Assessing seed desiccation responses of native trees in the Caribbean

New Forests - Native trees from the Caribbean were tested for seed desiccation responses, by adapting the “100-seed test” protocol. Ninety-seven seed lots of 91 species were collected...     

Interactions of baseflow habitat constraints: Macroinvertebrate drift,stream temperature,and physical habitat for anadromous salmon in the Calapooia River,Oregon

1. The Calapooia River in western Oregon supports a small winter steelhead trout (Oncorhynchus mykiss) population and historically supported spring Chinook salmon (Oncorhynchus tshawytscha). Early timber harvesting removed the riparian forest, and log transportation practices simplified the channel. Those disturbance legacies continue to affect fish habitat by limiting shade and channel complexity, complicating conservation efforts.
2. To evaluate juvenile salmonid rearing potential, macroinvertebrate drift, thermal regime and physical habitat were measured at eight sites in 24 km of the upper river during late summer baseflow.
3. Overall physical habitat was simple, with few functioning instream structures or pools. During the 22‐day drift study, flows declined and maximum site stream temperatures ranged from 23.1°C at the lower end to 16.4°C 24 km upstream.
4. Macroinvertebrate drift concentrations ranged from 0.7–13.7 ind. m^?3 with biomasses from 0.02–1.23 mg m^?3. Drift concentration biomass was higher upstream (P  = 0.006) than downstream and declined overall (P  < 0.001) during the study. Drift biomass was dominated by five taxon groups – Baetis tricaudatus, Calineuria californica, Hesperoperla pacifica, Simulium spp., and Chironomidae, which were 65% of total biomass. During twilight, total biomass and biomass of B. tricaudatus, Simulium spp., and Chironomidae (both larvae and adults) were higher.
5. Total drift declined dramatically over the study period owing to decreases in drift concentration and a 58% decline in discharge, greatly reducing overall drift and available food resources for juvenile‐rearing salmonids.
6. The upper catchment, both with cooler temperatures and higher food availability, provided the best conditions for juvenile anadromous salmonids to survive late summer conditions. Conservation consequences of climate change‐induced alterations in flow and temperature may further affect habitat quality for juvenile salmonids in this catchment in the coming decades.

     

Chemical composition of Lippia spp. essential oil and antimicrobial activity against Aeromonas hydrophila

Phytotherapy can replace antibiotic administration as an alternative to control Aeromonas hydrophila, one of the main bacteria involved in the aetiology of farmed fish diseases. Given that plants of the Lippia spp. genus show biological potential for antimicrobial activity, this study evaluated the chemical composition of essential oils extracted from Lippia alba, Lippia origanoides and Lippia sidoides and their activity against A. hydrophila. The oils were obtained by steam distillation in a Clevenger‐type apparatus and their composition determined by gas chromatography and mass spectrometry (CG/MS). Antibacterial activity was assessed by calculating the minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) using broth microdilution method. The main compounds identified were geranial (25.4%) and neral (16.6%) in L. alba oil, carvacrol (40.4%) and p‐cymene (11.4%) in L. origanoides oil and thymol (76.6%) and ortho‐cymene (6.3%) in L. sidoides oil. The three Lippia species showed bacteriostatic and bactericidal action against A. hydrophila, with MICs and MBCs ranging from 1250 to 5000 μg mL^?1. Of the species tested, the best performance was obtained with essential oil of L. sidoides.     

一种面向育种家的新型台式棉籽脱绒机

正棉籽酸脱绒会危害育种家人身安全和潜在环境。需要1种无需用酸,能有效去除棉短绒且对棉种萌发无不利影响的脱绒方法。为了优化棉籽机械脱绒流程,美国农业部农业研究中心(USDA-ARS)棉花生产与加工部门(Lubbock,Texas)研发创制了一台棉籽机械脱绒样机(图1,图2)。测试设计了应用7种滚筒衬垫(1种是不用任何研磨材料,其余6种分别采用不同的研磨材料)、1个或2个辊刷"擦     

Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications

Background

Fixed arrays of single nucleotide polymorphism (SNP) markers have advantages over reduced representation sequencing in their ease of data analysis, consistently higher call rates, and rapid turnaround times. A 6 K SNP array represents a cost-benefit “sweet spot” for routine genetics and breeding applications in rice. Selection of informative SNPs across species and subpopulations during chip design is essential to obtain useful polymorphism rates for target germplasm groups. This paper summarizes results from large-scale deployment of an Illumina 6 K SNP array for rice.

Results

Design of the Illumina Infinium 6 K SNP chip for rice, referred to as the Cornell_6K_Array_Infinium_Rice (C6AIR), includes 4429 SNPs from re-sequencing data and 1571 SNP markers from previous BeadXpress 384-SNP sets, selected based on polymorphism rate and allele frequency within and between target germplasm groups. Of the 6000 attempted bead types, 5274 passed Illumina’s production quality control. The C6AIR was widely deployed at the International Rice Research Institute (IRRI) for genetic diversity analysis, QTL mapping, and tracking introgressions and was intensively used at Cornell University for QTL analysis and developing libraries of interspecific chromosome segment substitution lines (CSSLs) between O. sativa and diverse accessions of O. rufipogon or O. meridionalis. Collectively, the array was used to genotype over 40,000 rice samples. A set of 4606 SNP markers was used to provide high quality data for O. sativa germplasm, while a slightly expanded set of 4940 SNPs was used for O. sativa X O. rufipogon populations. Biparental polymorphism rates were generally between 1900 and 2500 well-distributed SNP markers for indica x japonica or interspecific populations and between 1300 and 1500 markers for crosses within indica, while polymorphism rates were lower for pairwise crosses within U.S. tropical japonica germplasm. Recently, a second-generation array containing ~7000 SNP markers, referred to as the C7AIR, was designed by removing poor-performing SNPs from the C6AIR and adding markers selected to increase the utility of the array for elite tropical japonica material.

Conclusions

The C6AIR has been successfully used to generate rapid and high-quality genotype data for diverse genetics and breeding applications in rice, and provides the basis for an optimized design in the C7AIR.

     

Effects of biofloc technology on reproduction and ovarian recrudescence in Nile tilapia

The objectives of this study were to evaluate the reproductive cycle, morphological changes of ovary and mobilization of energy reserves in Nile tilapia reared with biofloc technology (BFT). In general, the growth and reproductive performance were highly similar between BFT and Control system (clear water). Difference between the systems was found in the hepatosomatic index (using mixed‐effects models), which suggested that BFT can alter the energy mobilization in the post‐spawning period. The absolute and relative fecundity, fertilization rate, number of larvae produced per female, gonadosomatic index, proportion of oogenesis cells, number of post‐ovulatory and atretic follicles were similar between the two systems. We also did not detect a reduction in the reproductive cycle length in Nile tilapia reared in BFT. Because there was no evidence of the negative effects of BFT on Nile tilapia reproduction, we concluded that BFT might be used for breeder stocking of this species.     

Factors influencing the abundance of three common nearshore fishes in south‐west Lake Michigan

Variation in the distribution and abundance of nearshore fishes is critical to understand food web processes and fishery management issues in Lake Michigan. This study characterised patterns in abundance of three common nearshore species, yellow perch Perca flavescens (Mitchell), round goby Neogobius melanostomus (Pallas) and alewife Alosa pseudoharengus (Wilson), in relation to spatio‐temporal, abiotic and biotic factors using gillnet sampling conducted across 5 years at multiple locations representing different substrates. Significant variations were observed in alewife and round goby catches between locations. A negative relationship between round goby and age‐0 yellow perch catch was observed, indicating potential competition between the two species. This study demonstrates that variability in nearshore fish communities can be driven by factors including substrate and interspecific interactions. Given the prominent role these species play in Lake Michigan's food web and thus their importance to fishery production, a thorough understanding of these factors is warranted.