, we nominated six long‐distance migratory fish taxa as flagship species to define the two main commercial fishery regions. The migrations of at least one goliath catfish species define a large‐scale longitudinal link joining the Andes, Amazon Lowlands and Amazon River estuary. Migratory Characiforms demonstrate interbasin wetland connectivity between nutrient‐rich and nutrient‐poor rivers over at least 2 million km², or about one‐third of the Amazon Basin. We show that flooded forest area is the most important wetland variable explaining regional variations in migratory characiforme biomass as indicated by maximum annual fishery catches. The sustainable management of Amazon fisheries will require transnational cooperation and a paradigm shift from local community management alone to a more integrated approach that considers both rural and urban consumers and challenges, and the realistic life histories of migratory species.     

Turbine entrainment and passage of potadromous fish through hydropower dams: Developing conceptual frameworks and metrics for moving beyond turbine passage mortality

Potadromous fishes are vulnerable to involuntary entrainment through hydropower turbines. However, turbines can also provide a downstream passage route for potadromous fish. Here, we review evidence for turbine entrainment and passage in potadromous fish, and evaluate the effects of these processes on upstream and downstream populations. We develop conceptual frameworks and metrics to quantify vulnerability to turbine entrainment removals, and to quantify the efficiency of turbines as a downstream passage route. We highlight factors that influence these processes and provide case‐studies demonstrating their applicability. We found that juvenile potadromous fish are being entrained through turbines at rates high enough to impact upstream populations. Given that juvenile passage survival is often high, we argue that turbines provide an important downstream passage route for potadromous fish. We show that entrainment vulnerability is likely a function of interactions between in‐reservoir fish behaviour, habitat configuration and operations and thus not well captured by passage mortality estimates. Similarly, we show that while passage mortality can limit downstream passage efficiency, passage success is also dependent on reservoir and forebay navigation, along with survival and fitness in the downstream river. We advocate for a shift in focus away from estimates of passage mortality and injury, which have previously accounted for the majority of turbine passage research. Instead, we recommend an approach that focusses on quantification of the factors that influence downstream passage efficiency and entrainment vulnerability. Moreover, we highlight the need to better understand the broader scale impacts of these events on upstream and downstream populations.     

Rapid sequence modification in the highly polymorphic region (HPR) of the hemagglutinin gene of the infectious salmon anaemia virus (ISAV) suggests intra-segmental template switching recombination

The ISAV has a genome composed of eight segments of (–)ssRNA, segment 6 codes for the hemagglutinin–esterase protein, and has the most variable region of the genome, the highly polymorphic region (HPR), which is unique among orthomyxoviruses. The HPR has been associated with virulence, infectivity and pathogenicity. The full length of the HPR is called HPR0 and the strain with this HPR is avirulent, in contrast to strains with deleted HPR that are virulent to varying degrees. The molecular mechanism that gives rise to the different HPRs remains unclear. Here, we studied in vitro the evolution of reassortant recombinant ISAV (rISAV) in Atlantic salmon head kidney (ASK) cells. To this end, we rescued and cultivated a set of rISAV with different segment 6-HPR genotypes using a reverse genetics system and then sequencing HPR regions of the viruses. Our results show rapid multiple recombination events in ISAV, with sequence insertions and deletions in the HPR, indicating a dynamic process. Inserted sequences can be found in four segments of the ISAV genome (segments 1, 5, 6, and 8). The results suggest intra-segmental heterologous recombination, probably by class I and class II template switching, similar to the proposed segment 5 recombination mechanism.     

Soil organic carbon fractions and humic substances are affected by land uses of Caatinga forest in Brazil

Caatinga is a Brazilian dry ecosystem that occupies around 1 million km² and is one of the largest tropical dry forests of the world. About 46% of the area that was originally covered has been deforested. Land use can cause pronounced reduction in soil carbon stocks that play a major role in the global carbon cycle. The objective of this study was to improve our understanding of the effect of land use on oxidizable carbon fractions, total carbon stocks and humic substances in different layers of soil in a Brazilian semi-arid region. We analyzed soils from tropical dry forest (TDF), forest succession with Anadenanthera falcata (ANA), with Tabebuia alba (TAB), secondary scrubby regeneration (SCR), and non-irrigated maize (MS). Forests showed larger fractions of more labile carbon, except for TDF. The most recalcitrant fraction of carbon stock, humin fraction stock, with the different land use decreased by 38–53% compared to TDF. Oxidizable carbon fractions, carbon stocks, and humic fraction stocks were able to differentiate the successional land uses and agricultural cover from TDF, mainly in the 0–5?cm layer. Our results show that changes in land use, especially with ANA forest succession, showed a larger labile carbon fraction, indicating easy decomposition and loss. Our results provide an alternative tool for the management of deforested areas in tropical dry caatinga ecosystems. This would contribute to the conservation of dry forest systems and could serve as guideline for sustainable management of agriculturally impacted caatinga areas.     

Genomic prediction for meat and carcass traits in Nellore cattle using a Markov blanket algorithm

This study was carried out to evaluate the advantage of preselecting SNP markers using Markov blanket algorithm regarding the accuracy of genomic prediction for carcass and meat quality traits in Nellore cattle. This study considered 3675, 3680, 3660 and 524 records of rib eye area (REA), back fat thickness (BF), rump fat (RF), and Warner–Bratzler shear force (WBSF), respectively, from the Nellore Brazil Breeding Program. The animals have been genotyped using low-density SNP panel (30 k), and subsequently imputed for arrays with 777 k SNPs. Four Bayesian specifications of genomic regression models, namely Bayes A, Bayes B, Bayes Cπ and Bayesian Ridge Regression methods were compared in terms of prediction accuracy using a five folds cross-validation. Prediction accuracy for REA, BF and RF was all similar using the Bayesian Alphabet models, ranging from 0.75 to 0.95. For WBSF, the predictive ability was higher using Bayes B (0.47) than other methods (0.39 to 0.42). Although the prediction accuracies using Markov blanket of SNP markers were lower than those using all SNPs, for WBSF the relative gain was lower than 13%. With a subset of informative SNPs markers, identified using Markov blanket, probably, is possible to capture a large proportion of the genetic variance for WBSF. The development of low-density and customized arrays using Markov blanket might be cost-effective to perform a genomic selection for this trait, increasing the number of evaluated animals, improving the management decisions based on genomic information and applying genomic selection on a large scale.