Detection of a mammalian-like group A rotavirus in diarrhoeic chicken

The present investigation describes detection of a mammalian-like electropherogroup A rotavirus in chicken with diarrhoea. This also records the first detection of a rotavirus in an avian species from India. During the investigation 75 diarrhoeic faecal samples collected from adult chicken were screened for the presence of group A rotavirus antigen by sandwich ELISA. All three samples positive for rotavirus antigen revealed 11 bands of RNA in polyacrylamide gel electrophoresis (PAGE). In contrast to avian group A rotavirus, segment 5 was found to migrate closer to 6 as is the case with mammalian group A rotaviruses. Segments 7, 8 and 9 were found to migrate as a tight triplet, which is characteristic of group A rotavirus.     

Assessment of molecular genetic diversity of 384 chickpea genotypes and development of core set of 192 genotypes for chickpea improvement programs

Genetic Resources and Crop Evolution - Cicer arietinum L. (chickpea) is one of the most significant legume crops domesticated in the Fertile Crescent. This study was aimed to characterize a diverse...     

Application of the Cropping System Model (CSM)‐CROPGRO‐Soybean for Determining Optimum Management Strategies for Soybean in Tropical Environments

The determination of optimum crop management practices for increasing soybean production can provide valuable information for strategic planning in the tropics. However, this process is time consuming and expensive. The use of a dynamic crop simulation model can be an alternative option to help estimate yield levels under various growing conditions. The objectives of this study were to evaluate the performance of the Cropping System Model (CSM)‐CROPGRO‐Soybean and to determine optimum management practices for soybean for growing conditions in the Phu Pha Man district, Thailand. Data from two soybean experiments that were conducted in 1991 at Chiang Mai University and in 2003 at Khon Kaen University were used to determine the cultivar coefficients for the cultivars CM 60 and SJ 5. The CSM‐CROPGRO‐Soybean model was evaluated with data from two experiments that were conducted at Chiang Mai University. The observed data sets from farmers’ fields located in the Phu Pha Man district were also used for model evaluation. Simulations for different management scenarios were conducted with soil property information for seven different soil series and historical weather data for the period 1972–2003 to predict the optimum crop management practices for soybean production in the Phu Pha Man district. The results of this study indicated that the cultivar coefficients of the two soybean cultivars resulted in simulated growth and development parameters that were in good agreement with almost all observed parameters. Model evaluation showed a good agreement between simulated and observed data for phenology and growth of soybean, and demonstrated the potential of the CSM‐CROPGRO‐Soybean model to simulate growth and yield for local environments, including farmers’ fields, in Thailand. The CSM‐CROPGRO‐Soybean simulations indicated that the optimum planting dates from June 15 to July 15 produced maximum soybean yield in a rainfed environment. However, the planting date December 15 produced the highest yield under quality irrigation. Soybean yield was slightly improved by applying nitrogen at a rate of 30 kg N ha^?1 at planting. Soybean yield also improved when the plant density was increased from 20 to 40 plants m^?2. The results from this study suggest that the CSM‐CROPGRO‐Soybean model can be a valuable tool in assisting with determining optimum management practices for soybean cropping systems in the Phu Pha Man district and might be applicable to other agricultural production areas in Thailand and southeast Asia.     

Isolation and characterization of Dichelobacter nodosus from ovine and caprine footrot in Kashmir, India

Footrot is a highly contagious and economically important disease of sheep and goats, caused by Dichelobacter nodosus, a slow growing anaerobic Gram-negative rod. The current Australian antigenic classification system, based on variation in the fimbriae, classifies D. nodosus into at least 10 serogroups (A-I and M) and 18 serotypes. This investigation was intended to determine the serological diversity of D. nodosus in this region of Kashmir, India. Exudates of footrot lesions were collected from 24 naturally infected sheep and 42 goats located in the Kashmir valley. Of these 66 samples, 24 yielded evidence of D. nodosus by PCR using 16SrDNA specific primers. Multiplex PCR using serogroup specific primers revealed the presence of serogroup B in all the samples except two, which showed the presence of serogroup E D. nodosus. This study also documents the isolation of D. nodosus and detection of serogroup E for the first time in India.     

DNA topoisomerase I--targeted chemotherapy of human colon cancer in xenografts

Drug development is needed to improve chemotherapy of patients with locally advanced or metastatic colon carcinoma, who otherwise have an unfavorable prognosis. DNA topoisomerase I, a nuclear enzyme important for solving topological problems arising during DNA replication and for other cellular functions, has been identified as a principal target of a plant alkaloid 20(S)-camptothecin. Significantly increased concentrations of this enzyme, compared to that in normal colonic mucosa, were found in advanced stages of human colon adenocarcinoma and in xenografts of colon cancer carried by immunodeficient mice. Several synthetic analogs of camptothecin, selected by tests with the purified enzyme and tissue-culture screens, were evaluated in the xenograft model. Unlike other anticancer drugs tested, 20(RS)-9-amino-camptothecin (9-AC) induced disease-free remissions. The overall drug toxicity was low and allowed for repeated courses of treatment.     

Molecular epidemiology of ovine herpesvirus type 2 infection in Kashmir, India

The aims of this investigation were to determine the prevalence of ovine herpesvirus type 2 (OvHV-2) (the causative agent of malignant catarrhal fever) infection in cattle, the carrier status of sheep and goats, and to define the pattern of acquisition of OvHV-2 in lambs under natural flock conditions in Kashmir, India. None of the buffy coat samples from 21 lambs contained OvHV-2 DNA sequences up to 28 days after birth, only one lamb had sequences of OvHV-2 DNA as early as 29 days after birth, and they were detected in the other 20 lambs when they were between 43 and 94 days of age. Sequences of OvHV-2 DNA were detected in buffy coat samples from 28 (85 per cent) of 33 adult sheep and in 16 (61 per cent) of 26 samples from adult goats by hemi-nested PCR. Seventeen (31 per cent) of 55 cattle with malignant catarrhal fever-like clinical signs had sequences of OvHV-2 DNA in their blood, and nine of the 17 died, all of them during the months of April to November, between November 2002 and March 2004. No clinical cases of sheep-associated malignant catarrhal fever was recorded during the months of December to March. The overall prevalence of OvHV-2 infection in the cattle in the region was estimated to be less than 1 per cent.     

Genetic resources of rice in the Western Himalayan region of India: current status

The Western Himalayan region of India possesses rich genetic diversity of rice (Oryza sativa L.). Rice landraces having withstood the rigors of biotic and abiotic stresses, suit to the local conditions of farms and reflect socio-cultural preferences can still be found in crop fields located distantly in rural and tribal areas. This region is known for growing World fame basmati in the foot hills and many varieties of red rices grown at higher elevations, known for cold tolerance and medicinal properties. Genetic resources of rice were collected for about 8 years (1999–2006) and 1069 germplasm accessions including 154 named landraces were collected. Prominent landraces such as Begumi, Ramjwain, Thapachini, Naurang, Hansraj, Tilakchandan, Lalsati, Jhini, Mushakbudji, Jattoo, Barpasso, Qadirbeigh, Safedbrez, Shahie known for their special quality attributes were collected. The change in land use, cropping patterns and aggressive introduction of modern varieties in the region has resulted in the loss of a large number of landraces especially from irrigated lands. The present paper looks at the status of rice genetic resources, genetic variability, genetic erosion and future strategies to conserve rice germplasm on farm and to maximize its use in rice breeding.     

Heavy metals in vegetables and their impact on the nutrient quality of vegetables: A review

Vegetables are vital to the human diet, and in particular provide the well-known nutrients to maintain normal physiological functions. The prolonged application of large amount of fertilizers and pesticides has resulted in heavy metal accumulation in vegetable gardens. Exposure to heavy metals by the consumption of contaminated vegetables and its toxicity is a serious concern. This article reviews the presence of heavy metals in different vegetables, their mechanism of absorption, impact of heavy metals on physiology, and nutrient reduction and associated impact on humans with emphasis on pregnant women based on the existing scientific literature. However, a limited number of studies was found in the data base that examined the reduction of nutrients in the vegetables due to heavy metal contamination. The heavy metals were found in 36 vegetables in 61 regions of the world and were above permissible limits in most of the vegetables. Specific study to human toxicity due to the contamination of heavy metals may be conducted with emphasis on pregnant women, children, and elderly people. Furthermore, strategy and policy should be devised to control the heavy metals in vegetables and those vegetables that are hyper-accumulators of heavy metals should be identified for awareness purposes.     

Comparative evaluation of Ca chloride and Ca phosphate for extractable sulfur in soils with a wide range in pH

Deficiency of sulfur (S) is becoming widespread in the rainfed systems of India, and there is increasing need for diagnosing the deficiency. Calcium chloride and Ca phosphate are commonly used for extracting available S in soils. Because of cost and the ease of availability locally, we prefer using Ca chloride as an extractant over Ca phosphate, for extracting available S. However, there is paucity of data on the comparative evaluation of the two extractants to extract available S, especially in soils having a wide range in natural pH (from acidic to alkaline range). It is recognized that soil pH plays a dominant role in the adsorption–desorption and extractability of sulfate‐S in soils. We compared the extraction of S by Ca chloride and Ca phosphate in 86 Indian soils having a wide range in pH (4.5 to 10.6). Sulfur in the extracts was determined by ICP‐AES. Considering all the 86 soil samples tested, there was an excellent agreement between the values of extractable S determined by using the two extractants (r = 0.96, p < 0.001). However, the correlation coefficient (r) between the values of extractable S by the two reagents, although highly significant, varied among the groups of soil samples according to the range in soil pH. The highest correlation coefficient (r = 0.99, p < 0.0001, n = 17) was found for soils with pH in the alkaline range (8.5–10.6), and the lowest correlation coefficient (r = 0.71, p < 0.0001, n = 58) was obtained with a set of soil samples with pH in the acidic range (4.5–6.5). For soil samples having pH in the near‐neutral range (6.7–7.3), an excellent agreement was observed (r = 0.93, p < 0.0001, n =11) between the extractable‐S values obtained by the two extractants. While Ca phosphate extracted higher amount of S compared to Ca chloride in soil samples with pH in the acidic range, the two extractants were equally effective for soil samples with pH in the neutral or alkaline range. Our results suggest that for most of the soils in the semiarid tropical regions, which have pH in the neutral to alkaline range, Ca chloride can replace Ca phosphate as an extractant for removing available S in such soils.