Marker-assisted selection efficiency in multiple connected populations: a simulation study based on the results of a QTL detection experiment in maize

Many studies already investigated marker-assisted selection (MAS) efficiency but mainly in biparental populations. Connected multiparental populations address a broader diversity and confer a gain of power for QTL detection which must be beneficial for MAS. Our objective was to compare multiparental connected designs to biparental populations taken separately for MAS and phenotypic selection. We first detected QTL for flowering time and grain yield in an experimental maize design involving four parental inbred lines crossed to produce six different biparental populations and confirmed the advantage of multiparental connected designs over biparental populations for QTL detection. Based on these results we performed stochastic simulations to evaluate the expected efficiency of four generations of MAS and phenotypic selection. Different parameters were considered: trait heritability, genetic architecture and whether QTL were assumed to be known or have to be detected. Genetic gains were higher in the multiparental design than on average over the biparental populations considered separately, especially when favourable alleles were equally distributed among parental lines. When QTL detection was included in the simulation process, we found that type I error risk considered for declaring QTL as significant should be adapted to the design. Type I error risks leading to the best response were higher for the biparental populations than for the multiparental design. Besides addressing a broader diversity, multiparental designs increase the power of QTL detection, which reinforces their superiority over biparental designs for MAS. Application of MAS to multiparental designs therefore appears promising to accelerate genetic gain in plant breeding programs.     

Issues and special features of animal health research

ABSTRACT: In the rapidly changing context of research on animal health, INRA launched a collective discussion on the challenges facing the field, its distinguishing features, and synergies with biomedical research. As has been declared forcibly by the heads of WHO, FAO and OIE, the challenges facing animal health, beyond diseases transmissible to humans, are critically important and involve food security, agriculture economics, and the ensemble of economic activities associated with agriculture. There are in addition issues related to public health (zoonoses, xenobiotics, antimicrobial resistance), the environment, and animal welfare.Animal health research is distinguished by particular methodologies and scientific questions that stem from the specific biological features of domestic species and from animal husbandry practices. It generally does not explore the same scientific questions as research on human biology, even when the same pathogens are being studied, and the discipline is rooted in a very specific agricultural and economic context.Generic and methodological synergies nevertheless exist with biomedical research, particularly with regard to tools and biological models. Certain domestic species furthermore present more functional similarities with humans than laboratory rodents.The singularity of animal health research in relation to biomedical research should be taken into account in the organization, evaluation, and funding of the field through a policy that clearly recognizes the specific issues at stake. At the same time, the One Health approach should facilitate closer collaboration between biomedical and animal health research at the level of research teams and programmes.     

Quantitative analysis of culture using millions of digitized books

We constructed a corpus of digitized texts containing about 4% of all books ever printed. Analysis of this corpus enables us to investigate cultural trends quantitatively. We survey the vast terrain of 'culturomics,' focusing on linguistic and cultural phenomena that were reflected in the English language between 1800 and 2000. We show how this approach can provide insights about fields as diverse as lexicography, the evolution of grammar, collective memory, the adoption of technology, the pursuit of fame, censorship, and historical epidemiology. Culturomics extends the boundaries of rigorous quantitative inquiry to a wide array of new phenomena spanning the social sciences and the humanities.     

Challenging conservation of migratory species: Sahelian rainfalls drive first-year survival of the vulnerable Lesser Kestrel Falco naumanni

In the context of attested global changes, accurate estimation of whether climatic fluctuations impact on population demographic parameters is needed for adequate management, especially for migratory species. We present a capture-recapture analysis linking survival rates of the vulnerable Lesser Kestrel (Falco naumanni) to annual rainfalls in the Sahel region, considered as a proxy of climatic conditions on wintering grounds. Recapture data were obtained from field observations of individuals ringed and sexed as juveniles over a 14-year monitoring period (1994-2007). We addressed a common but problematic situation in birds where: (i) sex is known with certainty for first-summer or older birds but only suspected for juveniles, and (ii) a large proportion of individuals never return to the study population (e.g. transient behavior). Transient behavior and unknown sexes were explicitly integrated considering a two age class in a multistate capture-recapture model. Survival was time-varying for juveniles (geometric mean: 0.499 ± 0.021) but constant - and higher - for adults (0.718 ± 0.013). Yearling survival probabilities were strongly correlated with rainfalls in the Sahel, suggesting a high dependence of juvenile upon the wintering conditions. While taking sex uncertainty into account, we detected no sex-dependence in survival. Incorporating the sensitivity of survival of wintering migratory birds to climatic variables such as precipitations in arid Sahelian ecosystem may allow to model conservation scenarios with a greater realism. Finally, we encourage the development of international management strategies for migratory species on wintering areas in addition to the existing conservation actions on summering Mediterranean grounds.     

Oxygen Consumption and Development of Volatile Sulfur Compounds during Bottle Aging of Two Shiraz Wines. Influence of Pre- and Postbottling Controlled Oxygen Exposure

The evolution of different volatile sulfur compounds (VSCs) during bottle maturation of two Shiraz wines submitted to controlled oxygen exposure prior to bottling (through micro-oxygenation, MOX) and postbottling (through the closure) was investigated. H(2)S, methyl mercaptan (MeSH), and dimethyl sulfide (DMS) were found to increase during aging. Lower postbottling oxygen exposure, as obtained by different degrees of oxygen ingress through the closure, resulted in increased H(2)S and methyl mercaptan. In one wine MOX increased the concentration of H(2)S and methyl mercaptan during maturation. Dimethyl disulfide and DMS were not affected by any form of oxygen exposure. Overall, postbottling oxygen had a stronger influence than MOX on the evolution of VSCs. Data suggest that dimethyl disulfide was not a precursor to methyl mercaptan during bottle maturation. For the two wines studied, a consumption of oxygen of 5 mg/L over 12 months was the most effective oxygen exposure regimen to decrease accumulation of MeSH and H(2)S during bottle aging.     

Botanicals and plant strengtheners for potato and tomato cultivation in Africa

This review provides a summary of botanicals and plant strengtheners that have potential uses for disease and pest management in potato and tomato cultivation in African. We discuss their possible use to prevent major diseases and pests which infest potato and tomato, such as early and late blight, bacterial wilt, potato tuber moth, and tomato leafminer. There are several examples of the successful uses of botanicals for pathogen and pest control relevant for different African climatic conditions; however, most of these studies have been conducted in vitro and often lack field verification. Plant strengtheners(substances that induce and improve crop resistance, yield, and quality) are little studied and used in Africa in comparison to North America and Europe. The possible benefits of using botanicals and plant strengtheners instead of conventional pesticides are discussed here in relation to human health and the environment as well as their modes of action and accessibility to farmers. Lack of knowledge of the composition and active ingredients of extracts, environmental concerns, uncertainties regarding stability and formulation, lack of legislation and limited support from governments, hamper the development of botanicals and plant strengtheners for use in sustainable African agriculture.     

Evolution of 3-mercaptohexanol, hydrogen sulfide, and methyl mercaptan during bottle storage of Sauvignon blanc wines. Effect of glutathione, copper, oxygen exposure, and closure-derived oxygen

The effects of wine composition and postbottling oxygen exposure on 3-mercaptohexanol (3-MH), hydrogen sulfide (H2S), and methyl mercaptan (MeSH) were investigated. A Sauvignon blanc wine with initial copper concentration of 0.1 mg/L was treated with copper sulfate and/or glutathione (GSH) prior to bottling to give final concentrations of 0.3 and 20 mg/L, respectively. The wines were bottled with a synthetic closure previously stored in either ambient air or nitrogen to study the effect of the oxygen normally present in the closure. Bottled wines were stored for 6 months in either air or nitrogen to study the effect of oxygen ingress through the closure. Copper addition resulted in a rapid initial decrease in 3-MH. During storage, a further decrease of 3-MH was observed, which was lower with GSH addition and lowered oxygen exposure. H2S accumulated largely during the second 3 months of bottle storage, with the highest concentrations attained in the wines treated with GSH and copper. Lower oxygen from and through the closure promoted H2S accumulation. The concentration of MeSH was virtually not affected by the experimental variables at 6 months, although differences were observed after 3 months of storage. The implications for wine quality are discussed.     

Influence of mitochondria origin on fruit quality in a citrus cybrid

Sugar, organic acid, and carotenoid are the most important indicators of fruit taste and nutritional and organoleptic quality. These components were studied on fruit pulp of the cybrid between Willow leaf mandarin ( Citrus deliciosa Ten.) and Eureka lemon [ Citrus limon (L.) Burm.] and the two parents. The cybrid possessed nuclear and chloroplast genomes of Eureka lemon plus mitochondria from Willow leaf mandarin. The impact of new mitochondria on fruit quality was studied during the mature period. Levels of organic acids were slightly higher in the cybrid fruit pulp than in Eureka lemon. No significant difference in sugar and carotenoid content was observed between the cybrid and the lemon. Results confirm that the main genetic information for the biosynthesis of sugars, organic acids, and carotenoids is contained in the nucleus. In Citrus, cybridization can be used as a strategy to breed specific traits associated with mitochondrial genomes, such as male sterility, without affecting the main organoleptic and nutritional qualities.     

Visualization of mixing flow phenomena in champagne glasses under various glass-shape and engravement conditions

For the very first time, a classical flow visualization technique was used to capture the fluid motion in traditional flutes and coupes poured with champagne. It was found that glasses engraved around their axis of symmetry produce a rising gas column along the vertical glass axis that induces, in turn, steady state recirculating flow regions. In the case of the classical engraved champagne flute, the whole domain of the liquid phase is homogeneously mixed, whereas in the case of the engraved champagne coupe, the recirculating flow region does not occupy the whole volume in the glass. In the engraved coupe, a dead-zone of very low motion was identified, which inhibits the formation of the collar at the glass edge. Our results finally strongly suggest that the glass-shape and engravement conditions should likely have a strong impact on champagne tasting by modifying the kinetics of release of carbon dioxide molecules and aromatic volatile organic compounds from the liquid medium.     

Chronic desmitis and enthesiophytosis of the radio-ulnar interosseous ligament in a dog

A 10-year-old golden retriever dog was presented for chronic right forelimb lameness associated with a painful swelling at the lateral aspect of the proximal ulna. Proximal ulnar ostectomy and stabilization resulted in a good clinical outcome. The proposed diagnosis is chronic desmitis and enthesiophytosis of the radio-ulnar interosseous ligament.